Gene

KWMTBOMO06638

Pre Gene Modal

BGIBMGA011782

Annotation

putative_RNA_exonuclease_NEF-sp_[Operophtera_brumata]

Location

Bomo_Chr11(-):11977189-11979881      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.446

CDS

ATGTCACGTAAAGGAAGCACCAAATGTATAGTCTCATCAGACAATAACTGTGAAGAACTCAATTCTGACAAAACATTAAAACCCGTTAAAAGTGTAAAGCACTTACCTAAATTTCGTTTCAAAATTGCTGGAGAACAAGAAGCCTTAATTTATCACAGCCACCTCGGTGTTCTCACACCATCAGTTTATAATGGCTCACTAGTTCAAGAACTAGCTTTAGTACCATTAACTGAACTAGAAAAAGAAAGCTTAATACAGAAATATGGTTCTATGAATTTAGCTCTCGAGGTTAGAAAAGATCTAATGGTCATGATGAGAGCAATTTTTCCAATTGTTGATCAGAGTGAAAGCACAAATGAAATAAGATGCAATGATAAGTTTCCTAGAACACAACTTATTCTATCAGCTTGGCAGTTGTTAGAGGAAAATTACCCTGTACCTCTGAAAGGTAAATTGCAACACACATATTCAGATTATGTAATGAGTAAAGAGGAATATACACCCGTAACAGCAACCTCACCACTATTTGGTATAGACTGTGAAATGTGCATTACAAATGCTGGGTCAGAATTAACTCGTATATCTGTAGTGAATGAAAAACATGAAGTTGTCTATGAATCCTTGGTTAAGCCCTACAACGATATAACAGATTATTTGACACGATTTTCTGGAATTACAAAGCCAATATTGAATGATGTAACAAAAAGACTCGAGGATGTTCAAAAAGATTTACGGGAACTTTTACCATCAGATGCTATTCTTGTAGGTCAATCATTAAATGTAGACATGCATGCTTTAAAAATGATGCATCCATACATAATTGATACAAGCGTAATATTTAATTTTATGGGTGAAAGATCTCGTAAACCAAAATTAAAATCTTTGGTAAAAGAACTATTGAGAGAAGATATCCAATGTGGCAAAAATGGACATTGTTCTGTAGAAGATTCCTTAGCTTCATTGAAATTAGTGCAACTTAAACTCAGTAAAAACATTGAATATGGAGATGCAGTGCACACAAACAGAGAAAAATTTAAAGAAAATATAATAAAAATGGCACAGTCTGAACATTACACAATCTCAATATTCAACCGCATGATGGAACACAAGAAATCTTCTTTGATTGTTGGATGTGACAACATTACGGGGGATTACCACACATACTTGTCTCAAGCAAAAGAAAATATGACATCACAGTTAAAAAGAGGGAAAGGGATGTCTAAAAAAATTAAATTGAATACTGTTGATACAGTTGACGAAGTGATATCAACTCTATGTAATGCTGTTTCTGAATATAATTTTACTATGGCACATTTGAGATTGAAATTAGATACTTCAAATGAACTAGAGGAGATTAAAAAAATAGATAAGTGGATAAAAAGTGTGTGGAACAGTGTTGAGCAATCAGCTCTGTGTATAGTAGTGCTTGGAGGAACAACTGTAGACAATGGCGTTGCTATGATAAGAGTTAAAGGGTCTTGA

Protein

MSRKGSTKCIVSSDNNCEELNSDKTLKPVKSVKHLPKFRFKIAGEQEALIYHSHLGVLTPSVYNGSLVQELALVPLTELEKESLIQKYGSMNLALEVRKDLMVMMRAIFPIVDQSESTNEIRCNDKFPRTQLILSAWQLLEENYPVPLKGKLQHTYSDYVMSKEEYTPVTATSPLFGIDCEMCITNAGSELTRISVVNEKHEVVYESLVKPYNDITDYLTRFSGITKPILNDVTKRLEDVQKDLRELLPSDAILVGQSLNVDMHALKMMHPYIIDTSVIFNFMGERSRKPKLKSLVKELLREDIQCGKNGHCSVEDSLASLKLVQLKLSKNIEYGDAVHTNREKFKENIIKMAQSEHYTISIFNRMMEHKKSSLIVGCDNITGDYHTYLSQAKENMTSQLKRGKGMSKKIKLNTVDTVDEVISTLCNAVSEYNFTMAHLRLKLDTSNELEEIKKIDKWIKSVWNSVEQSALCIVVLGGTTVDNGVAMIRVKGS

