Gene

KWMTBOMO06648

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):12147946-12150451      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS       + More
Probable RNA-directed DNA polymerase from transposon X-element      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.456 Nuclear   Reliability : 1.294

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCACTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATGA

Protein

MVRNDRLSARGGGTVTYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIK

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   X1WLB2   A0A023EYS8   K7IN67   A0A2S2QEE0   J9LC21   V5GNF3   X1WNI2   A0A2S2PPK8   J9JS95   A0A2J7RE85   X1WZH0   A0A2J7PU96   A0A2J7QR37   A0A2J7PBY3   A0A2J7QY69   J9LFC9   J9KPF1   A0A2S2NJB5   J9KLB1   A0A023EZE6   A0A224XF24   A0A2S2PA10   A0A2J7R7D0   A0A2J7PP17   A0A224XI99   A0A2J7Q6J2   A0A2S2N6Q7   A0A224XB44   A0A224X6Q4   A0A1Y1K0C8   A0A224X7Z3   J9M522   X1WXE6   A0A224X6S1   A0A2S2R9D4   A0A2S2PJG2   A0A2S2N814   A0A087U3K8   A0A2S2NH02   A0A1Y1LKN6   A0A2J7PQB5   A0A087UCW3   A0A2S2P6S3   A0A224X6U5   A0A2S2NGV8   A0A224X6T4   A0A1Y1KFR3   A0A224X6W2   A0A2J7RMG0   A0A224X746   A0A087T3W0   A0A2H8TF37   J9KSK5   A0A2S2Q383   A0A0V0G5B6   A0A0H3UA66   A0A2M4CV52   A0A224XJI0   Q95SX7   A0A2S2NPG3   A0A2J7QB68   A0A2S2Q352   A0A2A4IUM2   A0A2S2P698   A0A224XIB0   A0A2S2PEZ9   A0A232ENU1   A0A3S2NJ07   A0A2M4CV42   A0A2H8TKI9   A0A2S2QDN9   A0A0J7MYU2   A0A2S2P7B2   A0A087UGF5   Q07995   A0A3N5Z7I3   J9KKL3   A0A2S2PX53   J9LYS0   A0A2S2Q2R8   A0A2S2PBB4   A0A224X6R6   A0A1Y1MT28   Q9NBX4   A0A2S2P3X8   A0A352X8G4  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    20075255    26812285    7753626    12537569    28648823    8387152    30086797    11405632    30148503   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    ABLF02042518    ABLF02057746    GBBI01004395    JAC14317.1    GGMS01006359    MBY75562.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GALX01005359    JAB63107.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMR01018716    MBY31335.1    ABLF02028535    ABLF02028545    NEVH01005277    PNF39135.1    ABLF02034467    NEVH01021205    PNF19912.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    ABLF02023911    ABLF02041767    GGMR01004661    MBY17280.1    ABLF02040174    ABLF02040183    ABLF02055266    GBBI01004571    JAC14141.1    GFTR01008038    JAW08388.1    GGMR01013409    MBY26028.1    NEVH01006736    PNF36716.1    NEVH01023280    PNF18085.1    GFTR01008256    JAW08170.1    NEVH01017470    PNF24199.1    GGMR01000226    MBY12845.1    GFTR01008262    JAW08164.1    GFTR01008279    JAW08147.