Gene

KWMTBOMO06608

Pre Gene Modal

BGIBMGA011794

Annotation

PREDICTED:_cirhin_[Amyelois_transitella]

Location

Bomo_Chr11(-):11538264-11552442      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.213 PlasmaMembrane   Reliability : 1.114

CDS

ATGGCTACTAGCGTACATCGTATTCGTTATTATAATCCCCAACCAACCCCAGTGAATTGTATCGCTTATAATAAATTAAATAAACAATTGTCCCTCGCGAGGAAAGATTCAAGTATTGAAATATGGGACATGACACATTTCCCATTCCTCTTAAAATTCATACCTGCAGTAAAGGACGGCTCAGTAGAAGCTCTAGGCTGGGTGAAAGACAGACTGCTTACAACCGGATTAGGCGGTGCATTAGTTGAATGGAATCTTGAAGAAATGTGTATAAGAAATACAATATTATTAACTGGATATGCTGCTTGGTGTCTTGATGTTAGCCCAGACAATACATTAGTAGCTGTTGGTACTGAACAAGGCTATGTCAACTTGTATAATGTTGAAAATGATGATATTATCTACAAGAAGTTGTTTGACAAACAGGAAGGTAGAATTCTTTGCTGCAAGTTTAATGAAACAAGCAGCATACTTGTTACAGGGTCAGTAAATACAATTAGGGTATGGAATGTCGAGACTGGACACGCAACTACACGTATATCAGTAAGCAGACGGGGTAAAGAAGTTATTGTTTGGTCCCTTGTTACACTTGAGAACAATATTATTGCATCGGGTGATAGTTTGGGTCGACTCACACTGTGGGATGGCAATACAGGTGATGAGATTGAATCATTTATTAGTCATAAAGCAGACATCTTAACAATAGCAGTGTCTGAAGACAAAAATAATTTATTCTGCAGTGGAGTGGATCCAACCATAATACAATTTAGGAAAATTAAGAAGTCTGACTCTGCAGATGAGCAATGGGTTAAGAGTTATCAAAATTCCATAAATCAGCATGATGTAAGAGATATTGCAGTATTGGATCAAAAAGTATTGTCGGTTGGTGTTGATGGATACATCTCAACATTTCATTATGTTCGAAAAGGATTTCAACGAATACCACATTTGTTGCCAACACCCAGATCATTGGTGTGTTCTTCCAAGAAATTTTTACTTTTAAGGTACAGTAATCATTTAGAAGTTTGGAAACTGGGAGCATTTCTAAAAGATAAATCAGGAAGGCCTGTAGCAGAACCTGCAAATGTAATCATTAAAAACAAAATAAATACAGAAAATAATCATTCAGACTGCGAGAAAGTAAATGAAATGTTAAAAATATCTGAAAACCCTGTGAAACTTCTATCTCTGCAGACAAAAGGAAAAAAACAGATTCAGTCATGTGCCATTTCACCAAATGGAGAGCTTATCGTTTACTCCACAGAGAGTCACACAAGGATGCTTAAATTGGATAGTGATGACGAATCGAATGTATATTTATCTAAAGTCATATTAAATGGTTCAATAACGACATGTAGCCATTTCGCTTTCACAGAAGACTCTAAAGTGTTGATCGTATATAACGCGGGTACCATCAGTTTCCTTCAAGTGGATCCTGAAGCAGGCGTCACCGTTACACAGACTATCAACACTAAAAAACATTTAAGTTGCAAATCAATATTGCATTTTCAAATATCAAAGAAATGTCCTAGCAATAAAGTGTATTTAGTGGTAGCGGACACACAAGGTGATATAGTAATATGGACACAAATTGGAAAGAAATTCGAACACTATATAACATTGCCGAAATATCATTGTGTACCATCGGCCATGGTTGTCGATGCCGAAAAGGAGACTTTGATAGTAGCATACGTTGACAGAAAGGTCGTAGAATATGAATTGTTCGAGAAAAAATTCAGTGATTGGCCCGGCTCGGCCATGCCCCCCGTGTGGTACGACACGAAGCAGTGCGTGCTGTCCGTACACCCGCACCCGAGCGGCCAGTCCGTCGTGTTCCAACACTTGAGAGATCTGTTCGTATTGGACAGGAAAGCGCAGTTTGAAATGGAGCCAACCAAAAAGAAGAAATCGGCGGACGCAGGCGAAATGAATCTAGGTTATCATATTCTTCCCATGAAGTATCTCTCCGATTTTTATTGGCTCGGCAAGAGTGAAGCTGTTACGGTCGAGATACTCCCAGAAAATATAATGTCAATGTTACCTCCCGTGGCGATAAGAAATAAACGAAGTGTTAATTAA