Uniprot

H9JQH6   A0A2A4JGZ1   A0A2H1X169   A0A1E1WBK9   A0A3S2N9Q7   A0A0L7LL95   + More
A0A212FDG9   A0A194QQD1   A0A194Q1V1   A0A2J7R2Y7   A0A0C9RIP5   A0A310SNT7   A0A2A3E3P6   A0A087ZTK6   E9I9L2   A0A0L7R0X8   K7IPC7   A0A195CLX5   A0A232FGG2   A0A1B6EF18   A0A1B6C3X1   D6WG53   A0A067RBI6   W8CCQ2   A0A0M9A6I9   A0A195EVB9   A0A195E4W6   A0A158NAH3   A0A151X537   F4X237   A0A151I6G4   A0A0A1WVL0   A0A034W5R7   A0A1W4V9R4   A0A0K8V7P7   A0A2J7R2Y8   E0VYV1   U4UN26   A0A1W4X9I9   A0A336K4Q2   A0A0L0C4E5   A0A1B0FB51   A0A1A9VYR6   A0A1B0AI12   A0A1A9WW77   A0A1A9Y1J5   A0A1B0BPV8   B3NGJ2   B4QJS3   B4HUV8   B4LIB4   U5EQ47   B4KVF6   A0A0J9RQ54   Q9VRX7   B4N2Y6   B4IXW6   B4PJQ6   A0A1Y1LIX4   A0A0M4EJN0   A0A0J7L5Y2   A0A1B6GLD9   A0A1B6L121   A0A3B0KQU8   A0A3B0K4G8   A0A1B6LU42   A0A3B0KGQ2   A0A1Y1LIV4   B3M9I1   A0A1J1I3I8   A0A1Y1N5B8   A0A1B0GPT9   A0A023EVG1   A0A182G1E7   A0A1B6HS73   Q174Z4   B0WT74   A0A1S4FEG0   A0A1I8PPU3   B4H797   Q29DR2   A0A026WH54   A0A3L8DGZ6   E2ARN0   A0A1Q3F5E7   T1P8G7   A0A1I8N6P3   A0A182J4R9   A0A084VDP2   A0A226ECU6   A0A2M3Z5S9   A0A2M3Z5R0   A0A182MNA5   A0A2M4BEY8   A0A2M4BEZ7  

Pubmed

19121390    26227816    22118469    26354079    21282665    20075255    + More
28648823    18362917    19820115    24845553    24495485    21347285    21719571    25830018    25348373    20566863    23537049    26108605    17994087    18057021    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    28004739    24945155    26483478    17510324    15632085    24508170    30249741    20798317    25315136    24438588   

EMBL

BABH01011999    NWSH01001612    PCG70690.1    ODYU01012587    SOQ58998.1    GDQN01006684    + More
JAT84370.1    RSAL01000395    RVE41969.1    JTDY01000710    KOB76134.1    AGBW02009074    OWR51747.1    KQ461190    KPJ07165.1    KQ459590    KPI97380.1    NEVH01007823    PNF35209.1    GBYB01009900    GBYB01013112    JAG79667.1    JAG82879.1    KQ761738    OAD57148.1    KZ288434    PBC25769.1    GL761846    EFZ22668.1    KQ414669    KOC64497.1    KQ977642    KYN01074.1    NNAY01000229    OXU29851.1    GEDC01000762    JAS36536.1    GEDC01029299    JAS07999.1    KQ971319    EFA00202.1    KK852567    KDR21221.1    GAMC01003301    JAC03255.1    KQ435732    KOX77476.1    KQ981954    KYN32210.1    KQ979609    KYN20230.1    ADTU01010310    KQ982519    KYQ55523.1    GL888565    EGI59453.1    KQ976413    KYM90426.1    GBXI01011430    JAD02862.1    GAKP01009477    JAC49475.1    GDHF01017571    JAI34743.1    PNF35208.1    DS235848    EEB18557.1    KB632375    ERL93858.1    UFQS01000102    UFQT01000102    SSW99639.1    SSX20019.1    JRES01000932    KNC27175.1    CCAG010007618    JXJN01018245    CH954178    EDV51158.2    KQS43678.1    CM000363    EDX09464.1    CH480817    EDW50729.1    CH940647    EDW69681.2    GANO01004413    JAB55458.1    CH933809    EDW18399.2    CM002912    KMY97948.1    AE014296    BT023775    AAF50654.1    AAN12085.1    AAZ41783.1    CH964062    EDW78725.2    CH916366    EDV96487.1    CM000159    EDW93655.2    GEZM01054527    JAV73583.1    CP012525    ALC43235.1    LBMM01000426    KMQ98387.1    GECZ01006512    JAS63257.1    GEBQ01022585    JAT17392.1    OUUW01000012    SPP87601.1    SPP87602.1    GEBQ01012775    JAT27202.1    SPP87600.1    GEZM01054528    JAV73582.1    CH902618    EDV41194.2    CVRI01000037    CRK93430.1    GEZM01012200    JAV93112.1    AJVK01034735    GAPW01000607    JAC12991.1    JXUM01038377    JXUM01038378    JXUM01038379    KQ561163    KXJ79496.1    GECU01030177    JAS77529.1    CH477404    EAT41637.1    DS232080    EDS34217.1    CH479217    EDW33703.1    CH379070    EAL30352.3    KK107231    EZA55001.1    QOIP01000009    RLU19138.1    GL442157    EFN63892.1    GFDL01012296    JAV22749.1    KA645026    AFP59655.1    ATLV01011632    KE524705    KFB36086.1    LNIX01000004    OXA55405.1    GGFM01003093    MBW23844.1    GGFM01003108    MBW23859.1    AXCM01006240    GGFJ01002485    MBW51626.1    GGFJ01002484    MBW51625.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000007151    UP000053240    + More
UP000053268    UP000235965    UP000242457    UP000005203    UP000053825    UP000002358    UP000078542    UP000215335    UP000007266    UP000027135    UP000053105    UP000078541    UP000078492    UP000005205    UP000075809    UP000007755    UP000078540    UP000192221    UP000009046    UP000030742    UP000192223    UP000037069    UP000092444    UP000078200    UP000092445    UP000091820    UP000092443    UP000092460    UP000008711    UP000000304    UP000001292    UP000008792    UP000009192    UP000000803    UP000007798    UP000001070    UP000002282    UP000092553    UP000036403    UP000268350    UP000007801    UP000183832    UP000092462    UP000069940    UP000249989    UP000008820    UP000002320    UP000095300    UP000008744    UP000001819    UP000053097    UP000279307    UP000000311    UP000095301    UP000075880    UP000030765    UP000198287    UP000075883   

