Gene

KWMTBOMO06628  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011785

Annotation

Dehydrogenase/reductase_SDR_family_member_4_[Papilio_machaon]

Location

Bomo_Chr11(-):11856954-11861232      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.683

CDS

ATGTCAAAAACACCGAATTTTGTTCGTGCAAATCACAATGATAGATTAAAAGGAAAAGTGGCGATTGTAACGGCATCCACCGAAGGGATTGGCTATGCAATCGCAAAAAGGTTGGGTCATGAAGGCGCTTCAGTCGTCATAAGCAGTAGAAAAGAAGATAATGTTGAAAACGCAGTTAAAAGCTTACGCAGCGATGGTATTACAGTAGAAGGAATAGTTTGTCATGTTGCAAATTCAGATCATAGAAAAAAATTGTTTGAAGTGGCTAAAAGCAAGTTTGGTGGCTTGGATATTCTTGTGTCGAATGCGGCAGTCAATCCAACAGTTTCTCCTATTTTAGAGACGGATGAACAAGTATGGGACAAGATATTCGAAATAAATGTAAAGAGTTCATGGCTATTAGCCAAAGAAGCGTACCCTGAGTTAATTAAAAGAGGAGGTGGAAACATTGTGTTTATTTCTTCAATTGCTGCATACCAGCCTATGGAGCCTTTAGGTGCCTACAGCGTTAGTAAAACGACACTTCTAGGATTAACAAAAGCAATAGCTAATGAAGTAGTCCATGACAATATAAGAGTAAATTGTGTCGCACCTGGAATAGTTGCAACAAAATTTGCTTCTGCAGTTAGTATTTCATTTAATTTATAA

Protein

MSKTPNFVRANHNDRLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIANEVVHDNIRVNCVAPGIVATKFASAVSISFNL

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JQH9   A0A194QUE6   A0A2H1VNY5   A0A194PWI4   D2SNW0   A0A2A4JK89   + More
H9JNK4   A0A3S2L990   A0A212EM40   S4PFW6   A0A182RSN1   A0A182MEK3   A0A182NHV8   A0A1B6L3X8   A0A182WJ87   A0A182I3A3   A0A182X3R6   A0A182VMY9   A0A182XYV9   A0A182PQF5   A0A182KRB2   Q7QJE4   A0A084WN98   U5EWL2   A0A1B6F9X4   A0A182IN68   A0A2J7QXC6   A0A182UHE1   D6WFA3   A0A182JV87   A0A182QY63   A0A1B6C7C6   W5JPB4   A0A0T6AUL9   A0A1Q3FJU4   A0A2M3ZBF2   R4WDM8   A0A1S4FCV9   A0A2M4BW22   A0A2M4BW41   A0A182FF41   Q176Z2   A0A182GXS7   B0WXE6   A0A0P6FDZ5   A0A182G5T3   A0A2M3ZJG7   A0A1J1I894   E9FVF3   A0A023FA77   A0A067QR58   Q6DJN9   A0A1S4ECP8   A0A087UTH3   A0A1L8HYS5   A0A0N8CHN7   A0A0N8DC99   A0A0N8BJS9   A0A0N8A3V0   A0A0P6I897   A0A023EL45   A0A0P5M687   A0A336LXI2   A7STD1   A0A0P5BVG2   A0A0P5UIU1   A0A0P5T9G6   A0A0P5AJQ7   A0A0P5JEB6   A0A224XXG9   A0A0N8CAM7   A0A0P5UCX3   A0A293MZT7   Q5FVX2   A0A0P5ULN5   A0A0M3QVW0   A0A2R5LCS1   A0A0V0G5D1   A0A0N8D0W8   D6WFA2   A0A2B4S7B5   A0A0K8RNI1   F7A1E4   A0A182SN43   A0A0K8SRA0   A0A0P4W1N2   A0A131YP14   A0A2G8K236   A0A224YMZ1   A0A0N8EGT2   A0A0P6BMU8   A0A0K8SGQ3   A0A0K8WF41   A0A0A9XYN5   B4KWZ6   A0A2P6K321   T1KNI7   A0A0A9Z575   A0A0A1XNH2   A0A1A9WBP1  

