Gene

KWMTBOMO06652

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):12216997-12217991      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.5

CDS

ATGAGACGGATTTGTGAAGGCTGGGATGGTGAAGTCACCATTGGTGGAGTTAAATTGACCAACCTCCGATACGCCGACGACACCATTCTCCTCGCGGCTAATGAAAGCGAGATGGCTGCTCTCATGAGCAAGCTTGAAAAAATTAGCCTCGAACTTGATCTTGCCATTAACCGATCCAAAACGAAAGTGATGATAATAGACCGCATGAACAAACTGGAGCACACCGGGTCACTGCATCTTGAAACAACAGAAAGATTCATGGGCTCCAAGATTGCGAATACTGGATCGTGCGAGCCTGAAATTCGAAGACGTATCGGGATAGCAATGAGTGCCATGTCTCAGCTTGATAGCATATGGTCCGATAGAAACATCTCCATAAAAACCAAGCGTAAACTTGTAACAAGTCTTGTGTTTTCTATTTTCTTATATGGGGCGGAGACATGGACTCTGAAGAAGGCTGATCGAAGTCGGATCGACGCGTTTGAGATGTTGAGCTGGAGGAAAATGCTGCGGATTCCCTGGACGGCGCATCGGACGAACGCATCAATCCTGGAAGAACTAGGCGTCTCCTCAATACTCTCCACCACTTGCTTACGTAGAAATTTAGAGTTTTTCGGCCACGTTGCGAGGAAAAAAGGTGACAATCTCGAAAAACTTCTCCTCATCGGCAAAATGGAAGGAAAGAGGCCTAGGGGACGTAGTCCCATGCGCTGGTCCAATCAGATTAAGACGACTTTGGAATCCAGCATCAATGTCGCTATCCACTGCGCGGAGGACAGGAGTGAATGGAGGAACATAGTCCTAACAAAAGTGCTCCGTAAAGGTCACGACCCTGAGCACTGA

Protein

MRRICEGWDGEVTIGGVKLTNLRYADDTILLAANESEMAALMSKLEKISLELDLAINRSKTKVMIIDRMNKLEHTGSLHLETTERFMGSKIANTGSCEPEIRRRIGIAMSAMSQLDSIWSDRNISIKTKRKLVTSLVFSIFLYGAETWTLKKADRSRIDAFEMLSWRKMLRIPWTAHRTNASILEELGVSSILSTTCLRRNLEFFGHVARKKGDNLEKLLLIGKMEGKRPRGRSPMRWSNQIKTTLESSINVAIHCAEDRSEWRNIVLTKVLRKGHDPEH

Uniprot

D7F163   A0A2H1VU13   D7F168   D7F172   A0A2W1BGD9   A0A3S2L0R7   + More
D7F161   D7F162   D7F167   D7F175   D5LB39   A0A2G8JE23   A0A2G8L6P4   A0A2G8JVI4   A0A3Q1MCX3   W5NMM5   A0A3Q1M7G0   A0A3Q1LT03   A0A3Q1MFU8   A0A061BKJ9   A0A3Q1M4E7   A0A3Q1MIT2   A0A3Q1M4J9   A0A0B7BUR9   A0A3Q1LGI2   A0A3Q1MDY8   A0A3Q1LQN1   A0A3Q1MNS1   A0A3Q1LT63   A0A2H6KKM9   A0A3Q1MJR3   A0A023G885   A0A3Q1MJZ2   A0A3Q1MCA0   A0A3Q1LR18   A0A3Q1M2T8   H3B2Y3   A0A3Q1LFQ0   A0A1J5WD64   A0A3Q1MMS2   A0A3Q1LRK7   F6R5D0   A0A3Q1N3Y9   A0A3Q1MJK8   A0A3Q1NI39   A0A3Q1MQ02   W4YPU3   A0A3Q1LLH3   A0A0B7BVD3   A0A3Q1MVF7   A0A3Q1MVY4   W5PUC3   A0A3Q1MI63   A0A3Q1MMW6   A0A3Q1NE26   A0A3S3P648   A0A3Q1MWB3   A0A3Q1MHE1   A0A3Q1NBD6   A0A3Q1N9K5   A0A3Q1M6Y4   A0A3Q1MN71   A0A3Q1MGA3   A0A061BKT1   A0A3Q1MB43   A0A3Q1LNZ2   A0A3Q1LRD2   A0A3Q1LKL4   A0A3Q1LUA6   A0A3Q1MSR0   A0A3Q1NFA5   A0A3Q1LGW2   A0A3Q1MZJ0   H2YWZ5   A0A3Q1MDZ3   A0A3Q1LRK8   A0A3Q1LQF3   A0A146L0Z1   A0A3Q1LWU3   A0A3Q1ML90   O97916   A0A3Q1NJH7   A0A3Q1LNR9   A0A3Q1NB85   A0A3Q1LSI8   A0A3Q1LKN4   A0A3Q1MXT5   A0A3Q1N8A1   A0A3Q1MGV6   A0A3Q1NBK7   F6RFH2   A0A3Q1M1T7   A0A3Q1MBA9   A0A3Q1MZC9   A0A3Q1MVG9  

Pubmed

20470440    28756777    29023486    19393038    29078748    9215903    + More
27694476    20809919    26823975    10555285   

EMBL

FJ265548    ADI61816.1    ODYU01004401    SOQ44236.1    FJ265553    ADI61821.1    + More
FJ265557    ADI61825.1    KZ150203    PZC72267.1    RSAL01000289    RVE42931.1    FJ265546    ADI61814.1    FJ265547    ADI61815.1    FJ265552    ADI61820.1    FJ265560    ADI61828.1    GU815090    ADF18553.1    MRZV01002322    PIK33998.1    MRZV01000196    PIK55924.1    MRZV01001207    PIK39730.1    AHAT01022938    LK055282    CDR71995.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    BDSA01000081    GBE63537.1    GBBM01006298    JAC29120.1    AFYH01119920    MKPU01000878    OIR55924.1    AAGJ04055194    HACG01049245    CEK96110.1    AMGL01091659    AMGL01091660    AMGL01091661    AMGL01091662    AMGL01091663    AMGL01091664    AMGL01091665    AMGL01091666    AMGL01091667    AMGL01091668    NCKU01004395    RWS06003.1    LK054988    CDR71535.1    GDHC01017214    JAQ01415.1    AJ132772    CAA10770.1   

Proteomes

UP000283053    UP000230750    UP000009136    UP000018468    UP000008672    UP000007110    + More
UP000002356    UP000285301    UP000007875   

PRIDE

D7F163    D7F168    D7F172    D7F161    D7F162    D7F167    + More
D7F175    D5LB39   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   A0A2H1VU13   D7F168   D7F172   A0A2W1BGD9   A0A3S2L0R7   + More
D7F161   D7F162   D7F167   D7F175   D5LB39   A0A2G8JE23   A0A2G8L6P4   A0A2G8JVI4   A0A3Q1MCX3   W5NMM5   A0A3Q1M7G0   A0A3Q1LT03   A0A3Q1MFU8   A0A061BKJ9   A0A3Q1M4E7   A0A3Q1MIT2   A0A3Q1M4J9   A0A0B7BUR9   A0A3Q1LGI2   A0A3Q1MDY8   A0A3Q1LQN1   A0A3Q1MNS1   A0A3Q1LT63   A0A2H6KKM9   A0A3Q1MJR3   A0A023G885   A0A3Q1MJZ2   A0A3Q1MCA0   A0A3Q1LR18   A0A3Q1M2T8   H3B2Y3   A0A3Q1LFQ0   A0A1J5WD64   A0A3Q1MMS2   A0A3Q1LRK7   F6R5D0   A0A3Q1N3Y9   A0A3Q1MJK8   A0A3Q1NI39   A0A3Q1MQ02   W4YPU3   A0A3Q1LLH3   A0A0B7BVD3   A0A3Q1MVF7   A0A3Q1MVY4   W5PUC3   A0A3Q1MI63   A0A3Q1MMW6   A0A3Q1NE26   A0A3S3P648   A0A3Q1MWB3   A0A3Q1MHE1   A0A3Q1NBD6   A0A3Q1N9K5   A0A3Q1M6Y4   A0A3Q1MN71   A0A3Q1MGA3   A0A061BKT1   A0A3Q1MB43   A0A3Q1LNZ2   A0A3Q1LRD2   A0A3Q1LKL4   A0A3Q1LUA6   A0A3Q1MSR0   A0A3Q1NFA5   A0A3Q1LGW2   A0A3Q1MZJ0   H2YWZ5   A0A3Q1MDZ3   A0A3Q1LRK8   A0A3Q1LQF3   A0A146L0Z1   A0A3Q1LWU3   A0A3Q1ML90   O97916   A0A3Q1NJH7   A0A3Q1LNR9   A0A3Q1NB85   A0A3Q1LSI8   A0A3Q1LKN4   A0A3Q1MXT5   A0A3Q1N8A1   A0A3Q1MGV6   A0A3Q1NBK7   F6RFH2   A0A3Q1M1T7   A0A3Q1MBA9   A0A3Q1MZC9   A0A3Q1MVG9  

KEGG

105841345    no KO assigned | (RefSeq) uncharacterized LOC105841345

GO

GO:0003964   GO:0004519   GO:0004197   GO:0016021  

Length:

280

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.07048

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.41154

outside

1  -  280

 

 

Pi

242.079242

Theta

129.623856

Tajima's D

1.553969

CLR

0.663647

CSRT

0.806509674516274

Interpretation

Uncertain