Gene

KWMTBOMO06620

Pre Gene Modal

BGIBMGA011688

Annotation

PREDICTED:_vacuolar_protein_sorting-associated_protein_8_homolog_[Bombyx_mori]

Location

Bomo_Chr11(+):11769713-11778595      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.693

CDS

ATGGATCTACTAAAAACACCGTCTGTTCAGTCATTGTTAGATTCTGACTTAGAATCCGTAGAAAGCCTTCAATATCTAGATATAGAAGAGCTAGATGAAATAGAATATGCTCTCCCTGCCATTGATGCACCAACACTAGCTGAAGTCTTGTGTGTGTCAGAAGAAGAAGAAATTAAAAATGTACAAAATAAAGAAGAACCAGTTTCTTGTTCACCACTACAGATTGATTTTTTACAAGCAGTCTCCCAACAACTTATACAAGCACAGGAGAGGTCTTCAACAGGATTTGCTACTGTCTTAAGTACTGGCACAGAGGGAAAACTAACTGTAGGAACAGCTCATGGTCATCTCCTTTCTTTCTATGAACAAACTTTAAGATGGGTGTGTGATCAGAATACAGACGTTGGTGCAGTTTCTTGTTTATCCTACAACAAGGATAGTACACGGCTTCTTGCTGGATATGCAAGAGGGCTCATATGTCAATATGAGAGTATTAAAGGAACAGTACTAAGGCGTTTAACTCTGGGTGGTGAATTATGGGGTATTTTAAGAGTAACATGGGCAGGTACTTCAGGGCTTGCGCTTGATACAGGTGGATCAGTTTGGTTGATCAAATTCTCAAGACCGTTAGGAGTTCGTTCAGCACGTACTTCTTGTTTATTTTCTGGTGCTAGAGGAGAAGTCGTTGCCATGTCAGCACGTGATGCGCGTATATTAGCACTCGCAACACTTTCACGTGTAATAATTGTAGCGGGTGGTTGCGCCGCAGGGGTGAAACTGAGTGGTCCTCCTGATACTCTTCCTGTTATAGAATGGTCTGAGACAGATAACCGAATATTGATCTGCGCCCGCGCTAATACTTTACAATGGCTATCAGTTCACATTACAGGGTCGTCTATATCATTACGACCGCTACACCGGGCTGAGCTAAAAATGCCGCCTTTATGGCTCGGATGGTTGGGAGGAAATCTGGCAATTCTTGATTCGGATGAGAAATTACGAATTTGGGGAGATGAATACGATAAACCATTAGATTTATCTTACATTGAACCTGTTTATGCTTCAGCATTTTTTAAAGGTCATTGGACAGACGGACGTGTTTCCAGAGCATTGTGTACAGCTGGCGTCAATGCTCTGGGAGGAGCATCCATCGCAAATGGTACACTATCTTTATTAGGCCGAAAAGGTGTGGTGCGGGTCAATCCACGCGATCTTCTAGCGAGAGTACAAGCATTTCTGACGTCTGGCCGCTATTTACAAGGGCTGCGGCTGTTATGTGGTACACAAGGAGCGGAAGCTACAGCGATAGCTTCTCAATTTATTGACAATATATGCGCCAGACCCCATATATTAGGCAATAAACACATTGCCGACCAAACAGTCAAAATATGTCTGAAATTCGGATTAAACGAGGAATTATGGGGAAAACTGTGGGAGCAATGTTCTAGCGAAAAAGAATTCGTTGAAGCGCTAGGGGACGCAATAGTGCGCGATGAATTATCTGTCGCACCACCTTCACCAGATTGCACACAGGCACTGATTGAGCGTCTGGCGGAGTTTGAACCAGAATTAGTAGAGAGAGTTCTGGCTTCTCTCCCCCTCACGTCTCTGGACCCGCATCGTGCGAGCGTATTCACACGGGAGAAAGGTCTTTGGCGCGGTGTAGGTGCGATCGCCGCGGCTTTGGGTGGTTGTGCGGGCGCGATGCGGGAGCTGTGCGCGCACACGCGGCGCTCGTGCGGCGCGCGCTGCGAGTGTGCGGGCGCGGCGCTGCTGGTGACGGCGGCCGACGCGCTGGCGGGCCGGGCGGCCGGCGGCCGGGACCTCCCGTCCCATGCGCGCCCTTCAGCAAGACACGACGCTCTACACGCGCTGCTCTCCGACGAGGGTGGTGAGGGAGGTCGGTCCCCGCTGCGCGTGCTGACGGAGCACGACGGGAGCGCGGCGGTGCGGTTGTTGGAGCAGAGCGCTCGCGACCCTCCCTTCGCCGGACCCCTCGCCAAACAAAACCGGCTGCGGGTCGCAAGACATCTCCTCGCCTTTGCCAAAGATTTACCGCATCCAGATGATAGAACGGAAATTTTAGAATTTTTAACCGGTCAATTAAATTCCGGGGCCCTTCCGAACGACCCCGAGGTGTTAAAGGAGTTGGAGGAAGTGGCGCGCGGCACGCGGGGGGAGCGCGCCGACCGCGCCTGGCTCGCCCTGCTGCAGCGCGCGCCCCCGCGCCGCCCCGCGCTGCACGACCGCCCGCGCATACTCTGCCGCCTCGATGTACTGCAAGCACAACACCAAACCGTCCTCCCTTTATTTTTTAAAATAGAAGAACCCTCGGATGTTGACATTGATGAACTTTATGAATACCTGAGATGTCGCGTTAGCGCGGGGCCGGAGGCAAAAGAGCAGATCGAACCGTATCTATCAAGACTGATCGTACTAAGACCGCGGGCGGCCGCCGCCTTGTTTGGTGAGATTTTCGAGAATTCGATCGCAACCGTTCTTGCTTCACTGGCGAACGTCGAAGCCGTAGAATTTGCTGAGTCTCTAAAAACATGTGGCCATCTCAAAGGCGATGCCGCCGCCGTACACGTTCGAAACTTGTGCATTCTTCGTCCTGACCACGTCCAGAATTTTTTACGGGAAAACGTCGGCATAGTCAGACCTGAAGAAGCCCTTTCGATTGTGCGGGAACTCGGACCAGAAGATGCGGTACCTCACTGTTTAGAGGCGGCCGGAGACCCAAGTGCCGCGCTCGACGTCCTGCTGCGCCTGGCCGCCTCCACCGACGATAGAATCTTGGCAACGCGATACGCACTCGAAGCCGGTGACTTGTGCACCCGCGTCACGCCGACCGTTCCTCCGTCCGTGGCCACGGACATGTGGGCCCGGTTACTGAAAAACGCAAAGTTCGCGCCTCCCGCTCTCATTTTAGAGGCGGTCGCACATTTACCCGTCGACGCAGCCGTCGATAAAACTTGCGAATCATCAGAAGTAGCTTTGGCGATTCTGGCCTGCGCTGCCAGCAGACGAAGCGGGTGGGCATGTGCGGCAAGGATAATGGGCAGAGAGGCTCACGAAGCACTAGCTCTAGCGCTGAGAAAGGCGGGTCGTGGCCGGGCTGTGCGCGGGCGGTGCGTGCGGTGCGGCGCGCAGCTGTCGCGTGACGCGGCGGTGCTGGCGACGCACTGCGGCCGCGCCTGCCACGCGACGTGCGGCGCCGAGCCTCGCTGCGGTTGGTGCGGCGCCCGCGCGTCCGACGATGTATTCTCCTTCAACACGCGTTCCCCACGTCGCCCGGCATCGCCAGCAACAGAATTTACCTTATTATTGGTCGCTCCGCCGAGACCGGACTTAGAAGGCTCAGTGTGA

Protein

MDLLKTPSVQSLLDSDLESVESLQYLDIEELDEIEYALPAIDAPTLAEVLCVSEEEEIKNVQNKEEPVSCSPLQIDFLQAVSQQLIQAQERSSTGFATVLSTGTEGKLTVGTAHGHLLSFYEQTLRWVCDQNTDVGAVSCLSYNKDSTRLLAGYARGLICQYESIKGTVLRRLTLGGELWGILRVTWAGTSGLALDTGGSVWLIKFSRPLGVRSARTSCLFSGARGEVVAMSARDARILALATLSRVIIVAGGCAAGVKLSGPPDTLPVIEWSETDNRILICARANTLQWLSVHITGSSISLRPLHRAELKMPPLWLGWLGGNLAILDSDEKLRIWGDEYDKPLDLSYIEPVYASAFFKGHWTDGRVSRALCTAGVNALGGASIANGTLSLLGRKGVVRVNPRDLLARVQAFLTSGRYLQGLRLLCGTQGAEATAIASQFIDNICARPHILGNKHIADQTVKICLKFGLNEELWGKLWEQCSSEKEFVEALGDAIVRDELSVAPPSPDCTQALIERLAEFEPELVERVLASLPLTSLDPHRASVFTREKGLWRGVGAIAAALGGCAGAMRELCAHTRRSCGARCECAGAALLVTAADALAGRAAGGRDLPSHARPSARHDALHALLSDEGGEGGRSPLRVLTEHDGSAAVRLLEQSARDPPFAGPLAKQNRLRVARHLLAFAKDLPHPDDRTEILEFLTGQLNSGALPNDPEVLKELEEVARGTRGERADRAWLALLQRAPPRRPALHDRPRILCRLDVLQAQHQTVLPLFFKIEEPSDVDIDELYEYLRCRVSAGPEAKEQIEPYLSRLIVLRPRAAAALFGEIFENSIATVLASLANVEAVEFAESLKTCGHLKGDAAAVHVRNLCILRPDHVQNFLRENVGIVRPEEALSIVRELGPEDAVPHCLEAAGDPSAALDVLLRLAASTDDRILATRYALEAGDLCTRVTPTVPPSVATDMWARLLKNAKFAPPALILEAVAHLPVDAAVDKTCESSEVALAILACAASRRSGWACAARIMGREAHEALALALRKAGRGRAVRGRCVRCGAQLSRDAAVLATHCGRACHATCGAEPRCGWCGARASDDVFSFNTRSPRRPASPATEFTLLLVAPPRPDLEGSV

Uniprot

H9JQ82   A0A3S2TC06   A0A194PWH2   A0A212FJK5   A0A2H1WPB8   A0A1L8DVX0   + More
A0A336MXD4   A0A336MK58   A0A336L1C9   A0A1I8PZL4   A0A0M4EFX7   A0A2A3E2R2   B4KVG3   B4H1B1   Q29FH3   A0A0C9QD36   B4LIA9   A0A026W0K8   B4N5I8   A0A0J7L588  

Pubmed

19121390    26354079    22118469    17994087    15632085    24508170    + More
30249741   

EMBL

BABH01012017    RSAL01000506    RVE41511.1    KQ459590    KPI97358.1    AGBW02008266    + More
OWR53889.1    ODYU01010072    SOQ54915.1    GFDF01003506    JAV10578.1    UFQS01003365    UFQT01003365    SSX15552.1    SSX34916.1    UFQS01001291    UFQT01001291    SSX10149.1    SSX29871.1    SSX10150.1    SSX29872.1    CP012525    ALC43227.1    KZ288419    PBC25990.1    CH933809    EDW18406.1    CH479202    EDW30088.1    CH379067    EAL31282.2    GBYB01001224    JAG70991.1    CH940647    EDW69676.1    KK107503    QOIP01000006    EZA49590.1    RLU21299.1    CH964101    EDW79627.1    LBMM01000700    KMQ97713.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000095300    UP000092553    + More
UP000242457    UP000009192    UP000008744    UP000001819    UP000008792    UP000053097    UP000279307    UP000007798    UP000036403   

PRIDE

H9JQ82   

Pfam

PF12816   Vps8        + More
PF12894   ANAPC4_WD40
PF00637   Clathrin

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR011047   Quinoprotein_ADH-like_supfam       
IPR025941   Vps8_central_dom       
IPR001841   Znf_RING       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR024977   Apc4_WD40_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR000547   Clathrin_H-chain/VPS_repeat       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       

Gene 3D

2.130.10.10     3.30.40.10    

ProteinModelPortal

H9JQ82   A0A3S2TC06   A0A194PWH2   A0A212FJK5   A0A2H1WPB8   A0A1L8DVX0   + More
A0A336MXD4   A0A336MK58   A0A336L1C9   A0A1I8PZL4   A0A0M4EFX7   A0A2A3E2R2   B4KVG3   B4H1B1   Q29FH3   A0A0C9QD36   B4LIA9   A0A026W0K8   B4N5I8   A0A0J7L588  

KEGG

101736109    K20178 vacuolar protein sorting-associated protein 8 | (RefSeq) vacuolar protein sorting-associated

GO

GO:0005623   GO:0016192   GO:0006886   GO:0005769   GO:0006897   GO:0034058   GO:0007032   GO:0033263   GO:0005515   GO:0016805   GO:0016787   GO:0004003   GO:0006289   GO:0006367   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

Length:

1122

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.33117

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00605

outside

1  -  1122

 

 

Pi

224.655762

Theta

203.077549

Tajima's D

-1.587769

CLR

0.473264

CSRT

0.0514974251287436

Interpretation

Uncertain