Silkworm Genome Informatics Database

Gene

KWMTBOMO06621 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011788

Annotation

PREDICTED:_chromobox_protein_homolog_5-like_[Amyelois_transitella]

Location

Bomo_Chr11(-):11786140-11792282 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.686

CDS

ATGAGAAAAATATCAAAAAATCGTACAGATGATGATGTAGTATCATCTACTAATGGATCTTTGTTAAATGACGATCAAACTGCGACGGAGAACAAAACTGTCGAATCTGTAACTGATGAAAGCGTCGATCAAAACAATGATGATTTTTCGAACACTTCCAAAGAAACTAAAAGAGGCAAATCTGGCAAAGGAAAAACAAAGAAAAATAAAGCGGCAAAAGACAAAAGTGTCGTTGAAGAAGAATATGAGGTCGAGAAAATTCTTGATTCTAAGAAGATTAAAGGCAAACTACATTATTTGATTCGCTGGAAAGGATATTCTGCAGACAGTGATACTTGGGAACCTGAGCAAACTTTGTCTTGTCCTGAACTAATCGGAAAATTTAATGAAGAAAAGGAGAATTCTAAAAATAAGGAACGAAAACCTAGTGCTGCTCTTAAAAGAAAATCAAAAAAGACAAAAGAAACTAAAGTGCCAGCAAAAAGAGCTAAATCTCAATGGGACACTAGTGCAGATGAAAATGCTGAATATGAGGTCGAGCGTATCTTAGAAGTACATCACAAGAAAAATGGAAAAAGAGAATTTTTGATCCATTGGAAGGGCTGGTCTAGCAAGTTTGACTCATGGGAACCTGAGAGCAACCTGAACTGTTCAGAACTCATAAAGAAGTTCATGGATAAAGTGAGCAGCGCCCGTTCATTGGATTCCCGAAATTTGAGAGTTGCTCCGGAGACTACAAACCGCTTCACGTTGCAAGATCCAAGCTCAGGGCGTCGTCTTAGTAAGAGACGTGGACAGCGTCAAAGGGTGCGTTATGATAATGCCGAGTAA

Protein

MRKISKNRTDDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFSNTSKETKRGKSGKGKTKKNKAAKDKSVVEEEYEVEKILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKFNEEKENSKNKERKPSAALKRKSKKTKETKVPAKRAKSQWDTSADENAEYEVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSELIKKFMDKVSSARSLDSRNLRVAPETTNRFTLQDPSSGRRLSKRRGQRQRVRYDNAE

Uniprot

U3U9V0 H9JQI2 A0A2A4IVL0 A0A2H1VNY3 A0A212FJK7 S4PIB2 + More
A0A194PX69 A0A194QQF0 I4DQ71

Pubmed

19121390 22118469 23622113 26354079 22651552

EMBL

AB812549 BAO00803.1 BABH01012016 NWSH01006993 PCG63163.1 ODYU01003588 + More
SOQ42540.1 AGBW02008266 OWR53890.1 GAIX01000244 JAA92316.1 KQ459590 KPI97359.1 KQ461190 KPJ07185.1 AK403962 BAM20061.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240

PRIDE

U3U9V0 H9JQI2

Pfam

PF00385 Chromo

Interpro

IPR000953   Chromo/chromo_shadow_dom        + More
IPR017984   Chromo_dom_subgr
IPR023780   Chromo_domain
IPR023779   Chromodomain_CS
IPR016197   Chromo-like_dom_sf

SUPFAM

SSF54160 SSF54160

CDD

cd00024 CHROMO

ProteinModelPortal

U3U9V0 H9JQI2 A0A2A4IVL0 A0A2H1VNY3 A0A212FJK7 S4PIB2 + More
A0A194PX69 A0A194QQF0 I4DQ71

PDB

3FDT E-value=1.70371e-07, Score=131

KEGG

101740470 no KO assigned | (RefSeq) chromobox protein homolog 5-like

GO

GO:0005634

Subcellular location

Nucleus

Length:

276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.35663

outside

1 - 276

Pi

170.754519

Theta

176.469003

Tajima's D

-0.498425

CLR

1260.697031

CSRT

0.246337683115844

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics