Gene

KWMTBOMO06635

Pre Gene Modal

BGIBMGA011697

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_RNF146-B_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr11(+):11956262-11960822      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.424

CDS

ATGGAATATGATTGTGCTGTTTGCTTGCAAAAATGTCAACATCCAACAAAACTATCCTGCGGTCATGTTTTCTGTTTTCTTTGTGTGAAGGGTGTAGCTCATCAAAGCAGAAAATGTGCAATGTGTCGCACAGAAATTCCTTTAGACTACTTTGAAAACCCTGTTCTATTGGACAAGTCTAATCTTCAGTATGCTGCCAATGTTGATGGAGTAGAAGGATTCCAATGGTATTATGAAGGAAGAAATGGTTGGTGGAAATATGATGAGCGTAGCAACTCTGAATTAGAAAATGCCTTCAATAATGGAGAATCAGAGTGTACTTTACTACTGGCTGGGACTTTGTACATTGTTGACTTCCAAGCAATGACTCAATTCCGTAGAAGTGATCATACTCGCAGGCGGCGGGTGCAAAGGGATACCCCACGGTTACCTGCCAAAGGAATAGCCGGTATAAGAACAAATATTAATCAAGTGCCAATTGAAATAAAAGATGAAACTGAAGATAATGTCAACGAAAATCATGATAATGCAGAAACTGAAATTATAATAACAGATAATGTGCAAAATAGTAATGGATCTGAACACATTTTGAATCAAAACGTGTCATCAGTTCAATCTGAGGATATTGATGATGTCGTTTCACGAATCAGTACTTTAGATCTCAATAATGCTGATTCAAACGGTCTAATTGATGAAAGTTGA

Protein

MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEIPLDYFENPVLLDKSNLQYAANVDGVEGFQWYYEGRNGWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQAMTQFRRSDHTRRRRVQRDTPRLPAKGIAGIRTNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADSNGLIDES

Uniprot

H9JQ91   A0A3S2TCF3   A0A212FDF4   A0A067QMT5   A0A1Y1MFG1   A0A0P5X736   + More
A0A0P4ZQD5   A0A0P5XDU4   A0A0P5EMP3   A0A0P5Y7C5   A0A1W4X0V2   A0A1W4WPV8   A0A0P5DHD9   A0A194PVF7   A0A0P5A333   A0A164RZN7   A0A0P5CMT5   A0A0P5UZV0   A0A0P5UHA1   A0A0P5H3W2   A0A0P5CAC9   A0A0P5XYX0   A0A0P5E034   A0A0P5BP32   A0A0N8AGR0   A0A0P4ZN67   A0A0P5ZDX9   A0A0P4ZVW4   A0A0N8ABH9   A0A0P5D133   A0A0P6AVT2   A0A2R5L7L3   A0A0K8TSM0   K7JAP3   B0WVR8   A0A3Q3EUK7   A0A1I8N709   A0A3Q3KJG9   A0A232ESQ5   A0A1I8N705   A0A3B5B753   Q4SC49   A0A3Q3GM33   A0A087TXR7   A0A3Q2GB12   V9L099   A0A3B0JZT7   A0A023EQF6   A0A3B0JSE7   A0A3B3YX95   A0A096MET2   A0A131XIT5  

Pubmed

19121390    22118469    24845553    28004739    26354079    26369729    + More
20075255    25315136    28648823    15496914    24402279    24945155    28049606   

