Gene

KWMTBOMO06633  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011783

Annotation

autophagy_related_protein_Atg8_[Bombyx_mori]

Location

Bomo_Chr11(-):11940181-11940681      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.668 Nuclear   Reliability : 2.103

CDS

ATGAAATTCCAATACAAAGAAGAACATTCATTTGAGAAGAGAAAGGCTGAGGGCGAAAAAATCCGCAGGAAATATCCAGATCGCGTTCCTGTAATTGTAGAGAAAGCGCCGAAGGCTAGGCTTGGAGACCTCGACAAAAAGAAGTATTTAGTTCCGTCTGATTTAACAGTTGGCCAGTTCTACTTCTTGATCCGGAAACGTATTCACCTGCGGCCTGAAGACGCACTTTTCTTCTTCGTGAACAATGTCATTCCACCCACATCTGCAACAATGGGGTCTCTCTACCAAGAACACCATGATGAAGATTTCTTTCTATACATAGCATTTTCCGACGAAAATGTCTATGGAAATTAA

Protein

MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN

Similarity

Belongs to the ATG8 family.

Uniprot

Q2F5R5   A0A0L7LIF5   J7G5G3   A0A1Z2TIV3   I3W7D5   A0A194QP92   + More
S4PX79   S4U811   S4U3I5   I4DJ07   A0A212FDC5   A0A2J7RF63   X5I348   A0A2P8XE72   R4ULD6   A0A1B6C2W9   T1E2N0   A0A1B6GSU5   A0A2H4NI26   Q1W292   D2A3P4   B4N2G9   A0A3B0JF84   B3MSC0   Q9W2S2   A0A023EDG5   B4L2S7   B3NW04   B4R7M5   B4PXZ4   B4IDT6   A0A3G4S8N6   A0A3S3QPM4   A0A1Q3FJN6   B0W6U4   B4MER6   A0A0M4F9U6   B4JK65   A2I460   A0A0E3IQF3   A0A1S3CZM9   B5DLB9   B4H2U2   A0A1W4V2T1   A0A1L8EFI4   C4N190   E0VE87   V5I994   A0A0K8U091   A0A0C9PK21   A0A0A1X8S6   K0BVA5   Q173G7   A0A0P5CZH7   K1PXH7   E2C3G0   A0A0P5C5R6   A0A164PTL5   A0A084WR93   A0A346QR78   W8CBZ1   A0A1Y1M121   A0A336LXS2   Q5MM86   A0A1J1IGW5   A0A0P5RS48   A0A0P5X341   A0A0P5Y131   A0A0L0BZZ9   A0A1A9X7Z3   A0A1B0AJZ0   A0A0L8ICY3   A0A182Y428   D3TLZ5   A0A0P4ZTK1   A0A232FAL2   A0A2C9K2E5   D7RP03   H9XQ24   A0A182VZW5   V9LVC3   V9LV30   W5JNN1   A0A0A9YNQ6   A0A0P5A0Q8   A0A210PX58   A0A182RTH4   A0A2M4C2T3   A0A182MCB0   A0A2M3YYL1   A0A067QS99   A0A182JNN2   A0A2M4A0L9   V4ADG8   R4WR84   A0A151IIQ3   A0A195DNI1   F4X5H4   A0A195BPV8   A0A0J7KM75  

Pubmed

19121390    19470186    20606273    26227816    22830988    28595926    + More
22629397    26354079    23622113    22651552    22118469    29403074    24330624    29125860    18362917    19820115    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24945155    26483478    17550304    25727880    15632085    19576987    20566863    25830018    25348373    17510324    22992520    20798317    24438588    24495485    28004739    26108605    25244985    20353571    28648823    15562597    22771962    20920257    23761445    25401762    28812685    24845553    23254933    23691247    21719571   

