Gene

KWMTBOMO06630

Pre Gene Modal

BGIBMGA011784

Annotation

PREDICTED:_ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]

Location

Bomo_Chr11(-):11890140-11894201      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.323

CDS

ATGAACGTAATTGAAAGTATTAAAAAAGATAAAGCTTACCTCAAATGTAAGTTAACTGTAAAGAAGTGGGAAAAATCTTTCATAAGTTTGCATTCCCGGACACCATCAAAATTCGACATAAAAGAAGCTCCACCTAATATAAAGTATGCATATAAAAAGTATTTTCAATTAAAAAGTTCAGCTTTGGAAAATTCATTGACTGTTTGTGAAATAGATGATGAGTTTTCTTCATTCATTGAACCATTCGATGAGAAAGTTGAATACTCAATTCAGGATACTAGTTCGCCGTCGGATGCCAAAATTCCAGAATTACCTAATGGTGCTGAAATAGAAAAATTACTATCAAACGTTCCACTTTCCTTAAACATTGAAACACAACGCAATCAATCTCTGCCTTGCCTTGAAAATTTATCCAAAAAGCTGTTTGTTAACAGAGAATTTACTCTCAGGAATCCTAGAAAAATAGTTTCAGTTAAAAAAAATCAAATTAAACAAGCTGATACCAACTTAAAAAATATCGGTGGCAAAATTGTTGAACATGATTCAATTACACAAGTAAATGAAGATTTTTTGGAAAATGAAGTAAAGAATACTACTATTATCATAAAAAATGATGGTGATAAAAATATTGTTGATGGAACTAAACACATAAAAAAAATCACACACAACTACACAACTAGTGAAAGCATCACCCAAGTTACTAAAACCAATCCTTTAGAGACACATTTGCTGGCTAATCAAAATAACATTCTTCAAAACACCAGGCAACTTGATCAAGCATGGATAGAGCGAGCAGTTGGTCCAAGTTCAGTAACAGGCACCTTCTGTAAAGCAACTACATCTGAACAGTTTGGCATCAGAAATTTAAACACAGTAACCCAAAGTAATGATAAATATTTAGATTTTGTAGAAAATAGTGATTCTGAAGATGAGAATACACTTGATAAACTAAAGCCAGCCCTTAAGAAAAGAAAAATTGAAGAAATTGAACCTGCTGCCAATGAAGGTGTAATTGTTTTGGACAGCTTTGAAACCAAATTAAAATCATCATTCTCTAAAACAAATAATTGTGGAAAAAGAAAAAGATCTGGAGTTTCAAAAAATGATAAAAGTAGAGTAAAAGTGTTATCAAGCAAATGTAATGCCACAAATGATGACCAGCAGCTTCCAGATATAACTGAATTTGTTATGTTTAGCTTAGATAATGACATAGTACCTCGTCACACAGAAGTATCTAACATATTAAAAACTGTTAAACCTCCCAAAACATCAAATGACAACAACTCAGAGGGCTTTGATAATTTGCAGACTAAAATAAAACTAGGGACTCTAAATGATAATTTTGTAAAAGTTAATATTGAAAAAAAAGTTTTTGTCAGAGGGAAGAAAAGTTTTAACTTTTCAAAATATAAAAAACAACAATGGAAAGACAAAAAAGCTTTACATGCTTCCATGGAGTTTCCAGAAGCTGGGAAAATAAAATGTTTTAAATGTGGTAATGCTGGGCATATGGCACGATACTGCACAATACATAAAGCTGAAGGTCTACTACCTTTAGAGAGCTATGATGAAAATGAAATGCTTACATTGGAAGACATGGAAAAATTAGCTTATGGAGAAAATAGTAAAACTAAAACTTTGACTGAGGAACTAAACATAGCTTACACTCCAAGCCAAATTCCTGAAAATTTCATAAAAATGCTAGAAACCAAAGCAGACCCAAATTGTGGAACTGTTAAACCTTTATATCCAAATTACAATGAAGTGAATGATAATGAGCTACAAGAAGATTTATTAAAATTTGGGCACAATCAATTTCGACCAGGACAAGAAAAGGCTATAAAGAGAATTCTATGTGGCATGTCCACACTTTTGATTTTGTCCACTGGCAGTGGCAAGTCACTATGTTATCAATTACCTGCTTATATGTATAGAAAGAAATACAAATGCATTACATTAGTAATATCGCCACTTGTTTCTCTAATGGAGGACCAGGTTTTGAATATGCCTGAATTTTTAAAGGCTGGCTGTTTGCATACCAATCAACCACCAACACTACGTCAAAAAATTATACAATGTTTAAAGGATGGAGAAATAAGTATTCTTTTGATATCTCCAGAAGCTTTAATATCTAGTGATAATTCTAATGGACTAACTGGTCTCTTTAGATCATTGCCTCAAATAGCATTTGCATGTATAGATGAAGCTCACTGTGTTTCTCAGTGGAGTCATAATTTCCGACCAAGTTATTTAATGATTTGTCGTGTATTGAGAGAAAGACTGAATGTAAAATGTATCCTTGGACTGACAGCAACCGCGACACAAACCACCATAAAAAGCATCATAAAGCATATTAGTATACCTGATGGGACATCAGGAGTGATAACTAATCCAACATTGCCAGATAATCTATATTTAACAGTTTCATTTGAGAAAGATAGAGACAAAGGCTTAATATCATTTATAATGTCAGAAAAGATAACTACATTCAATTCTATTATAGTATATTGCATAAGAAGAGATGAATGTGAAAGAATTGCAGCAGTCTTGAGATCATGTTTGCAAACTTCTGTTAAATATTCTACAGAAAAACTAAATAAAAAAAGGAAAAGAATGTCTTATATCGCTGAAGCGTATCATGCTGGAATGTCTGCAGCACAGAGAAAAAAAATTCAAAAAAACTTTATGGATGGAACATTAAGGATCATTGTTGCAACTGTTGCTTTTGGAATGGGAATTAATAAATCAGACATAAGATGTATTATACATTATAACATGCCAAGTAGCTTTGAATCTTATGTACAAGAAGTAGGAAGAGCAGGCCGTGATGGAAAGCCTGCCTATTGTCATATCTTGATGAGTAATATTAACAATGATCAAGATGAAATACTGAAACACATACATTCAAATTCAATAGATAGGCCAACTTTAAGAAAGTTACTTCAAAAATTGTTCATCCCATGTGAATGTTCTGATAAGAAACAAGAATGTAAGGGCCATGAAGTGAGCATACCTATAGATACTGCAGTTGAAGAATTAGATTTACCATCTGAGAACATTGCAACATTATTATGTTATGTCGAACTTCATCCTCAAAATTACATAAAGGTTTTAAATAATGCATACACTCTATGTAAAATTTCTTCATATGGTGGTCCACAAAAAATATTGGAAGCAGCTAAATCTTGTAAACCATTAGCAGTTGCTATTTTGGTAGAAAGTAAAAAAGGATTCAAGTATGCAGATAGCAGTGTTCTAGAATTCAATGTCATAGAAATATCATCTGCAATCGGCTGGGAAAGTGGAATTGTAAAGTACCAGCTAAAGAATTTAGAATGGAAAACAGAATCTGGAATACCAAAAAGATCACATCTGAAAGTAGAATTTAACACTTTGGGCTTTAGAATAAAAGCTCGAGGAGACCTAACCGAATCAGAACTTGATGATGTGTTGGATGACCTCCATAAAACTGTTCTTTTTCAAGAAAAAACTAGACTGTTTCAGTTGGAAGAATGTAATAAATCTTTCAAACACCTTGGCAATATTGGAGTGGAAGACTTAGATGGAGAAAAACACCTAGAAAAATCTAATGAATTAAAGAAAAAAATCTACAGCTACTTTCAGAGAGAAAATGCAATACCAGAAGATATGATATTAGATGTTCGACCTTTGGACACTGACCTTGTCATTTCTGATATAAGAGCTTTGATAGCTTTATATAAAGATTGTAATTTCACTGCAAGAAGTATAGCCAGAATATTTCAAGGAATTTCCTCGCCAAATTATCCAGCAATTGTTTGGGGACGATGTAAATTTTGGCGTTCACATATACATGAAGATTTTAACAGCTTAGTTAAATTAGCTACGCAGCAAATAATTCAAATGAAGATGTAA

Protein

MNVIESIKKDKAYLKCKLTVKKWEKSFISLHSRTPSKFDIKEAPPNIKYAYKKYFQLKSSALENSLTVCEIDDEFSSFIEPFDEKVEYSIQDTSSPSDAKIPELPNGAEIEKLLSNVPLSLNIETQRNQSLPCLENLSKKLFVNREFTLRNPRKIVSVKKNQIKQADTNLKNIGGKIVEHDSITQVNEDFLENEVKNTTIIIKNDGDKNIVDGTKHIKKITHNYTTSESITQVTKTNPLETHLLANQNNILQNTRQLDQAWIERAVGPSSVTGTFCKATTSEQFGIRNLNTVTQSNDKYLDFVENSDSEDENTLDKLKPALKKRKIEEIEPAANEGVIVLDSFETKLKSSFSKTNNCGKRKRSGVSKNDKSRVKVLSSKCNATNDDQQLPDITEFVMFSLDNDIVPRHTEVSNILKTVKPPKTSNDNNSEGFDNLQTKIKLGTLNDNFVKVNIEKKVFVRGKKSFNFSKYKKQQWKDKKALHASMEFPEAGKIKCFKCGNAGHMARYCTIHKAEGLLPLESYDENEMLTLEDMEKLAYGENSKTKTLTEELNIAYTPSQIPENFIKMLETKADPNCGTVKPLYPNYNEVNDNELQEDLLKFGHNQFRPGQEKAIKRILCGMSTLLILSTGSGKSLCYQLPAYMYRKKYKCITLVISPLVSLMEDQVLNMPEFLKAGCLHTNQPPTLRQKIIQCLKDGEISILLISPEALISSDNSNGLTGLFRSLPQIAFACIDEAHCVSQWSHNFRPSYLMICRVLRERLNVKCILGLTATATQTTIKSIIKHISIPDGTSGVITNPTLPDNLYLTVSFEKDRDKGLISFIMSEKITTFNSIIVYCIRRDECERIAAVLRSCLQTSVKYSTEKLNKKRKRMSYIAEAYHAGMSAAQRKKIQKNFMDGTLRIIVATVAFGMGINKSDIRCIIHYNMPSSFESYVQEVGRAGRDGKPAYCHILMSNINNDQDEILKHIHSNSIDRPTLRKLLQKLFIPCECSDKKQECKGHEVSIPIDTAVEELDLPSENIATLLCYVELHPQNYIKVLNNAYTLCKISSYGGPQKILEAAKSCKPLAVAILVESKKGFKYADSSVLEFNVIEISSAIGWESGIVKYQLKNLEWKTESGIPKRSHLKVEFNTLGFRIKARGDLTESELDDVLDDLHKTVLFQEKTRLFQLEECNKSFKHLGNIGVEDLDGEKHLEKSNELKKKIYSYFQRENAIPEDMILDVRPLDTDLVISDIRALIALYKDCNFTARSIARIFQGISSPNYPAIVWGRCKFWRSHIHEDFNSLVKLATQQIIQMKM

Uniprot

H9JQH8   A0A2A4JJV1   A0A194PVF2   A0A194QNT0   A0A3S2LU11   A0A2H1VNZ1   + More
A0A336LR96   B0WK00   A0A0C9QQ21   A0A1Q3EW54   A0A084W2L6   A0A182HF12   N6UM83   A0A1S4FRM4   A0A182IJE2   Q16RM4   E2BI65   A0A182WK02   E2AI15   A0A291S6X5   E9IH68   A0A3L8D9F1   A0A182QZN3   A0A182M862   A0A2Z5TRG4   A0A0J7KIK9   A0A151JSD8   W5JLZ8   A0A195F102   A0A182P6D3   A0A0Q9XGS7   A0A151WHF5   F4WFU9   A0A182RF05   A0A088ATW1   A0A195BFY5   A0A2A3EG45   A0A182JP47   A0A195BYY3   A0A067QLC4   A0A158NL65   A0A2S2Q4Y4   A0A2H8TS21   J9JL98   A0A154P8N5   A0A023EZM8   E0W207   A0A182FD65   E9G3F7   A0A0P5SNN6   A0A0P5UF90   V5H7E0  

Pubmed

19121390    26354079    24438588    26483478    23537049    17510324    + More
20798317    28992199    21282665    30249741    26760975    20920257    23761445    17994087    21719571    24845553    21347285    25474469    20566863    21292972    25765539   

