Gene

KWMTBOMO06597  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011675

Annotation

Nuclear_pore_complex_protein_Nup160-like_[Papilio_xuthus]

Location

Bomo_Chr11(+):11303872-11315586      View in EpiBrowser

Full name

Nuclear pore complex protein Nup160 homolog      

Alternative Name

Nuclear pore protein 160

Location in the cell

PlasmaMembrane   Reliability : 2.065

CDS

ATGGAATTTCTTGAAGCTATGCCGGTCACGTTCAAGGAGATTGCTCCAAATCATAATATTCCAGAGAAATGGAAAGAAATTGTACTTAACACAGGTGGTACTCACAGTACTTTACAAGACATCAAATTACCGCAAAAAGCCGGCGGTTACTGGTATAAGGATTCAACGAAGTTCTACACCAGGAATCGCTTTATTTACTGGCAAACTACATCAGATGCAATTGAGATATCGGAAGCTTCACTAGATTTAAATCTCTCTTCTGCAAACTTGAGATGTAAAGTAGCTCCAGGAACTCCTCCACTGAGTAATATTACTGTTTATGAACGCAGTAGTACAAACAATGTTGTTATATTAGCTGCTACAGTTTCGTCAGTACATAGACTAGTTTTTCCACATCCTTCAATATTAGATAAAAAGTGTACATATGGATCAATGAGCAGTACATCACCTTCTATATGTCATGATACATCTTCTATAAACAACCCTAATAATTATTTTATTTTAAATCAGTATTCTAATGCCACCACTGGAGTAGCCCATACATGTTCTTCACTGCTTCGTGAAAATGGTGAAGCTATATTTGCACTTGCATTTGGACATGAAGGTGAGGGCAGTTTGTTACTTATAAAACTGCCAGTAACTGGAGCAGCAGTCACTACTGTATTAAAGAGAGAATCAACTGTACCCAGTTTCTTATCAGGAATTACAGGAGCTCTCAGAGGCAAGACTACTGATGGAGTTGAAACTTATGGTGTGGTAATTACAAAAAATGTAATTGTGGCTGTGTGTGGTGATGCGTGTCTTAGAGCATGGCCCATTGATGATGGAGGTGCACCAATTTCTGTGTCTGCCCCACTTTCACAAACAAACGTGAGACCGAAGCCACCACCACATGGTCACATGCTACAGAAAACAATTGGATTGGATGGCAGTGTCATTTTAGTTGCATATTTATCTTTTCCAAATGAATGTGAATTTGTTGTGATGAAGATGCATGATCCCGTAGGGGGATTTATAAAGTTTTCACATATCTGCCGAATATTTGGTCCTCAGTTGGATCTTTTAGATTATAAAATTGGTTATGGAGACAGCAATCATGTCATTTGGGCACTGTGGAGTCAACCCGATGGCGATACCATGATGACATGTAGTTCCCTGGGCGCCGAAGTGTCCTGGCAGGCAGTAGCGGGCCGCGAGCCTCCCCCGCCCTTGCCGCAACTATCAAATCACAACCAGTACCGCGATAGACTCCTTGCGCCGGGCCTATTTCCACATTCGGTCATCAGAAAAGCTCTGGTGATCTATGCGCGCACGTGGTGCGGCGGGGGCGCGGGGGGCGCGGCGGAGGAGGAGCTGGGCGAGGCGGCGGTGTCCGCCGTGCTGGCCCGCCTCCGCCTGCATGCGGCGCGCACCGCCTCCACAGATCAAACACATCTTATGCACAAATGCTGGTCAGATTTGTACAGCTGGTGCATGCAGTATATGGAAGGGTTACAGAAACCTCTTGGATTGATGGTGTCAGAAAATGGCACGGACATAGAGAGCGGAGGGTGGTGTGCAGTTGTGCGCCGCGCGGGGGTGTCTCTAGTCTGTGAACTCGAACCGCTAGAACGCATGATGTTGTCACCTGAAGATACACTGGAATCTGGAACTGGCGTGTGGCTGGGCGCGCTGTCGGCGGCGGCGCGGCGCGTGGTGGCGGCGGGCGCGTGCTGGGAGCGGGCCGCCTCGCCGAGCCGCGCGCACCAGCTCGAGCGACAACTGTTCGCAGCCGCCGCGCCGCAACACCGCCTGCTTCCTAGACTGCTGCATCTGCTGCACTCGCCGCCTATCTTAACACCCCAGCAAATCAATGAACTTAGTGCAATTTTGGAGCCGATCAGAGATCTCCAAAGTGCCGTACTGGAACTGAACGATGCCCTCAGATTGGATGTTCCAGACATCGAAATGTCTAGAAGTGAAGATGATGAAGACGGTGAATATGAAAGTTTATTTGCCAGCGATCTCGGAGTAGCCGTGGTCACCGAGGCCATTAGGCAAATGGCTGAAATGAGATGCCGCGTGGTGCGAGGCGCGCTGGCGGCGCTGGGCGTGTGTCGCGGGGCGGGCGCGGTTCCGGGCGCCGGACACTGCGCCGTGCACTGGCAGGCCTACCGCGCGCTTCTATGGCTGCACGGCGCGCCGCCACATGCCGCCACGAATTCGAATTCGTCGGAAGCGTTCCGGTTGAAGCTGAGTGCGCTAGGCGGCGCGGCAGTGAGTGCGGGCGCGGGCGGCGCGGGCGTGGTGCGGGTATACGCGCGGGGGCCGGGGGGCGCCCGGGCGCGCGCGCACCTGGCCGCCGCACGGACGCACACCGCCTGGCAACACGCGCTGCCGCACTTCCTCTACCATCTCGCGCATCAACTTTGGGCAGTTAGCGGCGGCTTCGATTTTGGTTGGTGGTTAGCAAGAATCAACCAGCCACGACTCGTGCAGACCTACGTCAATATGCTGGAGCCCTGGTGTGAATGGAATGCGTGCTCGCGTCAGTTTATATTGGGGTTGGCCCTGCTAGACCTGGAAGACACGGAGGCGGCGTACACGGCGTTCTGCAAGGCAGCCAAAGGTGTTAGCACGGAGCCTTTCCTGCGACACCTCGTGGCCGAGCCGGACGCGCACCTCACTCAGCACCGAGCCCTCGTGCTGTACTACATGAAGGTTATAAAATTGTTCGAGATTCACGACGAAGGCGCTTGCGTTGTGCGTCTCGCGGAAACCGCCATTAGCATCGCTGACAAAGATGATCCCAATTTGTCGATGTTCCAGTGGGTGGTGTTCAAATGGCACCTGTCGGGCGGGCGCACGTCCCGCGCGCTGACCGCCGCCGCCGCCAACCCGGCGCCGCACGCCCGCGCCGCCGCTGCGGCCGCCCTGCTCACTACGCTCGGTATATATACAATCTACCAATAG

