SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06690
Pre Gene Modal
BGIBMGA011727
Annotation
cuticular_protein_hypothetical_14_precursor_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.553
 

Sequence

CDS
ATGAACAAATTGGTGGTGTTGTTTTCAATCTTCGCGGCCGCCGTCGCCAAGCCAAGCTTGGTGGCTCCTTTGGCCTACAGCGCTGTCGTGCCTGGAGTTAGTTCGCTGTCCCAGTACAGCACCAGTGTGGTCCACGGATCGCCTCTGGTAGCTCCTGCTTTGTACAACGCTGCACTCGTCGCTCCCGGTGTGGTTCCTGCAGTCGCCGCCCTCTCTCAAGCCCCGCACTCTCCTGCTGTCGTCCTGGATGCTGTTAACGGTGTCCCTCTCGACACTCCTGAGGTCGTCGCTGCCCGCGCCGCTCACTTCCAGGCAAAAGCTTTGTCTGGCTACCACCACCTCCGCAAGCGGTCTGTCGTCGCTCCCGTGGCCTACAGCTCCGTCGTCTCTCCCGTCGCCTACCCTTCGCCTGTAGTCTCCGCCTATTCAGCTCCCTTTGTATCGGCATATTCTACTCCTGTAGTTTCTCCTCTTTCTCTATACCCCAAAACCGTTGGCCTCCGAGCATGGTGA
Protein
MNKLVVLFSIFAAAVAKPSLVAPLAYSAVVPGVSSLSQYSTSVVHGSPLVAPALYNAALVAPGVVPAVAALSQAPHSPAVVLDAVNGVPLDTPEVVAARAAHFQAKALSGYHHLRKRSVVAPVAYSSVVSPVAYPSPVVSAYSAPFVSAYSTPVVSPLSLYPKTVGLRAW

Summary

Ontologies

GO

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.958512
 
 
Length:
170
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
42.21028
Exp number, first 60 AAs:
29.96148
Total prob of N-in:
0.87992
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  48
TMhelix
49  -  71
inside
72  -  170
 
 

Population Genetic Test Statistics

Pi
125.833857
Theta
155.073097
Tajima's D
-0.592821
CLR
64.220084
CSRT
0.222688865556722
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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