EMBL

BABH01012002    DQ311358    FJ416330    FJ595955    ABD36302.1    ACJ46064.1    + More
ACO53446.1    JTDY01001049    KOB75016.1    JN705946    AFP66874.1    MF069154    ODYU01003871    ASA69721.1    SOQ43173.1    JQ739159    AFK91514.1    KQ461190    KPJ07169.1    GAIX01005508    JAA87052.1    JX183217    AGH68882.1    JX183216    AGH68881.1    AK401275    KQ459590    BAM17897.1    KPI97374.1    AGBW02009074    OWR51741.1    NEVH01004413    PNF39469.1    AB856588    BAO58963.1    PYGN01002564    PSN30272.1    KC741165    AGM32989.1    GEDC01029689    JAS07609.1    GALA01000554    JAA94298.1    GECZ01024772    GECZ01004277    JAS44997.1    JAS65492.1    MF038045    ATV91621.1    DQ445535    GEBQ01017747    ABD98773.1    JAT22230.1    KQ971348    EFA05804.2    CH963925    EDW78558.1    OUUW01000003    SPP78872.1    CH902622    EDV34675.1    AE014298    AY122152    AAF46617.1    AAM52664.1    JXUM01098676    JXUM01098677    JXUM01098678    GAPW01006161    GAPW01006160    KQ564439    MH243747    JAC07437.1    KXJ72272.1    QBI60017.1    CH933810    EDW06894.1    CH954180    EDV46137.1    CM000366    EDX17584.1    CM000162    EDX02966.1    CH480830    EDW45744.1    MG948471    AYU75107.1    NCKU01001520    NCKU01001477    NCKU01001475    NCKU01000421    RWS11926.1    RWS12022.1    RWS12025.1    RWS15566.1    GFDL01007311    JAV27734.1    DS231849    EDS36925.1    CH940664    EDW63041.1    CP012528    ALC49070.1    CH916370    EDV99967.1    EF070563    ABM55629.1    KM676434    AJE26300.1    CH379063    EDY72318.1    CH479204    EDW30659.1    GFDG01001460    JAV17339.1    EZ048863    ACN69155.1    DS235088    EEB11693.1    GALX01003330    JAB65136.1    GDHF01032368    JAI19946.1    GBYB01001343    JAG71110.1    GBXI01013843    GBXI01006588    JAD00449.1    JAD07704.1    JQ796071    GAKP01009794    AFS89701.1    JAC49158.1    CH477425    EAT41168.1    GDIP01179406    GDIQ01062927    JAJ43996.1    JAN31810.1    JH817066    EKC26388.1    GL452320    EFN77498.1    GDIP01179405    JAJ43997.1    LRGB01002568    KZS07129.1    ATLV01026002    KE525404    KFB52737.1    MG910480    AXR98468.1    GAMC01004366    JAC02190.1    GEZM01044969    JAV78005.1    UFQS01000289    UFQT01000289    SSX02478.1    SSX22852.1    AY736002    AAW21996.1    CVRI01000047    CRK97673.1    GDIQ01102613    JAL49113.1    GDIP01078565    JAM25150.1    GDIP01066122    JAM37593.1    JRES01001093    KNC25630.1    KQ415974    KOF99368.1    CCAG010016762    EZ422447    ADD18723.1    GDIP01208751    JAJ14651.1    NNAY01000520    OXU27884.1    HM107004    ADI56518.1    JN874925    JN874926    AFH01335.1    JQ410230    AFV99179.1    JQ410231    AFV99180.1    ADMH02000547    ETN65982.1    GBHO01010333    JAG33271.1    GDIP01208750    JAJ14652.1    NEDP02005424    OWF41054.1    GGFJ01010463    MBW59604.1    AXCM01000275    GGFM01000608    MBW21359.1    KK853682    KDQ97907.1    GGFK01000974    MBW34295.1    KB202283    ESO91351.1    AK417177    BAN20392.1    KQ977459    KYN02565.1    KQ980713    KYN14387.1    GL888716    EGI58330.1    KQ976432    KYM87529.1    LBMM01005645    KMQ91336.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007151    UP000235965    + More
UP000245037    UP000007266    UP000007798    UP000268350    UP000007801    UP000000803    UP000069940    UP000249989    UP000009192    UP000008711    UP000000304    UP000002282    UP000001292    UP000285301    UP000002320    UP000008792    UP000092553    UP000001070    UP000079169    UP000001819    UP000008744    UP000192221    UP000095300    UP000009046    UP000008820    UP000005408    UP000008237    UP000076858    UP000030765    UP000183832    UP000037069    UP000092443    UP000092445    UP000053454    UP000076408    UP000092444    UP000215335    UP000076420    UP000075920    UP000000673    UP000242188    UP000075900    UP000075883    UP000027135    UP000075881    UP000030746    UP000078542    UP000078492    UP000007755    UP000078540    UP000036403   