Protein

MEFLEAMPVTFKEIAPNHNIPEKWKEIVLNTGGTHSTLQDIKLPQKAGGYWYKDSTKFYTRNRFIYWQTTSDAIEISEASLDLNLSSANLRCKVAPGTPPLSNITVYERSSTNNVVILAATVSSVHRLVFPHPSILDKKCTYGSMSSTSPSICHDTSSINNPNNYFILNQYSNATTGVAHTCSSLLRENGEAIFALAFGHEGEGSLLLIKLPVTGAAVTTVLKRESTVPSFLSGITGALRGKTTDGVETYGVVITKNVIVAVCGDACLRAWPIDDGGAPISVSAPLSQTNVRPKPPPHGHMLQKTIGLDGSVILVAYLSFPNECEFVVMKMHDPVGGFIKFSHICRIFGPQLDLLDYKIGYGDSNHVIWALWSQPDGDTMMTCSSLGAEVSWQAVAGREPPPPLPQLSNHNQYRDRLLAPGLFPHSVIRKALVIYARTWCGGGAGGAAEEELGEAAVSAVLARLRLHAARTASTDQTHLMHKCWSDLYSWCMQYMEGLQKPLGLMVSENGTDIESGGWCAVVRRAGVSLVCELEPLERMMLSPEDTLESGTGVWLGALSAAARRVVAAGACWERAASPSRAHQLERQLFAAAAPQHRLLPRLLHLLHSPPILTPQQINELSAILEPIRDLQSAVLELNDALRLDVPDIEMSRSEDDEDGEYESLFASDLGVAVVTEAIRQMAEMRCRVVRGALAALGVCRGAGAVPGAGHCAVHWQAYRALLWLHGAPPHAATNSNSSEAFRLKLSALGGAAVSAGAGGAGVVRVYARGPGGARARAHLAAARTHTAWQHALPHFLYHLAHQLWAVSGGFDFGWWLARINQPRLVQTYVNMLEPWCEWNACSRQFILGLALLDLEDTEAAYTAFCKAAKGVSTEPFLRHLVAEPDAHLTQHRALVLYYMKVIKLFEIHDEGACVVRLAETAISIADKDDPNLSMFQWVVFKWHLSGGRTSRALTAAAANPAPHARAAAAAALLTTLGIYTIYQ

Description

Involved in poly(A)+ RNA transport (By similarity). Required for nuclear import of Mad (PubMed:20547758). May play a role in double strand break DNA repair (PubMed:26502056).

Subunit

Interacts with Nup98, members of the Nup107 subcomplex in the nuclear pore.

Keywords

Complete proteome   DNA damage   mRNA transport   Nuclear pore complex   Nucleus   Polymorphism   Protein transport   Reference proteome   Translocation   Transport  

Feature

chain  Nuclear pore complex protein Nup160 homolog

Uniprot

S4PE43   A0A194PX43   A0A194QNW1   A0A2H1W1Q6   A0A212F427   A0A067RSR0   + More
A0A2J7PQA4   A0A2J7PQB2   A0A0C9R7L3   A0A0C9QTL0   A0A0N0BCJ2   A0A087ZSU1   A0A2J7PQB1   A0A2P8Z5R9   E2B6Z5   A0A2A3E3A2   A0A1B0DPT4   D6X0C2   A0A1B0CGF9   A0A0L7RA15   A0A1I8PEF6   A0A1I8M5I5   A0A1A9W7W3   A0A1A9UV70   A0A158NN65   A0A195BB07   A0A1B0G1N8   A0A1A9ZLZ1   A0A195C422   A0A1B0B1N7   A0A1A9XHL8   A0A336LZC2   A0A336M2C2   A0A232FB08   A0A151X2K7   A0A195FAF0   A0A0H3XWL9   A0A0H3XSX0   A0A0H3XX57   A0A0H3XWM4   A0A0H3XX51   A0A0H3XTX4   A0A0H3XWE5   A0A0H3XWE1   C0KG82   A0A0H3XWF0   C0KG80   C0KG79   C0KG88   C0KG78   A0A0H3XTY4   B4P176   A0A0H3XWF5   C0KG87   C0KG86   C0KG77   C0KG81   C0KG84   X2J9F3   Q9VKJ3   B4HX22   A0A0H3XTX9   A0A1Y1M1R8   F4W8C9   A0A182GWQ8   A0A1S4F1D8   B0WAM0   A0A1Q3EZU2   B3N4K7  

Pubmed

23622113    26354079    22118469    24845553    29403074    20798317    + More
18362917    19820115    25315136    21347285    28648823    26022241    19197064    22936249    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    20547758    26502056    28004739    21719571    26483478    17510324   

