SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06601  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011676
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.255
 

Sequence

CDS
ATGAAACTGTTTATGTCCGAAGACAACCTTTGTTCTCAAAACCTTCTCAAATTAATTTCTCATGGCAATGCTATAATTGCGGAAATACTTAGACTCAAAGACCATAATCCAAAAGTTTACTTATTGGAAAGTAGAGAAATACAACAAAAGTACCAAGATGTGATATTGGATTTCAGTTATTTTAGAATATCTGATGCCCATGAAGCTAAGATTAATGTGAATTCTAAACTGCAAGATTTAGATGATGATTTAAAGGAAAACTATCTGGAAATAATTACACGTTTTTATTTTCTATTTGAAAACATATATCAATATATTATTGATCTGAATGTATTCATAGATCAATTGCAAGATGAAGCGTTCATCCAACAAAACATGGAAACTGTTATCAAAGACATTGAAGGAAAACAACTATTGTGTGAATCATTATATTTGTATGGGGCCATGCTTTTATTATGTGACCTGTTTATTCCTGGCCCAATGAGAGAGAGACTTCTTGTGGCATTTTATCGCTACAGCACAAGTCAATCTCAGTCTAATATTGATGATGTTTGCAAGTTGTTAAGAGATACTGGTTATGATCAACAGAACGCAAAAAGACCTGCAGAATATCCTGTCGAGTATTTTAGCCGAGTTAATATTAGACATGACTTCATAGAGAAAGTTTTGGGCAAGCTAAGATCTGATGACATTTACAATCAGCTGGCAGTTTATACCCTATCTGAACATCAAGCTCCCGCTCTCGCTTCACAAGCCAGCATGCTTTTTATATGCTATGAACCATTAAAATTATTGGAGCTTTTAATAAGCACTGCAGAACTAGAACTGAAAGTCAGAGAAAGCTTAAATAAATTACTTGAAAATAAAAATGAAGCGTGGAATTCAAACAAAACTCAAGCAGTTGAAGCTCTGAGTAGCCTTTCCGAATTATTCTCCGGAGTAAAATCCTTAACAAAAATACCTCAAAATGATCAACTTAAACTTTGGTTCGAAAATATTTCTAAGCAGGTTGCTTCTCTTGGGGAGCCGATCACAACAAAATCGATTAAAAAAGTTACCCAACTTCTACAGGCATTAGATGAAGTCGAGGAATTTCATGGCATTAAAAGTACTTCCACAATCGTTCAATTTTTAACAGACAGTAAAGATGCACTCAAGAATTTATTGCGGACAGCTTCTCTAAAGGAGGATTATTTGGTGACTTTAGAAACAGTTGCCGATGTCAGTTACGCATGGTGTACAATAGACCTTTATACAAAATTCATGCAAGACAGCATCAAAGCGAATCCAACAGTGACAAGTAGATTAAGAGCGCTGTTCCTTAAACTGGCAAGTGCTATGGAAATTCCATTGCTACGAATCAATCAGTCTCACAGCGAAGATCTTGTATCTGTCTCCCAATATTACAGTAACGAACTAATTAAGTACATACAAAAAGTATTACAAGTCATTCCGGAAATGGTTTTTTCAATAGTAAAAAAAATTATAGATTTGCAAACTTGGACTATAAAAGAAGTTCCTACGAAATTAGACAAAGAGAAATTGAGAGAGTTTGCACAATTGGAACATAGGATGGAGGTAGCGAAATTAACACATACCGCATCAACATTTACAACTGGGATTTTGGATATGAGGTCTACTTTAGTGGGTGTTATACGAGTAGATCCAGCAGAATTATTAGAAGAAGGATTGCTAAAGGAGCTAGACCGACATATTAGTAGTAAATTTGAAGAGTTCTTAGAGCCTCAAGGAAAAAAACTACAACTTACAGCGATTAACCTATTAACTCGATTACAAAAACTCGCCGAAAGTATGGATGGATACAAAAGATCCTTAGAATACATTCAAGATTATATAAACATTCATGGGTTACGAATATGGCAAAAACAGGTCTCTGCCATTATAAACGAGAACGTTTCAAAGGAAATAAGCCTTCGAAAAGGAGTAGCATTATATAGTCCATCGGCAGGTTTCATGGGAAGTTTGGCTAGACAAATAGTACAGCTAACAGACGCACGAGTATCTATTTACGTAAGCGTGTGCGCAGCGTGGTTTGATGGGAAGACTCAAACCGAAACTGTCAATACTAAGACATTTGCCAAATTAAATGAAGCAATCGGTGTTGTAGGCCTTCACGGCTTAGATACGTTGTACGGTTTCATGATTAAAAATCAACTGCAGAACGTTCAAGGGATAATCAAAAGTAATCATGAAAAGATCACTGTCTTGAGCAGTAGTTATGATGCCAAAGAAATGGAACAAATAATGAATAAAGGGACGAAAGCCATTCAACAGCTGTCCGATGTAATTGTACTTATCGGTACCTTACAAATTTTGAGGAAACAGATTCTTTACCAATTGAACACGAGTTGTAAATTTGATTCAGCGCACCTAGAGTCGTCATTGAGGACCTTAAACGAATCGCTGTTAAACGAATTGAAAGCTACAGCAAGCTTAGCTTCGAAACCAAAGCTGTCAACAAAACTACTTCAACACTTAGAAGAACATTTAGTACGAAGTGGAATTTCAGAACCATTCGACAAAATATACGTCAGAACTGGCAAAGAGTTTCTGATTCCAGATCTAGGAAAGATCACAGCTTTACTTCTTATAGCCAACTTACCAAAGCTCCAGCTGTGTCAAACAACAGGTGACCTAATAATGCGCAAATCGGGAGAAAATATAGACGGGTATCCATTGTTGGTGGGTATATACACAGTTCTGCGCCAATCAAAAACTAGCAACTTAAATTTGTTCATTGATTTTCTTTGCAGTTATGCAAGATCAAAGCGCACCGAATCGTCTAACGAGGGTCAACCCAATGTAGTTCGAGTTTTAGAACTATTCTGTGAAACTTTCAATTATCCTTTTGAAAAAATGGAAAATAAACTACCGTTAATGCTTTTTACACGCACGTCCACAAAATAG
Protein
MKLFMSEDNLCSQNLLKLISHGNAIIAEILRLKDHNPKVYLLESREIQQKYQDVILDFSYFRISDAHEAKINVNSKLQDLDDDLKENYLEIITRFYFLFENIYQYIIDLNVFIDQLQDEAFIQQNMETVIKDIEGKQLLCESLYLYGAMLLLCDLFIPGPMRERLLVAFYRYSTSQSQSNIDDVCKLLRDTGYDQQNAKRPAEYPVEYFSRVNIRHDFIEKVLGKLRSDDIYNQLAVYTLSEHQAPALASQASMLFICYEPLKLLELLISTAELELKVRESLNKLLENKNEAWNSNKTQAVEALSSLSELFSGVKSLTKIPQNDQLKLWFENISKQVASLGEPITTKSIKKVTQLLQALDEVEEFHGIKSTSTIVQFLTDSKDALKNLLRTASLKEDYLVTLETVADVSYAWCTIDLYTKFMQDSIKANPTVTSRLRALFLKLASAMEIPLLRINQSHSEDLVSVSQYYSNELIKYIQKVLQVIPEMVFSIVKKIIDLQTWTIKEVPTKLDKEKLREFAQLEHRMEVAKLTHTASTFTTGILDMRSTLVGVIRVDPAELLEEGLLKELDRHISSKFEEFLEPQGKKLQLTAINLLTRLQKLAESMDGYKRSLEYIQDYINIHGLRIWQKQVSAIINENVSKEISLRKGVALYSPSAGFMGSLARQIVQLTDARVSIYVSVCAAWFDGKTQTETVNTKTFAKLNEAIGVVGLHGLDTLYGFMIKNQLQNVQGIIKSNHEKITVLSSSYDAKEMEQIMNKGTKAIQQLSDVIVLIGTLQILRKQILYQLNTSCKFDSAHLESSLRTLNESLLNELKATASLASKPKLSTKLLQHLEEHLVRSGISEPFDKIYVRTGKEFLIPDLGKITALLLIANLPKLQLCQTTGDLIMRKSGENIDGYPLLVGIYTVLRQSKTSNLNLFIDFLCSYARSKRTESSNEGQPNVVRVLELFCETFNYPFEKMENKLPLMLFTRTSTK