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GFTR01007929    JAW08497.1    ABLF02024246    ABLF02016634    GFTR01008271    JAW08155.1    GGMS01017365    MBY86568.1    GGMR01016905    MBY29524.1    GGMR01000676    MBY13295.1    KK118005    KFM71947.1    GGMR01003864    MBY16483.1    GEZM01053022    JAV74219.1    NEVH01022639    PNF18527.1    KK119261    KFM75202.1    GGMR01012443    MBY25062.1    GFTR01008251    JAW08175.1    GGMR01003407    MBY16026.1    GFTR01008261    JAW08165.1    GEZM01084969    JAV60363.1    GFTR01008260    JAW08166.1    NEVH01002556    PNF42024.1    GFTR01008151    JAW08275.1    KK113281    KFM59799.1    GFXV01000908    MBW12713.1    ABLF02014118    ABLF02014121    ABLF02054790    GGMS01002992    MBY72195.1    GECL01003538    JAP02586.1    KF280391    AIE77315.1    GGFL01004957    MBW69135.1    GFTR01008257    JAW08169.1    AY060438    AAL25477.1    GGMR01006408    MBY19027.1    NEVH01016302    PNF25823.1    GGMS01002955    MBY72158.1    NWSH01007753    PCG62823.1    GGMR01012305    MBY24924.1    GFTR01008246    JAW08180.1    GGMR01015412    MBY28031.1    NNAY01003095    OXU19992.1    RSAL01000708    RVE41206.1    GGFL01005012    MBW69190.1    GFXV01002840    MBW14645.1    GGMS01006655    MBY75858.1    LBMM01013518    KMQ85605.1    GGMR01012676    MBY25295.1    KK119692    KFM76444.1    S59870    AAB26437.2    RPOV01000134    RPJ78669.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMS01000737    MBY69940.1    ABLF02041861    GGMS01002786    MBY71989.1    GGMR01014053    MBY26672.1    GFTR01008269    JAW08157.1    GEZM01021881    JAV88842.1    AF237761    AAF81411.1    GGMR01011511    MBY24130.1    DNOY01000259    HBE18313.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000002358    UP000235965    UP000054359    + More
UP000218220    UP000215335    UP000283053    UP000036403   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7    Q9NBX4   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF07727   RVT_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   X1WLB2   A0A023EYS8   K7IN67   A0A2S2QEE0   J9LC21   V5GNF3   X1WNI2   A0A2S2PPK8   J9JS95   A0A2J7RE85   X1WZH0   A0A2J7PU96   A0A2J7QR37   A0A2J7PBY3   A0A2J7QY69   J9LFC9   J9KPF1   A0A2S2NJB5   J9KLB1   A0A023EZE6   A0A224XF24   A0A2S2PA10   A0A2J7R7D0   A0A2J7PP17   A0A224XI99   A0A2J7Q6J2   A0A2S2N6Q7   A0A224XB44   A0A224X6Q4   A0A1Y1K0C8   A0A224X7Z3   J9M522   X1WXE6   A0A224X6S1   A0A2S2R9D4   A0A2S2PJG2   A0A2S2N814   A0A087U3K8   A0A2S2NH02   A0A1Y1LKN6   A0A2J7PQB5   A0A087UCW3   A0A2S2P6S3   A0A224X6U5   A0A2S2NGV8   A0A224X6T4   A0A1Y1KFR3   A0A224X6W2   A0A2J7RMG0   A0A224X746   A0A087T3W0   A0A2H8TF37   J9KSK5   A0A2S2Q383   A0A0V0G5B6   A0A0H3UA66   A0A2M4CV52   A0A224XJI0   Q95SX7   A0A2S2NPG3   A0A2J7QB68   A0A2S2Q352   A0A2A4IUM2   A0A2S2P698   A0A224XIB0   A0A2S2PEZ9   A0A232ENU1   A0A3S2NJ07   A0A2M4CV42   A0A2H8TKI9   A0A2S2QDN9   A0A0J7MYU2   A0A2S2P7B2   A0A087UGF5   Q07995   A0A3N5Z7I3   J9KKL3   A0A2S2PX53   J9LYS0   A0A2S2Q2R8   A0A2S2PBB4   A0A224X6R6   A0A1Y1MT28   Q9NBX4   A0A2S2P3X8   A0A352X8G4  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

721

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.70114000000001

Exp number, first 60 AAs:

0.05386

Total prob of N-in:

0.03431

outside

1  -  721

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

159.008543

CSRT

0

Interpretation

Uncertain