PRIDE

Q2F5R5    Q9W2S2   

Pfam

PF02991   Atg8

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR004241   Atg8-like       

SUPFAM

SSF54236   SSF54236       

CDD

cd01611  GABARAP

ProteinModelPortal

Q2F5R5   A0A0L7LIF5   J7G5G3   A0A1Z2TIV3   I3W7D5   A0A194QP92   + More
S4PX79   S4U811   S4U3I5   I4DJ07   A0A212FDC5   A0A2J7RF63   X5I348   A0A2P8XE72   R4ULD6   A0A1B6C2W9   T1E2N0   A0A1B6GSU5   A0A2H4NI26   Q1W292   D2A3P4   B4N2G9   A0A3B0JF84   B3MSC0   Q9W2S2   A0A023EDG5   B4L2S7   B3NW04   B4R7M5   B4PXZ4   B4IDT6   A0A3G4S8N6   A0A3S3QPM4   A0A1Q3FJN6   B0W6U4   B4MER6   A0A0M4F9U6   B4JK65   A2I460   A0A0E3IQF3   A0A1S3CZM9   B5DLB9   B4H2U2   A0A1W4V2T1   A0A1L8EFI4   C4N190   E0VE87   V5I994   A0A0K8U091   A0A0C9PK21   A0A0A1X8S6   K0BVA5   Q173G7   A0A0P5CZH7   K1PXH7   E2C3G0   A0A0P5C5R6   A0A164PTL5   A0A084WR93   A0A346QR78   W8CBZ1   A0A1Y1M121   A0A336LXS2   Q5MM86   A0A1J1IGW5   A0A0P5RS48   A0A0P5X341   A0A0P5Y131   A0A0L0BZZ9   A0A1A9X7Z3   A0A1B0AJZ0   A0A0L8ICY3   A0A182Y428   D3TLZ5   A0A0P4ZTK1   A0A232FAL2   A0A2C9K2E5   D7RP03   H9XQ24   A0A182VZW5   V9LVC3   V9LV30   W5JNN1   A0A0A9YNQ6   A0A0P5A0Q8   A0A210PX58   A0A182RTH4   A0A2M4C2T3   A0A182MCB0   A0A2M3YYL1   A0A067QS99   A0A182JNN2   A0A2M4A0L9   V4ADG8   R4WR84   A0A151IIQ3   A0A195DNI1   F4X5H4   A0A195BPV8   A0A0J7KM75  

PDB

3M95     E-value=1.22839e-57,     Score=558

KEGG

692938    K08341 GABA(A) receptor-associated protein | (RefSeq) Atg8; autophagy related protein Atg8

PATHWAY

04068    FoxO signaling pathway - Bombyx mori (domestic silkworm)
04136    Autophagy - other - Bombyx mori (domestic silkworm)
04137    Mitophagy - animal - Bombyx mori (domestic silkworm)
04140    Autophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0005737   GO:0006914   GO:0016236   GO:0005829   GO:0005776   GO:0000045   GO:0000421   GO:0031625   GO:0000422   GO:0006995   GO:0050811   GO:0044754   GO:0010506   GO:0019901   GO:0061174   GO:0031396   GO:0044753   GO:0035096   GO:0008340   GO:0031386  

PANTHER

PTHR10969  

Subcellular location

Cytoplasm  

Length:

117

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.67193

Exp number, first 60 AAs:

0.01219

Total prob of N-in:

0.42787

outside

1  -  117

 

 

Pi

195.987792

Theta

179.253829

Tajima's D

0.293712

CLR

116.7585

CSRT

0.450527473626319

Interpretation

Uncertain