Protein

MATSVHRIRYYNPQPTPVNCIAYNKLNKQLSLARKDSSIEIWDMTHFPFLLKFIPAVKDGSVEALGWVKDRLLTTGLGGALVEWNLEEMCIRNTILLTGYAAWCLDVSPDNTLVAVGTEQGYVNLYNVENDDIIYKKLFDKQEGRILCCKFNETSSILVTGSVNTIRVWNVETGHATTRISVSRRGKEVIVWSLVTLENNIIASGDSLGRLTLWDGNTGDEIESFISHKADILTIAVSEDKNNLFCSGVDPTIIQFRKIKKSDSADEQWVKSYQNSINQHDVRDIAVLDQKVLSVGVDGYISTFHYVRKGFQRIPHLLPTPRSLVCSSKKFLLLRYSNHLEVWKLGAFLKDKSGRPVAEPANVIIKNKINTENNHSDCEKVNEMLKISENPVKLLSLQTKGKKQIQSCAISPNGELIVYSTESHTRMLKLDSDDESNVYLSKVILNGSITTCSHFAFTEDSKVLIVYNAGTISFLQVDPEAGVTVTQTINTKKHLSCKSILHFQISKKCPSNKVYLVVADTQGDIVIWTQIGKKFEHYITLPKYHCVPSAMVVDAEKETLIVAYVDRKVVEYELFEKKFSDWPGSAMPPVWYDTKQCVLSVHPHPSGQSVVFQHLRDLFVLDRKAQFEMEPTKKKKSADAGEMNLGYHILPMKYLSDFYWLGKSEAVTVEILPENIMSMLPPVAIRNKRSVN

Uniprot

A0A194PVC3   A0A194QNU7   A0A3S2TJC3   A0A212F414   A0A2H1VUR3   A0A0L7LRF9   + More
A0A0L7QSZ1   A0A195ETJ6   A0A195E4R4   A0A087ZVR3   A0A2A3EAT3   A0A195B3E8   A0A154PCH4   A0A158NF52   A0A151X1K9   A0A310SGG4   A0A067R9R6   E2B6P4   F4W461   A0A2J7RKP9   A0A195CKH0   A0A026WQB7   A0A1I8M4P7   A0A1B6KAH5   A0A1B6CBI0   E9I9V9   A0A1I8PX43   A0A0A1WQI8   D6WEU4   A0A0M9A681   A0A232EKW7   K7J8T2   A0A0K8UQJ2   A0A1B0A717   A0A1A9V5V2   A0A0C9R341   A0A1Y1MM41   W8BSL2   A0A1B0C6R5   A0A1A9YSQ0   A0A182H8I2   A0A1B0G7C6   A0A0P5FVN2   A0A0P5FTQ6   A0A0P5QGW5   A0A0P5S465   A0A0N8BXE9   A0A0P5T982   A0A0P6DZF3   A0A0P4YLU4   A0A0P5SQR6   A0A0P5B794   A0A0P6FX96   A0A0P5YX22   A0A3L8D7N8   A0A0P5XW76   A0A0P5MW08   A0A182TXF9   A0A0P6C1G3   A0A0P6G6G2   A0A0N8E7I9   A0A0P5WT30   A0A0P6GCZ0   A0A0P6E1L6   A0A0P5VIU7   A0A0N8A326   A0A0P4YMC1   A0A0N8CRN3   Q7Q612   A0A0P5P412   A0A0P5U3G8   A0A0P5FSS3   A0A0P6CI28   A0A0P5QB95   A0A0P4Z4W2   A0A0P5SHL5   A0A2J7RKQ4   A0A0P5U446   A0A182XP43   A0A0N8B4W5   Q175U0   A0A0P6HSP2   A0A0N8A2S1   A0A182RGV2   A0A182I1I2   A0A0P4XLU1   B3M947   A0A0P5KT41   A0A182WHT2   A0A0P5GKK0   A0A182NMF3   A0A0P5J0F0   E9G0Z1   A0A182QTF7   A0A1Q3F5Y3   B0WXF0   A0A182ULZ9  

Pubmed

26354079    22118469    26227816    21347285    24845553    20798317    + More
21719571    24508170    25315136    21282665    25830018    18362917    19820115    28648823    20075255    28004739    24495485    26483478    30249741    12364791    14747013    17210077    17510324    17994087    21292972   

EMBL

KQ459590    KPI97346.1    KQ461190    KPJ07198.1    RSAL01000097    RVE47670.1    + More
AGBW02010462    OWR48474.1    ODYU01004527    SOQ44506.1    JTDY01000254    KOB78040.1    KQ414755    KOC61740.1    KQ981979    KYN31481.1    KQ979609    KYN20153.1    KZ288304    PBC28800.1    KQ976625    KYM79018.1    KQ434870    KZC09523.1    ADTU01001502    KQ982585    KYQ54287.1    KQ760208    OAD61377.1    KK852609    KDR20318.1    GL446000    EFN88628.1    GL887491    EGI71057.1    NEVH01002711    PNF41416.1    KQ977642    KYN00952.1    KK107131    EZA58210.1    GEBQ01031531    JAT08446.1    GEDC01026502    GEDC01007355    JAS10796.1    JAS29943.1    GL761846    EFZ22657.1    GBXI01013594    JAD00698.1    KQ971318    EFA00439.1    KQ435727    KOX78080.1    NNAY01003720    OXU18958.1    GDHF01023345    JAI28969.1    GBYB01001225    GBYB01001226    JAG70992.1    JAG70993.1    GEZM01027404    JAV86753.1    GAMC01006657    JAB99898.1    JXJN01026869    JXUM01029015    KQ560839    KXJ80661.1    CCAG010006832    CCAG010006833    GDIQ01253234    JAJ98490.1    GDIQ01251994    JAJ99730.1    GDIQ01135468    JAL16258.1    GDIQ01093281    JAL58445.1    GDIQ01135467    JAL16259.1    GDIP01133437    JAL70277.1    GDIQ01070739    JAN23998.1    GDIP01225471    JAI97930.1    GDIP01141739    GDIP01105585    GDIP01105582    LRGB01001581    JAL61975.1    KZS11276.1    GDIP01192924    JAJ30478.1    GDIQ01052415    JAN42322.1    GDIP01065398    JAM38317.1    QOIP01000012    RLU16266.1    GDIP01066842    JAM36873.1    GDIQ01154620    JAK97105.1    GDIP01022564    JAM81151.1    GDIQ01039306    JAN55431.1    GDIQ01054156    JAN40581.1    GDIP01081834    JAM21881.1    GDIQ01035026    JAN59711.1    GDIQ01069109    JAN25628.1    GDIP01114340    JAL89374.1    GDIP01187329    JAJ36073.1    GDIP01225470    JAI97931.1    GDIP01111829    GDIP01105583    JAL98131.1    AAAB01008960    EAA11688.4    GDIQ01135466    JAL16260.1    GDIP01118387    JAL85327.1    GDIQ01250542    JAK01183.1    GDIQ01090880    JAN03857.1    GDIQ01138128    JAL13598.1    GDIP01218525    JAJ04877.1    GDIQ01093280    JAL58446.1    PNF41417.1    GDIP01118386    JAL85328.1    GDIQ01212539    JAK39186.1    CH477395    EAT41865.1    GDIQ01014744    JAN79993.1    GDIP01188169    JAJ35233.1    APCN01000061    GDIP01241127    JAI82274.1    CH902618    EDV40031.1    GDIQ01205456    JAK46269.1    GDIQ01246576    JAK05149.1    GDIQ01208154    JAK43571.1    GL732528    EFX86991.1    AXCN02000928    GFDL01012075    JAV22970.1    DS232163    EDS36480.1   