EMBL

BABH01012005    BABH01012006    NWSH01001177    PCG72241.1    KQ459590    KPI97371.1    + More
KQ461190    KPJ07172.1    RSAL01000227    RVE43947.1    ODYU01003588    SOQ42551.1    UFQT01000125    SSX20500.1    DS231966    EDS29544.1    GBYB01005754    JAG75521.1    GFDL01015506    JAV19539.1    ATLV01019633    KE525275    KFB44460.1    JXUM01133165    KQ567940    KXJ69220.1    APGK01026506    KB740635    ENN79822.1    CH477702    EAT37064.1    GL448450    EFN84636.1    GL439621    EFN66923.1    MF433011    ATL75362.1    GL763185    EFZ20087.1    QOIP01000011    RLU16956.1    AXCN02002334    AXCN02002335    AXCM01000891    FX985802    BBA93689.1    LBMM01007054    KMQ90084.1    KQ978530    KYN30298.1    ADMH02001182    ETN63804.1    KQ981866    KYN34061.1    CH933816    KRG07670.1    KQ983120    KYQ47254.1    GL888128    EGI66716.1    KQ976488    KYM83502.1    KZ288255    PBC30688.1    KQ978501    KYM93535.1    KK853297    KDR08798.1    ADTU01019268    ADTU01019269    GGMS01003610    MBY72813.1    GFXV01004985    MBW16790.1    ABLF02027203    ABLF02027204    KQ434846    KZC08279.1    GBBI01004007    JAC14705.1    DS235873    EEB19601.1    GL732531    EFX85996.1    GDIP01137466    JAL66248.1    GDIP01113877    JAL89837.1    GANP01014136    JAB70332.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000002320    + More
UP000030765    UP000069940    UP000249989    UP000019118    UP000075880    UP000008820    UP000008237    UP000075920    UP000000311    UP000279307    UP000075886    UP000075883    UP000036403    UP000078492    UP000000673    UP000078541    UP000075885    UP000009192    UP000075809    UP000007755    UP000075900    UP000005203    UP000078540    UP000242457    UP000075881    UP000078542    UP000027135    UP000005205    UP000007819    UP000076502    UP000009046    UP000069272    UP000000305   

PRIDE

H9JQH8   

Pfam

PF00271   Helicase_C        + More
PF11719   Drc1-Sld2
PF00098   zf-CCHC
PF00270   DEAD
PF00027   cNMP_binding
PF01545   Cation_efflux

Interpro

IPR011545   DEAD/DEAH_box_helicase_dom        + More
IPR021110   DNA_rep_checkpnt_protein       
IPR001650   Helicase_C       
IPR001878   Znf_CCHC       
IPR014001   Helicase_ATP-bd       
IPR027417   P-loop_NTPase       
IPR004589   DNA_helicase_ATP-dep_RecQ       
IPR036875   Znf_CCHC_sf       
IPR000595   cNMP-bd_dom       
IPR018488   cNMP-bd_CS       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
IPR015898   G-protein_gamma-like_dom       
IPR027469   Cation_efflux_TMD_sf       
IPR002524   Cation_efflux       

SUPFAM

SSF52540   SSF52540        + More
SSF57756   SSF57756       
SSF51206   SSF51206       
SSF161111   SSF161111       

Gene 3D

2.60.120.10     1.20.1510.10    

CDD

cd00079  HELICc
cd00038  CAP_ED

ProteinModelPortal

H9JQH8   A0A2A4JJV1   A0A194PVF2   A0A194QNT0   A0A3S2LU11   A0A2H1VNZ1   + More
A0A336LR96   B0WK00   A0A0C9QQ21   A0A1Q3EW54   A0A084W2L6   A0A182HF12   N6UM83   A0A1S4FRM4   A0A182IJE2   Q16RM4   E2BI65   A0A182WK02   E2AI15   A0A291S6X5   E9IH68   A0A3L8D9F1   A0A182QZN3   A0A182M862   A0A2Z5TRG4   A0A0J7KIK9   A0A151JSD8   W5JLZ8   A0A195F102   A0A182P6D3   A0A0Q9XGS7   A0A151WHF5   F4WFU9   A0A182RF05   A0A088ATW1   A0A195BFY5   A0A2A3EG45   A0A182JP47   A0A195BYY3   A0A067QLC4   A0A158NL65   A0A2S2Q4Y4   A0A2H8TS21   J9JL98   A0A154P8N5   A0A023EZM8   E0W207   A0A182FD65   E9G3F7   A0A0P5SNN6   A0A0P5UF90   V5H7E0  

PDB

5LST     E-value=7.23915e-148,     Score=1348

KEGG

101735569    K10730 ATP-dependent DNA helicase Q4 [EC:3.6.4.12] | (RefSeq) ATP-dependent DNA helicase Q4

GO

GO:0008026   GO:0008270   GO:0005524   GO:0003676   GO:0006310   GO:0007186   GO:0008324   GO:0016021   GO:0002164   GO:0051301   GO:0007307   GO:0036292   GO:0006284   GO:0045740   GO:0043140   GO:0003697   GO:0005737   GO:0010971   GO:0006302   GO:0008284   GO:0005634   GO:0000785   GO:0006260   GO:0005694   GO:0006268   GO:0009378   GO:0006281   GO:0032508   GO:0000724   GO:0005234   GO:0006811   GO:0016020  

Length:

1297

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0644400000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00008

outside

1  -  1297

 

 

Pi

177.034812

Theta

202.834932

Tajima's D

-0.853376

CLR

0.513164

CSRT

0.166041697915104

Interpretation

Uncertain