SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06605
Pre Gene Modal
BGIBMGA011796
Annotation
PREDICTED:_wiskott-Aldrich_syndrome_protein_family_member_2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.031
 

Sequence

CDS
ATGCTCTCGGTACAAGCGCCGGGGTGCGCGGGCATGGAGCGGCTGGGCGCGCCGGGGGGGCCGCGCCTGCGGCACGATCACAGACACCATCATTCCACACTGGAATGGGAAAAACAGCAAAAATTGCAAGCCATGGTGGGGCGGTTACAAGAGATGGTGGAGCAAGAGACGCGCGCGAGATCCGCAGCCGCTGCCGAGAGGCTCGGTCTACCGCCTAGCATACAGCTGCCCGATGGCGAGTACGGCCAGGATGCGCATCTACAGCTCCGAGTCGCTTATCAGCAAGCCGAGCTGACAAGGAGCAGCTTCCAGCCTCCACCGAATAAATGCGTGAGCGACGTGCCCGAGTGGGCGGGTGCAGCAGAAGCTGTAGGCGCGCGGCGCGGTGGCAAGAAAGACGGTCTGCTGCAGAAAGCGACGCGATGGTGGGTGCGTATGGGCGCACGCGGCTCGCCGACCCTGCTGCCGAGCGCACCGCCCCGTGGCACACCGCCCCGCCCTGCGCCGCGCACGCCACCACGCGCTCCGCCCCGCGCGCCGCCCGTGGTCATGGTGCCCCGCCGCGCTGCGCCGCCCGCTCCGCCCGACGCGTGA
Protein
MLSVQAPGCAGMERLGAPGGPRLRHDHRHHHSTLEWEKQQKLQAMVGRLQEMVEQETRARSAAAAERLGLPPSIQLPDGEYGQDAHLQLRVAYQQAELTRSSFQPPPNKCVSDVPEWAGAAEAVGARRGGKKDGLLQKATRWWVRMGARGSPTLLPSAPPRGTPPRPAPRTPPRAPPRAPPVVMVPRRAAPPAPPDA

Summary

Pfam
PF13625   Helicase_C_3        + More
PF16203   ERCC3_RAD25_C
PF04851   ResIII
Interpro
IPR014001   Helicase_ATP-bd        + More
IPR032830   XPB/Ssl2_N       
IPR001650   Helicase_C       
IPR032438   ERCC3_RAD25_C       
IPR001161   XPB/Ssl2       
IPR006935   Helicase/UvrB_N       
IPR027417   P-loop_NTPase       
SUPFAM
SSF52540   SSF52540       

Ontologies

Topology

Length:
197
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03827
outside
1  -  197
 
 

Population Genetic Test Statistics

Pi
163.59464
Theta
178.583573
Tajima's D
-0.579555
CLR
0.495506
CSRT
0.227338633068347
Interpretation
Uncertain
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