Proteomes

UP000053268    UP000053240    UP000283053    UP000007151    UP000037510    UP000053825    + More
UP000078541    UP000078492    UP000005203    UP000242457    UP000078540    UP000076502    UP000005205    UP000075809    UP000027135    UP000008237    UP000007755    UP000235965    UP000078542    UP000053097    UP000095301    UP000095300    UP000007266    UP000053105    UP000215335    UP000002358    UP000092445    UP000078200    UP000092460    UP000092443    UP000069940    UP000249989    UP000092444    UP000076858    UP000279307    UP000075902    UP000007062    UP000076407    UP000008820    UP000075900    UP000075840    UP000007801    UP000075920    UP000075884    UP000000305    UP000075886    UP000002320    UP000075903   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40
PF06398   Pex24p
PF01984   dsDNA_bind
PF10177   DUF2371
PF00337   Gal-bind_lectin
PF06462   Hyd_WA

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
IPR024977   Apc4_WD40_dom       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011044   Quino_amine_DH_bsu       
IPR011048   Haem_d1_sf       
IPR036883   PDCD5-like_sf       
IPR006624   Beta-propeller_rpt_TECPR       
IPR013320   ConA-like_dom_sf       
IPR002836   PDCD5-like       
IPR006614   Peroxin/Ferlin       
IPR018787   DUF2371_TMEM200       
IPR001079   Galectin_CRD       
IPR010482   Peroxin       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF51004   SSF51004       
SSF49899   SSF49899       
SSF46950   SSF46950       

Gene 3D

2.130.10.10     1.10.8.140    

CDD

cd00070  GLECT

ProteinModelPortal

A0A194PVC3   A0A194QNU7   A0A3S2TJC3   A0A212F414   A0A2H1VUR3   A0A0L7LRF9   + More
A0A0L7QSZ1   A0A195ETJ6   A0A195E4R4   A0A087ZVR3   A0A2A3EAT3   A0A195B3E8   A0A154PCH4   A0A158NF52   A0A151X1K9   A0A310SGG4   A0A067R9R6   E2B6P4   F4W461   A0A2J7RKP9   A0A195CKH0   A0A026WQB7   A0A1I8M4P7   A0A1B6KAH5   A0A1B6CBI0   E9I9V9   A0A1I8PX43   A0A0A1WQI8   D6WEU4   A0A0M9A681   A0A232EKW7   K7J8T2   A0A0K8UQJ2   A0A1B0A717   A0A1A9V5V2   A0A0C9R341   A0A1Y1MM41   W8BSL2   A0A1B0C6R5   A0A1A9YSQ0   A0A182H8I2   A0A1B0G7C6   A0A0P5FVN2   A0A0P5FTQ6   A0A0P5QGW5   A0A0P5S465   A0A0N8BXE9   A0A0P5T982   A0A0P6DZF3   A0A0P4YLU4   A0A0P5SQR6   A0A0P5B794   A0A0P6FX96   A0A0P5YX22   A0A3L8D7N8   A0A0P5XW76   A0A0P5MW08   A0A182TXF9   A0A0P6C1G3   A0A0P6G6G2   A0A0N8E7I9   A0A0P5WT30   A0A0P6GCZ0   A0A0P6E1L6   A0A0P5VIU7   A0A0N8A326   A0A0P4YMC1   A0A0N8CRN3   Q7Q612   A0A0P5P412   A0A0P5U3G8   A0A0P5FSS3   A0A0P6CI28   A0A0P5QB95   A0A0P4Z4W2   A0A0P5SHL5   A0A2J7RKQ4   A0A0P5U446   A0A182XP43   A0A0N8B4W5   Q175U0   A0A0P6HSP2   A0A0N8A2S1   A0A182RGV2   A0A182I1I2   A0A0P4XLU1   B3M947   A0A0P5KT41   A0A182WHT2   A0A0P5GKK0   A0A182NMF3   A0A0P5J0F0   E9G0Z1   A0A182QTF7   A0A1Q3F5Y3   B0WXF0   A0A182ULZ9  

PDB

5N1A     E-value=8.91596e-35,     Score=370

KEGG

101742367    K14548 U3 small nucleolar RNA-associated protein 4 | (RefSeq) cirhin

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0030686   GO:0000462   GO:0034455   GO:0032040   GO:0016021   GO:0030246   GO:0003677   GO:0005515   GO:0005524   GO:0016787   GO:0004003   GO:0006289   GO:0006367   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

Length:

692

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03121

Exp number, first 60 AAs:

0.00326

Total prob of N-in:

0.00268

outside

1  -  692

 

 

Pi

222.461954

Theta

150.61613

Tajima's D

-1.197855

CLR

154.949307

CSRT

0.105194740262987

Interpretation

Uncertain