PRIDE

H9JQH6    Q9VRX7   

Pfam

PF00929   RNase_T

Interpro

IPR013520   Exonuclease_RNaseT/DNA_pol3        + More
IPR036397   RNaseH_sf       
IPR034922   REX1-like_exo       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.30.420.10    

CDD

cd06145  REX1_like

ProteinModelPortal

H9JQH6   A0A2A4JGZ1   A0A2H1X169   A0A1E1WBK9   A0A3S2N9Q7   A0A0L7LL95   + More
A0A212FDG9   A0A194QQD1   A0A194Q1V1   A0A2J7R2Y7   A0A0C9RIP5   A0A310SNT7   A0A2A3E3P6   A0A087ZTK6   E9I9L2   A0A0L7R0X8   K7IPC7   A0A195CLX5   A0A232FGG2   A0A1B6EF18   A0A1B6C3X1   D6WG53   A0A067RBI6   W8CCQ2   A0A0M9A6I9   A0A195EVB9   A0A195E4W6   A0A158NAH3   A0A151X537   F4X237   A0A151I6G4   A0A0A1WVL0   A0A034W5R7   A0A1W4V9R4   A0A0K8V7P7   A0A2J7R2Y8   E0VYV1   U4UN26   A0A1W4X9I9   A0A336K4Q2   A0A0L0C4E5   A0A1B0FB51   A0A1A9VYR6   A0A1B0AI12   A0A1A9WW77   A0A1A9Y1J5   A0A1B0BPV8   B3NGJ2   B4QJS3   B4HUV8   B4LIB4   U5EQ47   B4KVF6   A0A0J9RQ54   Q9VRX7   B4N2Y6   B4IXW6   B4PJQ6   A0A1Y1LIX4   A0A0M4EJN0   A0A0J7L5Y2   A0A1B6GLD9   A0A1B6L121   A0A3B0KQU8   A0A3B0K4G8   A0A1B6LU42   A0A3B0KGQ2   A0A1Y1LIV4   B3M9I1   A0A1J1I3I8   A0A1Y1N5B8   A0A1B0GPT9   A0A023EVG1   A0A182G1E7   A0A1B6HS73   Q174Z4   B0WT74   A0A1S4FEG0   A0A1I8PPU3   B4H797   Q29DR2   A0A026WH54   A0A3L8DGZ6   E2ARN0   A0A1Q3F5E7   T1P8G7   A0A1I8N6P3   A0A182J4R9   A0A084VDP2   A0A226ECU6   A0A2M3Z5S9   A0A2M3Z5R0   A0A182MNA5   A0A2M4BEY8   A0A2M4BEZ7  

PDB

5Z9X     E-value=3.3141e-20,     Score=243

KEGG

101738143    K14570 RNA exonuclease 1 [EC:3.1.-.-] | (RefSeq) putative RNA exonuclease NEF-sp

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0004527   GO:0005634   GO:0000175   GO:0031125   GO:0005730   GO:0031126   GO:0008270   GO:0008603   GO:0008026   GO:0005524   GO:0005234   GO:0006811   GO:0016020   GO:0006260  

Length:

493

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14169

Exp number, first 60 AAs:

0.03268

Total prob of N-in:

0.01707

outside

1  -  493

 

 

Pi

256.05557

Theta

193.774419

Tajima's D

1.046782

CLR

16.333663

CSRT

0.673116344182791

Interpretation

Uncertain