SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06680
Pre Gene Modal
BGIBMGA011762
Annotation
PREDICTED:_pupal_cuticle_protein_C1B_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.246
 

Sequence

CDS
ATGTTTAAGCTGTTTATCTTCACCTGTGTCCTTGCCTTCGCTGCAGCCAAGCCAGGTTATTTGGTCAGTGACGTCGCACCGGTAGCCGCTGCCTATACCGCTCCTATAGCTGCGGCATACACTGCTCCTCTTGCCTATTCAGCCTATTCCGCGTATACTGCACCAGTAGCTGCCTACTCAGCCTACCCGTACGCCTCGCCCTACGCAGCTTACTACCTCCGTCGTTAA
Protein
MFKLFIFTCVLAFAAAKPGYLVSDVAPVAAAYTAPIAAAYTAPLAYSAYSAYTAPVAAYSAYPYASPYAAYYLRR

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.986563
 
 
Length:
75
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
42.52787
Exp number, first 60 AAs:
34.78125
Total prob of N-in:
0.55152
POSSIBLE N-term signal
sequence
inside
1  -  18
TMhelix
19  -  41
outside
42  -  50
TMhelix
51  -  73
inside
74  -  75
 
 

Population Genetic Test Statistics

Pi
159.021237
Theta
155.782011
Tajima's D
-0.372111
CLR
3.634556
CSRT
0.273186340682966
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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