Gene

KWMTBOMO06704

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(+):12798730-12799819      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.867

CDS

ATGACCGTCCAAGTACAGAAAGACCAGACGAGATCAATCCAGTTGCGCAGAGGTATAAGACAGGGGGATATTATATCCCCGAAACTATTTACAAGCGCACTGGAGGACGTCTTCAAGACTCTCGACTGGAACGGACGCGGCATTAACATAAACGGCGAGTACATTTCACATCTTCGCTTTGCCGATGACATCGTCATCATGGCGGTATCGCTGCAGGACCTACAAGAAAAGCTGTACAGCCTTAATACTGCATCTCAACGGGTAGATAAGACCAAGATAATATTTAACGGAAACGTCATTCCGAGACCAATCGATGTTGATGGTACACCTGAGGAAGTGTATGTCTACCTGGCAGAGACCCTACAACTAGGTAGAAATAATTTTGAGAAGGAAGTGATCAGAAGGATTCAGTTGGGCTGGGCAGCATTTGGGAAGCTTCGTCAGGTCTTTTCGTCACCCATACCACAATGTCTGAAGACAAATGTCTATAATCAGTGCGTCCTACCCGTGCTTACCTACGGAGCCGAAACGTGGACGCTGACCGTGCGACTAGTCTATCAACCAAAAATTACTCAGCGAGCTATAGAGCGAGCTATGCTTGGTTTATCATTGCGAGACCGAATACGTAATGAAGTTATTCGGGCAAAAACCAAGGTGATCGATATAGCTTGCAGAGTTAGTAAGCTGAAGTGGCAGTGGGCCGGTCACATATGTCGCAGAACCGATAACCTTTGGGGTAGACGTATTCTGGAGTGGAGACCGCGAACCGGCAAACGGAGTGTAGGACATCCTCCTGCTATTTGGAGCGACGATATGCGCAAGGCAGCTGGCAGTAACTGGTTGCATAGAACCGAAGATCGGGTTCAGTGGCGAGCTTTGGGGGAGGCCTATGTCCAGCAGTGGACTGCCACAGGCTGA

Protein

MTVQVQKDQTRSIQLRRGIRQGDIISPKLFTSALEDVFKTLDWNGRGININGEYISHLRFADDIVIMAVSLQDLQEKLYSLNTASQRVDKTKIIFNGNVIPRPIDVDGTPEEVYVYLAETLQLGRNNFEKEVIRRIQLGWAAFGKLRQVFSSPIPQCLKTNVYNQCVLPVLTYGAETWTLTVRLVYQPKITQRAIERAMLGLSLRDRIRNEVIRAKTKVIDIACRVSKLKWQWAGHICRRTDNLWGRRILEWRPRTGKRSVGHPPAIWSDDMRKAAGSNWLHRTEDRVQWRALGEAYVQQWTATG

Similarity

Belongs to the ATP-dependent DNA ligase family.

