SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06652
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.5
 

Sequence

CDS
ATGAGACGGATTTGTGAAGGCTGGGATGGTGAAGTCACCATTGGTGGAGTTAAATTGACCAACCTCCGATACGCCGACGACACCATTCTCCTCGCGGCTAATGAAAGCGAGATGGCTGCTCTCATGAGCAAGCTTGAAAAAATTAGCCTCGAACTTGATCTTGCCATTAACCGATCCAAAACGAAAGTGATGATAATAGACCGCATGAACAAACTGGAGCACACCGGGTCACTGCATCTTGAAACAACAGAAAGATTCATGGGCTCCAAGATTGCGAATACTGGATCGTGCGAGCCTGAAATTCGAAGACGTATCGGGATAGCAATGAGTGCCATGTCTCAGCTTGATAGCATATGGTCCGATAGAAACATCTCCATAAAAACCAAGCGTAAACTTGTAACAAGTCTTGTGTTTTCTATTTTCTTATATGGGGCGGAGACATGGACTCTGAAGAAGGCTGATCGAAGTCGGATCGACGCGTTTGAGATGTTGAGCTGGAGGAAAATGCTGCGGATTCCCTGGACGGCGCATCGGACGAACGCATCAATCCTGGAAGAACTAGGCGTCTCCTCAATACTCTCCACCACTTGCTTACGTAGAAATTTAGAGTTTTTCGGCCACGTTGCGAGGAAAAAAGGTGACAATCTCGAAAAACTTCTCCTCATCGGCAAAATGGAAGGAAAGAGGCCTAGGGGACGTAGTCCCATGCGCTGGTCCAATCAGATTAAGACGACTTTGGAATCCAGCATCAATGTCGCTATCCACTGCGCGGAGGACAGGAGTGAATGGAGGAACATAGTCCTAACAAAAGTGCTCCGTAAAGGTCACGACCCTGAGCACTGA
Protein
MRRICEGWDGEVTIGGVKLTNLRYADDTILLAANESEMAALMSKLEKISLELDLAINRSKTKVMIIDRMNKLEHTGSLHLETTERFMGSKIANTGSCEPEIRRRIGIAMSAMSQLDSIWSDRNISIKTKRKLVTSLVFSIFLYGAETWTLKKADRSRIDAFEMLSWRKMLRIPWTAHRTNASILEELGVSSILSTTCLRRNLEFFGHVARKKGDNLEKLLLIGKMEGKRPRGRSPMRWSNQIKTTLESSINVAIHCAEDRSEWRNIVLTKVLRKGHDPEH

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
280
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.07048
Exp number, first 60 AAs:
0.0004
Total prob of N-in:
0.41154
outside
1  -  280
 
 

Population Genetic Test Statistics

Pi
242.079242
Theta
129.623856
Tajima's D
1.553969
CLR
0.663647
CSRT
0.806509674516274
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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