Summary

EMBL
BABH01012048    BABH01012049    NWSH01000902    PCG73617.1    ODYU01006850    SOQ49065.1    + More
KQ459590    KPI97336.1    KQ461190    KPJ07210.1    JTDY01002062    KOB72205.1    AGBW02010462    OWR48465.1    AJVK01022067    AJVK01022068    KQ980304    KYN16807.1    NEVH01027114    PNF13650.1    PNF13651.1    PNF13649.1    KQ977728    KYN00267.1    PYGN01000254    PSN50014.1    PNF13648.1    KK853292    KDR08839.1    MRZV01000412    PIK50593.1    AJWK01021993    LSMT01000147    PFX25591.1    RQTK01000514    RUS78371.1    KK112859    KFM58709.1    GG666480    EEN65714.1    GFAA01003163    JAU00272.1    GECZ01000434    JAS69335.1    GBBM01003545    JAC31873.1    GEFH01003120    JAP65461.1    RCHS01001430    RMX53472.1    GACK01001001    JAA64033.1    GECU01032223    JAS75483.1    GEDV01010230    JAP78327.1    GFPF01005448    MAA16594.1    GGLE01001523    MBY05649.1    KB199650    ESP05218.1    GFPF01005449    MAA16595.1    GEFM01004484    GEGO01002082    JAP71312.1    JAR93322.1    GEBQ01010187    JAT29790.1    GFJQ02004689    JAW02281.1    GBYX01454375    JAO27142.1    GEDC01007389    JAS29909.1    NEDP02004241    OWF46187.1    GEBQ01000399    JAT39578.1    HAEH01017146    SBS05660.1    GBYX01454367    JAO27150.1    DS235848    EEB18551.1    HAEF01016068    SBR57227.1    GBYX01454374    JAO27143.1    KK516376    KFP64883.1    HADZ01010886    SBP74827.1    KL257223    KFZ57953.1    NHOQ01000034    PWA33609.1    HAEH01022525    SBS14107.1    GCES01052499    JAR33824.1    GCES01052500    JAR33823.1    KE346367    KJE94402.1    AKHW03000629    KYO45166.1    GCES01052501    JAR33822.1    GCES01052498    JAR33825.1    GCES01011702    JAR74621.1    HAEF01000932    HAEG01007090    SBR38314.1    AHAT01004695    DS232000    EDS31151.1    HAEH01006800    HAEI01004799    SBR90389.1    HAEB01021312    HAEC01003532    SBQ71609.1    AGCU01090999    AGCU01091000    HAED01000096    HAEE01007095    SBQ85941.1    AMQN01005481    KB296106    ELU12274.1    HADW01004753    HADX01007767    SBP06153.1    HADY01014328    SBP52813.1    AYCK01000076    HAEJ01005969    SBS46426.1    HADZ01017523    HAEA01001969    SBP81464.1    JXUM01042891    KQ561342    KXJ78902.1    KJE94401.1    JU176015    AFJ51539.1   
Pfam
PF10266   Strumpellin
Interpro
IPR019393   WASH_strumpellin        + More
IPR036716   Pest_crys_N_sf       
SUPFAM
SSF56849   SSF56849       

Ontologies

Topology

Length:
975
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.08538
Exp number, first 60 AAs:
0.00469
Total prob of N-in:
0.04621
outside
1  -  975
 
 

Population Genetic Test Statistics

Pi
184.822205
Theta
200.646882
Tajima's D
-0.893886
CLR
0.245839
CSRT
0.154842257887106
Interpretation
Uncertain
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