EMBL

BABH01011999    RSAL01000395    RVE41972.1    AGBW02009074    OWR51743.1    KK853239    + More
KDR09510.1    GEZM01037499    JAV82047.1    GDIP01076558    JAM27157.1    GDIP01213248    JAJ10154.1    GDIP01075118    JAM28597.1    GDIP01157509    JAJ65893.1    GDIP01075117    JAM28598.1    GDIP01157510    JAJ65892.1    KQ459590    KPI97376.1    GDIP01209192    JAJ14210.1    LRGB01002121    KZS09097.1    GDIP01168245    JAJ55157.1    GDIP01122953    JAL80761.1    GDIP01232193    GDIP01212339    GDIP01131953    GDIP01112955    JAL90759.1    GDIQ01239417    GDIP01073815    GDIP01054971    JAK12308.1    JAM29900.1    GDIP01177247    JAJ46155.1    GDIP01212341    GDIP01151648    GDIP01131954    GDIP01115757    GDIP01066566    JAM37149.1    GDIP01149058    GDIP01045369    JAJ74344.1    GDIP01220844    GDIP01181895    JAJ41507.1    GDIP01149057    GDIP01126505    GDIP01126504    GDIQ01083559    JAJ74345.1    JAN11178.1    GDIP01220843    GDIP01212340    GDIP01200948    GDIP01131955    GDIP01115756    JAJ11062.1    GDIP01151647    GDIP01149056    GDIP01045370    JAM58345.1    GDIP01220842    GDIP01200947    JAJ02560.1    GDIP01163705    JAJ59697.1    GDIP01162653    JAJ60749.1    GDIP01025814    JAM77901.1    GGLE01001368    MBY05494.1    GDAI01000487    JAI17116.1    AAZX01000976    DS232131    EDS35675.1    NNAY01002386    OXU21385.1    CAAE01014660    CAG01783.1    KK117232    KFM69906.1    JW871702    AFP04220.1    OUUW01000002    SPP76618.1    GAPW01002288    JAC11310.1    SPP76619.1    AYCK01000077    AYCK01000078    GEFH01002523    JAP66058.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000027135    UP000192223    UP000053268    + More
UP000076858    UP000002358    UP000002320    UP000261660    UP000095301    UP000261600    UP000215335    UP000261400    UP000007303    UP000264800    UP000054359    UP000265020    UP000268350    UP000261480    UP000028760   

PRIDE

H9JQ91   

Pfam

PF02825   WWE        + More
PF00583   Acetyltransf_1
PF03371   PRP38

Interpro

IPR018123   WWE-dom_subgr        + More
IPR037197   WWE_dom_sf       
IPR033509   RNF146       
IPR004170   WWE-dom       
IPR001841   Znf_RING       
IPR013083   Znf_RING/FYVE/PHD       
IPR017907   Znf_RING_CS       
IPR000182   GNAT_dom       
IPR016181   Acyl_CoA_acyltransferase       
IPR005037   PRP38       

SUPFAM

SSF117839   SSF117839        + More
SSF55729   SSF55729       

Gene 3D

3.30.720.50     3.30.40.10    

ProteinModelPortal

H9JQ91   A0A3S2TCF3   A0A212FDF4   A0A067QMT5   A0A1Y1MFG1   A0A0P5X736   + More
A0A0P4ZQD5   A0A0P5XDU4   A0A0P5EMP3   A0A0P5Y7C5   A0A1W4X0V2   A0A1W4WPV8   A0A0P5DHD9   A0A194PVF7   A0A0P5A333   A0A164RZN7   A0A0P5CMT5   A0A0P5UZV0   A0A0P5UHA1   A0A0P5H3W2   A0A0P5CAC9   A0A0P5XYX0   A0A0P5E034   A0A0P5BP32   A0A0N8AGR0   A0A0P4ZN67   A0A0P5ZDX9   A0A0P4ZVW4   A0A0N8ABH9   A0A0P5D133   A0A0P6AVT2   A0A2R5L7L3   A0A0K8TSM0   K7JAP3   B0WVR8   A0A3Q3EUK7   A0A1I8N709   A0A3Q3KJG9   A0A232ESQ5   A0A1I8N705   A0A3B5B753   Q4SC49   A0A3Q3GM33   A0A087TXR7   A0A3Q2GB12   V9L099   A0A3B0JZT7   A0A023EQF6   A0A3B0JSE7   A0A3B3YX95   A0A096MET2   A0A131XIT5  

PDB

4QPL     E-value=9.28382e-40,     Score=408

KEGG

101738763    K15700 E3 ubiquitin-protein ligase RNF146 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase rnf14

GO

GO:0061630   GO:0072572   GO:0008270   GO:0016055   GO:0016874   GO:0005515   GO:0008603   GO:0008026   GO:0005524   GO:0005234   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

PANTHER

PTHR13417:SF2   PTHR23142  

Length:

233

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09882

Exp number, first 60 AAs:

0.03996

Total prob of N-in:

0.08566

outside

1  -  233

 

 

Pi

201.253639

Theta

20.427963

Tajima's D

0.604694

CLR

0.65381

CSRT

0.556322183890805

Interpretation

Uncertain