EMBL

GAIX01003336    JAA89224.1    KQ459590    KPI97334.1    KQ461190    KPJ07213.1    + More
ODYU01005769    SOQ46967.1    AGBW02010462    OWR48463.1    KK852442    KDR23845.1    NEVH01022640    PNF18519.1    PNF18520.1    GBYB01004015    JAG73782.1    GBYB01004012    JAG73779.1    KQ435903    KOX69061.1    PNF18521.1    PYGN01000183    PSN51838.1    GL446071    EFN88537.1    KZ288446    PBC25619.1    AJVK01008241    AJVK01008242    KQ971372    EFA09598.2    AJWK01011081    KQ414619    KOC67705.1    ADTU01021054    KQ976537    KYM81417.1    CCAG010010949    KQ978344    KYM94923.1    JXJN01007216    UFQT01000316    SSX23160.1    SSX23159.1    NNAY01000491    OXU28021.1    KQ982579    KYQ54547.1    KQ981693    KYN37600.1    KR817629    AKM95868.1    KR817636    AKM95875.1    KR817635    AKM95874.1    KR817634    AKM95873.1    KR817630    KR817631    AKM95869.1    AKM95870.1    KR817628    AKM95867.1    KR817627    AKM95866.1    KR817621    KR817622    KR817623    KR817624    KR817625    KR817626    AKM95860.1    AKM95861.1    AKM95862.1    AKM95863.1    AKM95864.1    AKM95865.1    FJ600395    ACM79354.1    KR817632    AKM95871.1    FJ600393    FJ600396    CM002910    ACM79352.1    ACM79355.1    KMY89705.1    FJ600392    ACM79351.1    FJ600401    ACM79360.1    FJ600391    ACM79350.1    KR817638    AKM95877.1    CM000157    EDW88051.1    KR817637    AKM95876.1    FJ600400    ACM79359.1    FJ600399    ACM79358.1    FJ600390    ACM79349.1    FJ600394    ACM79353.1    FJ600397    FJ600398    ACM79356.1    ACM79357.1    AE014134    AHN54346.1    FJ600378    FJ600379    FJ600380    FJ600381    FJ600382    FJ600383    FJ600384    FJ600385    FJ600386    FJ600387    FJ600388    FJ600389    BT015261    CH480818    EDW52567.1    KR817633    AKM95872.1    GEZM01042736    GEZM01042735    JAV79669.1    GL887908    EGI69420.1    JXUM01093892    JXUM01093893    JXUM01093894    KQ564087    KXJ72815.1    DS231873    EDS41574.1    GFDL01014222    JAV20823.1    CH954177    EDV58919.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000027135    UP000235965    UP000053105    + More
UP000005203    UP000245037    UP000008237    UP000242457    UP000092462    UP000007266    UP000092461    UP000053825    UP000095300    UP000095301    UP000091820    UP000078200    UP000005205    UP000078540    UP000092444    UP000092445    UP000078542    UP000092460    UP000092443    UP000215335    UP000075809    UP000078541    UP000002282    UP000000803    UP000001292    UP000007755    UP000069940    UP000249989    UP000002320    UP000008711   

PRIDE

X2J9F3    Q9VKJ3   

Interpro

IPR021717   Nucleoporin_Nup160        + More
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF50978   SSF50978       

ProteinModelPortal

S4PE43   A0A194PX43   A0A194QNW1   A0A2H1W1Q6   A0A212F427   A0A067RSR0   + More
A0A2J7PQA4   A0A2J7PQB2   A0A0C9R7L3   A0A0C9QTL0   A0A0N0BCJ2   A0A087ZSU1   A0A2J7PQB1   A0A2P8Z5R9   E2B6Z5   A0A2A3E3A2   A0A1B0DPT4   D6X0C2   A0A1B0CGF9   A0A0L7RA15   A0A1I8PEF6   A0A1I8M5I5   A0A1A9W7W3   A0A1A9UV70   A0A158NN65   A0A195BB07   A0A1B0G1N8   A0A1A9ZLZ1   A0A195C422   A0A1B0B1N7   A0A1A9XHL8   A0A336LZC2   A0A336M2C2   A0A232FB08   A0A151X2K7   A0A195FAF0   A0A0H3XWL9   A0A0H3XSX0   A0A0H3XX57   A0A0H3XWM4   A0A0H3XX51   A0A0H3XTX4   A0A0H3XWE5   A0A0H3XWE1   C0KG82   A0A0H3XWF0   C0KG80   C0KG79   C0KG88   C0KG78   A0A0H3XTY4   B4P176   A0A0H3XWF5   C0KG87   C0KG86   C0KG77   C0KG81   C0KG84   X2J9F3   Q9VKJ3   B4HX22   A0A0H3XTX9   A0A1Y1M1R8   F4W8C9   A0A182GWQ8   A0A1S4F1D8   B0WAM0   A0A1Q3EZU2   B3N4K7  

PDB

5A9Q     E-value=1.85902e-28,     Score=317

KEGG

101746756    K12231 E3 ubiquitin-protein ligase HECTD1 [EC:2.3.2.26] | (RefSeq) E3 ubiquitin-protein ligase HECTD

GO

GO:0005643   GO:0017056   GO:0000724   GO:0006606   GO:0031080   GO:0006406  

PANTHER

PTHR21286  

Subcellular location

  

Length:

983

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.99294

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00054

outside

1  -  983

 

 

Pi

234.044576

Theta

182.116169

Tajima's D

1.009952

CLR

0.009629

CSRT

0.662916854157292

Interpretation

Uncertain