SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06695
Pre Gene Modal
BGIBMGA011730
Annotation
cuticular_protein_hypothetical_10_precursor_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.729
 

Sequence

CDS
ATGCAATTACGTATAAAAGCGACATCGTCCACATCTGTGCATCAGTTGTTGAGAATTACACACGCAACACAGACCACTTACAGAATGATGAAGCTGGTGGTGTTGTCCTGCATGTTGGCGGCCGTATATGGCGGACCCGTGGCGCCCATCACCTACACTGCACCGCCTGCATACATCGCACCGTTGATCGCGCTTTTCGGCAACTACAGAGGGCCGCTGTCCCTTGCCCCCGGCCAGCCCGCCAACGTCCTCGGCGCCGACGGCAGGCCCCTCGACACTCTCGACGTTAACTTGGACCGCGCGGCGCACTACACCAGCAAAGCTCTCGGCGTCCACCTGTTGAAGAAGCGCTCTGCCGTCATCGCACCCATCAGCACTGTCGCCGTCGCACACTCACCACTGATCACCCCGGTCGCTCACATCGCCTACAGCGCTCCCCTCGCTACTGCCCACTATGCGCCTCTAACCTACGCTGCTCGCCCCATTGTGCACTGGTAG
Protein
MQLRIKATSSTSVHQLLRITHATQTTYRMMKLVVLSCMLAAVYGGPVAPITYTAPPAYIAPLIALFGNYRGPLSLAPGQPANVLGADGRPLDTLDVNLDRAAHYTSKALGVHLLKKRSAVIAPISTVAVAHSPLITPVAHIAYSAPLATAHYAPLTYAARPIVHW

Summary

Ontologies

GO

Topology

Length:
165
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
27.86783
Exp number, first 60 AAs:
22.8458
Total prob of N-in:
0.99504
POSSIBLE N-term signal
sequence
inside
1  -  31
TMhelix
32  -  54
outside
55  -  165
 
 

Population Genetic Test Statistics

Pi
175.716416
Theta
155.686913
Tajima's D
0.404502
CLR
0
CSRT
0.487775611219439
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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