SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06661  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011771
Annotation
Uncharacterized_protein_OBRU01_10972_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 2.771
 

Sequence

CDS
ATGAAACTAATTACCCACAATATGCTCACTTCGAAATGCTTGAAAGGTGTTGTGACTGGCTATCCTCTTGCAATTAACGCGACAGACATTAAAGTTAAAGAAGTCGATTTTAATCCTGAATTTATTAGTCGTGTAATACCAAAGCTGGATTGGGAAGTATTATGGGTGGCCGCTGATAGCATCGGCCACAGTGATGGTCTGCCAAGATCTTTAGAAAATAAGTATGATGAAAACGAAGAGTTTTTGAAGAAAGCTCATAAAGTCTTGTTAGAGGTGGAAGTTGAAGAGGGACACTTGACTTGTCCAGAATCTGGAAGACAATTTCCGATTTCTAAAGGAATTCCTAATATGCTATTAAATGAAGCTGAAGTGCAGTAG
Protein
MKLITHNMLTSKCLKGVVTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENKYDENEEFLKKAHKVLLEVEVEEGHLTCPESGRQFPISKGIPNMLLNEAEVQ

Summary

EMBL
BABH01011965    JTDY01001634    KOB73288.1    NWSH01000114    PCG79419.1    GDQN01001598    + More
JAT89456.1    GAIX01013377    JAA79183.1    KQ461190    KQ460205    KPJ07138.1    KPJ16799.1    KQ459590    KPI97408.1    AGBW02008299    OWR53791.1    ODYU01006722    SOQ48825.1    KQ414578    KOC71189.1    KZ288253    PBC31001.1    APGK01057714    KB741280    KB632170    ENN71016.1    ERL89514.1    GEZM01001507    JAV97722.1    GDKW01001085    JAI55510.1    GBYB01011554    JAG81321.1    NEVH01014379    PNF27658.1    GBBI01002823    JAC15889.1    KQ981855    KYN34766.1    PYGN01000142    PSN53018.1    KQ977726    KYN00279.1    KQ976522    KYM82072.1    GL888217    EGI64727.1    GL447768    EFN85952.1    GEBQ01023662    JAT16315.1    GECL01000128    JAP05996.1    GECZ01000659    JAS69110.1    KQ762400    OAD55907.1    GECU01010460    JAS97246.1    GEDC01011818    GEDC01002843    JAS25480.1    JAS34455.1    GBGD01003494    JAC85395.1    KQ983219    KYQ46525.1    KQ980989    KYN10551.1    KQ971331    EFA01007.1    KQ435987    KOX67731.1    LJIG01016121    KRT81553.1    GBHO01040151    GBRD01004793    JAG03453.1    JAG61028.1    ACPB03021089    GL435626    EFN72984.1    KK852714    KDR17916.1    GACK01006500    JAA58534.1    GEDV01006407    JAP82150.1    GEFH01004836    JAP63745.1    GGLE01004189    MBY08315.1    LBMM01012351    KMQ86269.1    GL732525    EFX89016.1    GBZX01002638    JAG90102.1    GFPF01008525    MAA19671.1    GDIQ01167791    JAK83934.1    GBBL01002315    JAC25005.1    NEDP02001639    OWF52796.1    GFAC01006912    JAT92276.1    GFAA01000671    JAU02764.1    GBBK01004301    JAC20181.1    KK107020    QOIP01000006    EZA62601.1    RLU22014.1    ADTU01001292    LRGB01000024    KZS21682.1    GDIP01065766    JAM37949.1    GDIQ01028571    JAN66166.1    GADI01002977    JAA70831.1    ABJB010041971    DS661451    EEC03095.1    CP026255    AWP11955.1    GBYX01181532    JAO85724.1    HADW01004778    HADX01006462    SBP06178.1    BT082320    ACQ58027.1    HAEH01002431    HAEI01005152    SBR92007.1    HAED01008624    HAEE01007312    SBQ94836.1    HAEB01008107    HAEC01008748    SBQ76886.1    NHOQ01001766    PWA22238.1    HADZ01022201    HAEA01007924    SBQ36404.1    HADY01005626    HAEJ01007289    SBP44111.1    GG666648    EEN46146.1    GDIP01243510    JAI79891.1    AFYH01015977   
Pfam
PF03966   Trm112p
Interpro
IPR039127   Trm112        + More
IPR005651   Trm112-like       
PDB
6K0X     E-value=1.74765e-26,     Score=289

Ontologies

Topology

Length:
125
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01372
Exp number, first 60 AAs:
0.01372
Total prob of N-in:
0.23217
outside
1  -  125
 
 

Population Genetic Test Statistics

Pi
53.625751
Theta
137.58373
Tajima's D
-1.964707
CLR
1161.637589
CSRT
0.0170991450427479
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 NSETGMLEGLPTAWLR 100.00 1e-05
26280517 VKEIIQEEEDISEIVQIVGK 100.00 0.006
27102218 EVDFNPEFISR 100.00 0.006
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