SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06677
Annotation
PREDICTED:_pupal_cuticle_protein_C1B-like_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.235 Nuclear   Reliability : 1.022
 

Sequence

CDS
ATGTTCAAACTGTTCATCTTCGCTTGCTTCCTGGCCTTCGCGGCGGCTAAGCCCAGCGTCCTTCTCAGCTCGTACACGGCTCCCGTCGCATACACCGCGCCCGTCGCGGCTGCCTACACCGCTCCGCTGGCCTACTCAGCCTACACCGCACCAGTAGCAGCCTACTCCGCCTACACATACGCCTCACCCTACGCCGCTTACTACCTCCGCCGTTAA
Protein
MFKLFIFACFLAFAAAKPSVLLSSYTAPVAYTAPVAAAYTAPLAYSAYTAPVAAYSAYTYASPYAAYYLRR

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.985659
 
 
Length:
71
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
44.25576
Exp number, first 60 AAs:
38.53078
Total prob of N-in:
0.89942
POSSIBLE N-term signal
sequence
inside
1  -  4
TMhelix
5  -  27
outside
28  -  46
TMhelix
47  -  69
inside
70  -  71
 
 

Population Genetic Test Statistics

Pi
260.993154
Theta
212.799772
Tajima's D
0.71303
CLR
0
CSRT
0.577671116444178
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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