Uniprot

D7F157   D7F165   D7F166   A4KWF4   A4KWF2   A4KWG0   + More
D7F164   A0A3S2TAR4   A0A3S2KX72   D7F160   D7F159   D7F158   A0A2W1BMB6   A0A3S2LUJ5   A0A2W1BLC9   W4YXJ1   A0A3S2TRE0   A0A2G8JFM9   A0A1E1X2U1   A0A2G8K4F2   A0A023EXV2   A0A2G8KES6   A0A2W1B5F8   A0A2W1BCS2   W4YXJ0   D7F177   D7F176   A0A2H1VY30   A0A016U3R5   D7F179   A0A2W1BSQ8   A0A2W1BDX2   D7F178   A0A016TIA8   A0A016WEQ1   A0A2W1BZV1   A0A016S795   A0A016WA79   A0A069DX96   A0A016S1D2   A0A023EWU8   A0A016S5B2   A0A016VVN3   A0A016W591   A0A224XSN7   A0A0K0FAW8   A0A0P4VWD0   A0A016V6V0   A0A016T7J7   A0A016UMK7   A0A016RXU5   A0A016RYK0   A0A016V7H3   A0A016VV56   A0A023GMF8   A0A016UTS3   A0A016WPY4   A0A016UWI5   A0A016SUK5   A0A016WCB8   A0A016ULU9   A0A131YK20   A0A016S403   A0A016U784   A0A016WKV3   A0A016UJL8   A0A016S949   A0A016TUG1   A0A016WMQ0   A0A016WC44   A0A2H1VS24   A0A069DZM5   A0A016WD35   A0A016USZ5   A0A016TQ81   A0A016VDZ6   A0A016WES8   A0A016WCG1   A0A016WD08   A0A016VBB9   A0A016VGM4   A0A016VN75   A0A016UUF2   A0A016VTY8   A0A016VMK8   A0A016SSP6   A0A016UR05   A0A016VW83   A0A016UGM6   A0A016TXK2  

Pubmed

20470440    17360547    28756777    29023486    28503490    25474469    + More
25730766    26334808    27129103    26830274   

EMBL

FJ265542    ADI61810.1    FJ265550    ADI61818.1    FJ265551    ADI61819.1    + More
EF113399    EF113400    ABO45233.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    FJ265549    ADI61817.1    RSAL01002362    RVE40503.1    RSAL01002130    RVE40575.1    FJ265545    ADI61813.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    KZ150072    PZC74016.1    RSAL01000007    RVE54059.1    KZ149985    PZC75698.1    AAGJ04144474    RSAL01000016    RVE53061.1    MRZV01002136    PIK34564.1    GFAC01005640    JAT93548.1    MRZV01000899    PIK42833.1    GBBI01004876    JAC13836.1    MRZV01000640    PIK46507.1    KZ150317    PZC71439.1    KZ150485    PZC70710.1    AAGJ04050748    FJ265562    ADI61830.1    FJ265561    ADI61829.1    ODYU01004982    SOQ45402.1    JARK01001396    EYC09581.1    FJ265564    ADI61832.1    KZ149912    PZC78089.1    KZ150108    PZC73382.1    FJ265563    ADI61831.1    JARK01001434    EYC02684.1    JARK01000347    EYC38051.1    KZ149907    PZC78256.1    JARK01001621    EYB86109.1    JARK01000460    EYC36749.1    GBGD01000453    JAC88436.1    JARK01001655    EYB84321.1    GBBI01004877    JAC13835.1    JARK01001626    EYB85833.1    JARK01001340    EYC30828.1    JARK01000807    EYC34984.1    GFTR01005437    JAW10989.1    GDKW01001596    JAI54999.1    JARK01001351    EYC23394.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001370    EYC16151.1    JARK01001677    EYB83168.1    EYB83167.1    EYC23395.1    EYC31295.1    GBBM01001358    JAC34060.1    JARK01001362    EYC18844.1    JARK01000173    EYC41342.1    EYC18843.1    JARK01001512    EYB94036.1    JARK01000388    EYC37469.1    EYC16150.1    GEDV01010296    JAP78261.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01000224    EYC40226.1    JARK01001372    EYC15539.1    JARK01001608    EYB86877.1    JARK01001414    JARK01001412    EYC06128.1    EYC06440.1    JARK01000189    EYC40935.1    JARK01000449    EYC36872.1    ODYU01004088    SOQ43598.1    GBGD01000380    JAC88509.1    JARK01000384    EYC37506.1    JARK01001364    EYC18031.1    JARK01001423    EYC04578.1    JARK01001348    EYC25257.1    EYC37503.1    EYC37504.1    EYC37505.1    JARK01001349    EYC24735.1    JARK01001346    EYC26784.1    JARK01001344    EYC28218.1    JARK01001361    EYC19034.1    JARK01001341    EYC30223.1    JARK01001343    EYC28635.1    JARK01001517    EYB93530.1    JARK01001367    EYC17351.1    EYC31302.1    JARK01001378    EYC13977.1    JARK01001406    EYC07496.1   

