Silkworm Genome Informatics Database

Gene

KWMTBOMO06634 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011696

Annotation

PREDICTED:_U3_small_nucleolar_RNA-associated_protein_14-like_[Papilio_xuthus]

Location

Bomo_Chr11(+):11947922-11949878 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.645

CDS

ATGAGAAAACGTAAATCTTTAAAGTTAAACGAAGAAGATTCGGATGGGTCAGGGCAGGGCGCTGAACCAGAAGAATTTCAGGACTCTGGTGAAGATTGGACGCCGGACGCCGATTCGAACGAACCTGCATCTCGTACTGGCAGAAAACGTGTATCAAAGGCACCGGTGAACAACACCAAAAAGAAACGTAAAAACTCATCATCTGAAGAAAGCGAGGGTGAAGGAGAAGAGGATGAAGAAGCCGAGGATGAAGAAGGGGAACTTGATGAAGAAGAAGGATCTGATGATGAGAAAAACGGATCCGATGGAAACAAATCTGATTCAAGTCAATCGAAAGATGTACCAAAGCATTTCCATTCAGGAAATTTTGTCTTGCTGAAATCAGATGTAAAATGGGATGGAGATACTGTAATATCAAAACTTGATGAACTGAACTTGTGGAAAATTGATGGCAAAGCATTATTACAGAAATTTATCCCAATGGAATCAAATGGAAGAGTTTTACACAAATGTACATGTGTGTATTCTGGGTGGAATGTTGACAACCGTGACAATTATTACCCCATAACCGAAATACTGGATCGCAATCCACGCACAGACTCCAAGGAAATATGTGTAGCATTAGACTTAAATGATCTTATCAAAGTTAGAGACAAGTAA

Protein

MRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRKNSSSEESEGEGEEDEEAEDEEGELDEEEGSDDEKNGSDGNKSDSSQSKDVPKHFHSGNFVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRNPRTDSKEICVALDLNDLIKVRDK

Uniprot

H9JQ90 A0A194QNR7 A0A194Q1U6 A0A2A4JRY2 S4NP82 A0A212FDD4 + More
A0A2H1VSI0 A0A2A4JR43 A0A0L7LI20 A0A1A9Z2Z1 A0A1B0G904 B4IYR1 A0A0Q9XLL4 A0A0Q9XG09 B4KV73 A0A0K8UWQ0 A0A0K8WBA5 A0A0Q9XR92 B4LG04 A0A0Q9WWZ5

Pubmed

19121390 26354079 23622113 22118469 26227816 17994087 + More

EMBL

BABH01012000 KQ461190 KPJ07168.1 KQ459590 KPI97375.1 NWSH01000733 + More
PCG74516.1 GAIX01011954 JAA80606.1 AGBW02009074 OWR51742.1 ODYU01003871 SOQ43174.1 PCG74515.1 JTDY01001049 KOB75014.1 CCAG010002956 CH916366 EDV96598.1 CH933809 KRG06634.1 KRG06633.1 EDW19413.1 GDHF01024023 GDHF01021351 GDHF01004538 JAI28291.1 JAI30963.1 JAI47776.1 GDHF01004000 JAI48314.1 KRG06632.1 CH940647 EDW70403.2 KRF84896.1

Proteomes

UP000005204 UP000053240 UP000053268 UP000218220 UP000007151 UP000037510 + More
UP000092445 UP000092444 UP000001070 UP000009192 UP000008792

PRIDE

H9JQ90

Pfam

PF02825 WWE + More
PF13926 DUF4211

Interpro

IPR018123   WWE-dom_subgr        + More
IPR033509   RNF146
IPR037197   WWE_dom_sf
IPR004170   WWE-dom
IPR025451   DUF4211

SUPFAM

SSF117839 SSF117839

Gene 3D

3.30.720.50

ProteinModelPortal

H9JQ90 A0A194QNR7 A0A194Q1U6 A0A2A4JRY2 S4NP82 A0A212FDD4 + More
A0A2H1VSI0 A0A2A4JR43 A0A0L7LI20 A0A1A9Z2Z1 A0A1B0G904 B4IYR1 A0A0Q9XLL4 A0A0Q9XG09 B4KV73 A0A0K8UWQ0 A0A0K8WBA5 A0A0Q9XR92 B4LG04 A0A0Q9WWZ5

KEGG

101738996 no KO assigned | (RefSeq) transcription elongation factor spt5-like

GO

GO:0008270 GO:0072572 GO:0061630 GO:0016055

PANTHER

PTHR13417:SF2

Length:

219

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.34292

outside

1 - 219

Pi

69.007244

Theta

139.990825

Tajima's D

-0.293339

CLR

1.45004

CSRT

0.291685415729214

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	DNYYPITEIIDR	100.00	2e-04
26280517	CQESFIPWIADTEER	100.00	2e-04
25044914	CSWESAQVGCAR	100.00	2e-04
26822097	HFHSGNFVIIK	100.00	0.035
26280517	SDTTPTEWAVFK	100.00	0.035

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics