SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06637
Pre Gene Modal
BGIBMGA011699
Annotation
PREDICTED:_uncharacterized_protein_LOC106135000_isoform_X1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.72
 

Sequence

CDS
ATGGGTTGCACCAGCAGCGCACCAGCTGTCGTTACACCTGATGCTAGTGCCACAGAAAGGCAGAAAAGCATTCAATTCGCTGATAGCTGTGATCAAACAATAAATAGTAATGAAGAAATCGAAAACAGTGAAAGACACGATACAAATAATGTGCTTCCTCAATGTGATACTTTAGAACAAACTATACGTTTAGTTAAAAGTGATATTTCTCTGATGGAGACATTTCCTTTAAAGGAAGATAAAAATTGTCAGGATGTTGCAGAAATGAATTCGAATAGTGAAAAAGAATTAGGAGCCATTGTTATTGCTAACGAAGAGGATAAAATCTCTACTTTAGAGGAAGTTATTGAAAAGGTAATGGAATTGAATCATTCAGATGAAATGCAAAGTTCACAAAATGAAGAAACCTCGCCAATTAATAATTCAGAGGACCAAAACCATACGACACAGGTGGAAGATACTAATGTATCACAAAGTATTGGACATATTGAACCAATTAACGAACAAGATGAGCACGGGGAAGAAGCAATTAGCCCCAGTCTATCAGAGAGCAGTCGTGCTACGAGATGGGAAGCTTTAGCTGATATTGCAGCGGAACTACCGGCATCACTCACCATTGATCCTTTAACGGGTCAAATTTATTCACTCGCAAAATAA
Protein
MGCTSSAPAVVTPDASATERQKSIQFADSCDQTINSNEEIENSERHDTNNVLPQCDTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESSRATRWEALADIAAELPASLTIDPLTGQIYSLAK

Summary

Pfam
PF00078   RVT_1
Interpro
IPR000477   RT_dom       

Ontologies

GO

Topology

Length:
218
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00131
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05532
outside
1  -  218
 
 

Population Genetic Test Statistics

Pi
212.023594
Theta
210.343105
Tajima's D
0.864395
CLR
0.966629
CSRT
0.621368931553422
Interpretation
Uncertain
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