Proteomes

UP000283053    UP000007110    UP000230750    UP000024635    UP000035680   

PRIDE

D7F157    D7F165    D7F166    D7F164    D7F160    D7F159    + More
D7F158    D7F177    D7F176    D7F179    D7F178   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01826   TIL
PF11411   DNA_ligase_IV
PF04675   DNA_ligase_A_N
PF04679   DNA_ligase_A_C
PF01068   DNA_ligase_A_M
PF13855   LRR_8

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR001357   BRCT_dom       
IPR036420   BRCT_dom_sf       
IPR012340   NA-bd_OB-fold       
IPR016059   DNA_ligase_ATP-dep_CS       
IPR012310   DNA_ligase_ATP-dep_cent       
IPR021536   DNA_ligase_IV_dom       
IPR029710   LIG4       
IPR000977   DNA_ligase_ATP-dep       
IPR012308   DNA_ligase_ATP-dep_N       
IPR036599   DNA_ligase_N_sf       
IPR012309   DNA_ligase_ATP-dep_C       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       
SSF52113   SSF52113       
SSF50249   SSF50249       

Gene 3D

3.60.10.10     1.10.3260.10     3.40.50.10190     3.80.10.10    

ProteinModelPortal

D7F157   D7F165   D7F166   A4KWF4   A4KWF2   A4KWG0   + More
D7F164   A0A3S2TAR4   A0A3S2KX72   D7F160   D7F159   D7F158   A0A2W1BMB6   A0A3S2LUJ5   A0A2W1BLC9   W4YXJ1   A0A3S2TRE0   A0A2G8JFM9   A0A1E1X2U1   A0A2G8K4F2   A0A023EXV2   A0A2G8KES6   A0A2W1B5F8   A0A2W1BCS2   W4YXJ0   D7F177   D7F176   A0A2H1VY30   A0A016U3R5   D7F179   A0A2W1BSQ8   A0A2W1BDX2   D7F178   A0A016TIA8   A0A016WEQ1   A0A2W1BZV1   A0A016S795   A0A016WA79   A0A069DX96   A0A016S1D2   A0A023EWU8   A0A016S5B2   A0A016VVN3   A0A016W591   A0A224XSN7   A0A0K0FAW8   A0A0P4VWD0   A0A016V6V0   A0A016T7J7   A0A016UMK7   A0A016RXU5   A0A016RYK0   A0A016V7H3   A0A016VV56   A0A023GMF8   A0A016UTS3   A0A016WPY4   A0A016UWI5   A0A016SUK5   A0A016WCB8   A0A016ULU9   A0A131YK20   A0A016S403   A0A016U784   A0A016WKV3   A0A016UJL8   A0A016S949   A0A016TUG1   A0A016WMQ0   A0A016WC44   A0A2H1VS24   A0A069DZM5   A0A016WD35   A0A016USZ5   A0A016TQ81   A0A016VDZ6   A0A016WES8   A0A016WCG1   A0A016WD08   A0A016VBB9   A0A016VGM4   A0A016VN75   A0A016UUF2   A0A016VTY8   A0A016VMK8   A0A016SSP6   A0A016UR05   A0A016VW83   A0A016UGM6   A0A016TXK2  

KEGG

105841784    no KO assigned | (RefSeq) uncharacterized LOC105841784

GO

GO:0004519   GO:0003964  

PANTHER

PTHR45997:SF1  

Length:

305

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06876

Exp number, first 60 AAs:

0.00126

Total prob of N-in:

0.14609

outside

1  -  305

 

 

Pi

247.368203

Theta

199.270558

Tajima's D

0.759736

CLR

28.736285

CSRT

0.585220738963052

Interpretation

Uncertain