Gene

KWMTBOMO06647

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):12131538-12135871      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.802 Nuclear   Reliability : 1.262

CDS

ATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGTTAACGCCCGTCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGAGCGACGCAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATACTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGGGCCGGGGGCCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPVNARRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFAEQRRVLVAKIGPDLSLPTVVATILGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGGRRRAFVQLQPL

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N0PA09   A0A0N1PFV1   O96546   + More
A0A1Y1NA23   V5GNF3   V5GNJ2   A0A139WA11   A0A2S2PH29   X1WL89   A0A2J7R7D0   A0A1Y1LKN6   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7Q059   A0A2J7RM10   A0A2J7PMP6   A0A2J7QUJ9   A0A2S2RAN7   A0A2J7RB54   A0A2J7RPU2   A0A2J7PMP9   A0A2J7RS77   A0A023F742   X1WZH0   A0A2H8TWD9   A0A2J7QEZ4   A0A2J7Q5G9   A0A2J7R2E1   A0A2J7QFL0   A0A2J7Q0Q6   A0A2J7R6U1   A0A2P8Z520   A0A2J7RKP3   A0A2J7QR37   A0A2J7Q6J2  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    29403074   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GGMR01016114    MBY28733.1    ABLF02019349    ABLF02041900    NEVH01006736    PNF36716.1    GEZM01053022    JAV74219.1    NEVH01003017    PNF40781.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01020071    PNF21969.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    NEVH01010546    PNF32261.1    GGMS01017914    MBY87117.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    NEVH01023961    PNF17613.1    NEVH01000280    PNF43672.1    GBBI01001693    JAC17019.1    ABLF02034467    GFXV01006424    MBW18229.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    NEVH01007838    PNF34986.1    NEVH01014858    PNF27387.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    PYGN01000192    PSN51582.1    NEVH01002716    PNF41415.1    NEVH01011985    PNF31054.1    NEVH01017470    PNF24199.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000245037   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N0PA09   A0A0N1PFV1   O96546   + More
A0A1Y1NA23   V5GNF3   V5GNJ2   A0A139WA11   A0A2S2PH29   X1WL89   A0A2J7R7D0   A0A1Y1LKN6   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7Q059   A0A2J7RM10   A0A2J7PMP6   A0A2J7QUJ9   A0A2S2RAN7   A0A2J7RB54   A0A2J7RPU2   A0A2J7PMP9   A0A2J7RS77   A0A023F742   X1WZH0   A0A2H8TWD9   A0A2J7QEZ4   A0A2J7Q5G9   A0A2J7R2E1   A0A2J7QFL0   A0A2J7Q0Q6   A0A2J7R6U1   A0A2P8Z520   A0A2J7RKP3   A0A2J7QR37   A0A2J7Q6J2  

KEGG

105841478    no KO assigned | (RefSeq) uncharacterized LOC105841478

GO

GO:0003964   GO:0004519  

Length:

619

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.28271

Exp number, first 60 AAs:

0.02884

Total prob of N-in:

0.01118

outside

1  -  619

 

 

Pi

19.96156

Theta

18.614759

Tajima's D

-1.945731

CLR

172.163012

CSRT

0.0145492725363732

Interpretation

Uncertain