Pubmed

19121390    26354079    20074338    22118469    23622113    25244985    + More
20966253    12364791    14747013    17210077    24438588    18362917    19820115    20920257    23761445    23691247    17510324    26483478    21292972    25474469    24845553    27762356    24945155    17615350    20431018    26830274    29023486    28797301    25401762    17994087    25830018   

EMBL

BABH01012008    BABH01012009    KQ461190    KPJ07176.1    ODYU01003588    SOQ42549.1    + More
KQ459590    KPI97368.1    EZ407244    ACX53801.1    NWSH01001177    PCG72239.1    BABH01035219    RSAL01000414    RVE41830.1    AGBW02013918    OWR42562.1    GAIX01006390    JAA86170.1    AXCM01005343    GEBQ01021535    JAT18442.1    APCN01000204    AAAB01008807    EAA04619.4    ATLV01024580    KE525352    KFB51692.1    GANO01001366    JAB58505.1    GECZ01022730    JAS47039.1    NEVH01009382    PNF33231.1    KQ971319    EFA00284.1    AXCN02000379    GEDC01027926    JAS09372.1    ADMH02000549    ETN65951.1    LJIG01022786    KRT78724.1    GFDL01007282    JAV27763.1    GGFM01005125    MBW25876.1    AK417828    BAN21043.1    GGFJ01008134    MBW57275.1    GGFJ01008138    MBW57279.1    CH477380    EAT42217.1    JXUM01020768    KQ560581    KXJ81809.1    DS232163    EDS36476.1    GDIP01095805    GDIQ01050264    JAM07910.1    JAN44473.1    JXUM01043910    KQ561380    KXJ78774.1    GGFM01007891    MBW28642.1    CVRI01000039    CRK94633.1    GL732525    EFX88544.1    GBBI01000326    JAC18386.1    KK853119    KDR11131.1    BC075136    AAH75136.1    KK121532    KFM80662.1    CM004466    OCU01254.1    GDIP01130751    JAL72963.1    GDIP01047855    LRGB01000024    JAM55860.1    KZS21785.1    GDIQ01170827    JAK80898.1    GDIP01185137    JAJ38265.1    GDIQ01033977    JAN60760.1    GAPW01003678    JAC09920.1    GDIQ01163973    JAK87752.1    UFQS01000164    UFQT01000164    SSX00677.1    SSX21057.1    DS469794    EDO33036.1    GDIP01183781    JAJ39621.1    GDIP01112405    JAL91309.1    GDIP01130750    JAL72964.1    GDIP01198488    JAJ24914.1    GDIQ01200808    JAK50917.1    GFTR01003563    JAW12863.1    GDIQ01098443    JAL53283.1    GDIP01132105    JAL71609.1    GFWV01019937    MAA44665.1    BC089728    AAH89728.1    GDIP01111209    JAL92505.1    CP012525    ALC43079.1    GGLE01003140    MBY07266.1    GECL01002949    JAP03175.1    GDIP01079703    JAM24012.1    EFA00285.2    LSMT01000163    PFX24979.1    GADI01001674    JAA72134.1    AAMC01116011    GBRD01010165    JAG55659.1    GDRN01079876    JAI62319.1    GEDV01008711    JAP79846.1    MRZV01000964    PIK42067.1    GFPF01007149    MAA18295.1    GDIQ01028212    JAN66525.1    GDIQ01241351    GDIP01027309    JAK10374.1    JAM76406.1    GBRD01013862    GBRD01013861    JAG51965.1    GDHF01002645    JAI49669.1    GBHO01019118    JAG24486.1    CH933809    EDW18617.1    MWRG01034236    PRD20721.1    CAEY01000277    GBHO01003177    GBHO01003174    JAG40427.1    JAG40430.1    GBXI01001443    JAD12849.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000283053    UP000007151    + More
UP000075900    UP000075883    UP000075884    UP000075920    UP000075840    UP000076407    UP000075903    UP000076408    UP000075885    UP000075882    UP000007062    UP000030765    UP000075880    UP000235965    UP000075902    UP000007266    UP000075881    UP000075886    UP000000673    UP000069272    UP000008820    UP000069940    UP000249989    UP000002320    UP000183832    UP000000305    UP000027135    UP000079169    UP000054359    UP000186698    UP000076858    UP000001593    UP000092553    UP000225706    UP000008143    UP000075901    UP000230750    UP000009192    UP000015104    UP000091820   

PRIDE

H9JQH9    H9JNK4   

Pfam

PF00106   adh_short

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR029511   DHRS4-like       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JQH9   A0A194QUE6   A0A2H1VNY5   A0A194PWI4   D2SNW0   A0A2A4JK89   + More
H9JNK4   A0A3S2L990   A0A212EM40   S4PFW6   A0A182RSN1   A0A182MEK3   A0A182NHV8   A0A1B6L3X8   A0A182WJ87   A0A182I3A3   A0A182X3R6   A0A182VMY9   A0A182XYV9   A0A182PQF5   A0A182KRB2   Q7QJE4   A0A084WN98   U5EWL2   A0A1B6F9X4   A0A182IN68   A0A2J7QXC6   A0A182UHE1   D6WFA3   A0A182JV87   A0A182QY63   A0A1B6C7C6   W5JPB4   A0A0T6AUL9   A0A1Q3FJU4   A0A2M3ZBF2   R4WDM8   A0A1S4FCV9   A0A2M4BW22   A0A2M4BW41   A0A182FF41   Q176Z2   A0A182GXS7   B0WXE6   A0A0P6FDZ5   A0A182G5T3   A0A2M3ZJG7   A0A1J1I894   E9FVF3   A0A023FA77   A0A067QR58   Q6DJN9   A0A1S4ECP8   A0A087UTH3   A0A1L8HYS5   A0A0N8CHN7   A0A0N8DC99   A0A0N8BJS9   A0A0N8A3V0   A0A0P6I897   A0A023EL45   A0A0P5M687   A0A336LXI2   A7STD1   A0A0P5BVG2   A0A0P5UIU1   A0A0P5T9G6   A0A0P5AJQ7   A0A0P5JEB6   A0A224XXG9   A0A0N8CAM7   A0A0P5UCX3   A0A293MZT7   Q5FVX2   A0A0P5ULN5   A0A0M3QVW0   A0A2R5LCS1   A0A0V0G5D1   A0A0N8D0W8   D6WFA2   A0A2B4S7B5   A0A0K8RNI1   F7A1E4   A0A182SN43   A0A0K8SRA0   A0A0P4W1N2   A0A131YP14   A0A2G8K236   A0A224YMZ1   A0A0N8EGT2   A0A0P6BMU8   A0A0K8SGQ3   A0A0K8WF41   A0A0A9XYN5   B4KWZ6   A0A2P6K321   T1KNI7   A0A0A9Z575   A0A0A1XNH2   A0A1A9WBP1  

PDB

3O4R     E-value=1.24585e-53,     Score=527

KEGG

101739283    K11147 dehydrogenase/reductase SDR family member 4 [EC:1.1.-.-] | (RefSeq) dehydrogenase/reductase S

PATHWAY

00830    Retinol metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0016491   GO:0004090   GO:0016021  

PANTHER

PTHR43943:SF8  

Length:

215

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.34729

Exp number, first 60 AAs:

0.04432

Total prob of N-in:

0.12799

outside

1  -  215

 

 

Pi

5.980934

Theta

6.541683

Tajima's D

-0.647931

CLR

2.580443

CSRT

0.210139493025349

Interpretation

Uncertain