Silkworm Genome Informatics Database

Gene

KWMTBOMO06588 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011671

Annotation

PREDICTED:_probable_helicase_senataxin_[Bombyx_mori]

Location

Bomo_Chr11(+):11183742-11202157 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.924

CDS

ATGGCTATGTGGAAATTAATTCGGCATGCATTTGGAAACGAGGAATTCACGCTACGTGAAGGAAAAGAGGAAACTGTAGGCAGAGGTGTTGAAAATACTATAACTTTGTCTAGTATAGTTATATCACGACGACACTGTGTTATTAAAGTAGAAAAAAACCAAATCCTCATCACAGATCTAAAGAGTTCCAATGGTGTTTATGTTGGACAGAAGAAAATTCCACCAAATGAACCATTTCCTGTTAATAATCATGACATAATTGGCTTTGGATGGGCTGTTGGTGCACCACTTATGAGAATTAATAATACGGAGAAATATGTTTTCCAACTTCAAAAATTAAGTAATGGAATTCCTATTGCGGACCGAATACAATATGAAGAAGAATGCAATGGTTTTGATGAAGAAGTGGAAATTCCTAAAAACAATATTTTTAATAAAACACCTATAGCGCAGAAACGAAAAAATGAGGACAATTTATGTTTAGATGAATATGTTAAAGAGATTAAAAAAGAAAGAAATGATGAAATTATTTTATTATCTGACAGTGAAAATGAAATAAAAAAAGAAAGTTTTCCAGGCAACTCAAAACATGCAACATTAGAACCTATTGAAGAAGAAGTTCAAATTCAAAATAATATAAAGTTTGAAGCCTTCGATATTAAGCAGGAGTATATTGTAGAATATGATGATGTACCTATAGAAATAAATGATGACTCTGACAGTGAATTGAATCAATGGTACAGAAGATTATCTAAAAATTCACCTGTAAAATGCTTACCAAAATTTAAAACTGAAAGCAAACCTGAAGATGAAGAGCAGAATAATATATCATATAGCCAGCAAGATGACTATTACAATAATGATTTTTTTGAAGACGATAATAATGAAGACATATTTTCTAATGATATCATAATTATTTCTGAACCTTCAAATTCAAATAATGATTCTCTGTTAGTACAAAATGGCTCAGACGCTAAAATCAATGAATCAAAAAATGTCAACTTCGCAAATGATATTACCAATGAACAGCAATGTTTGGATAGTAAACAAGATGAAGTTGACACCATAGAACAACCTGAATACTTTAAACCAACGAAATCAGAAAAACCTACAAATATTTCATCAAACTTCCACAGTCAAGCAAGTCATAAAGCTAAGCTCATAGAACCTCAAATGCATGTAAAAAAAAATAAAGCTAAACATGCTGCAGTGACAAAAAATAATAAAATTCAGAAACAGTCAAAAAACAAGTCATTTTCAAAAAGCATTGTTTCTAAATCTGCGAAAGAAGAACGGAAGAGAAAATTACGTCAGCTAGCAGAAAAAGAAAGAAAATGTGGCTCAATTGAAATACAAACGAAAGCCTCAATAGATAATAATTCATCAAAGTCAAGTACTTATATCAAACAAACTATAACTAACCGTAGTGCATTTTTAATGGAATCTTTGCAAATTGATAAGCAAACTCCAAATAAAGAAGCTCAAAACAAAACTCATATATCTGACAACAAAACTGATAAACTAAGAACTGAGAATATTCAACAGCAAAAAGTAAAACATAGTATCAATCTACCTACAAGTCCTGTAAATGAAGATCATGCAAATGAATCAACGCAAACTAATAAACAGAGTAACTCACCTAAAAACTTTTCTAAGCCCTCTGAGACAAGTACCAAAGAAGTCTTGACCATGAAACCATTAAAAGATGCCGCAGATGCAGAAAATAAAGAAAACAAAACCATCGAAAAAAGTTTTTCTAAAGTTCAAATGCCACACAAGCCAAAAAAATCTGTTAGATTTTCGGAAGCTGGACCGATTGTTCACTTTATCAAAATTGAGCCTGGTAATCAAATGAAAGAAACAAAATTGGCAAAAACATATAATACCGTCAATCATAAACAAAAACCTAGATATTCGCTAGACAAAATAAATTTGATCAGGATTCTGGGTTGGCTTCCTTCCTGGTTTCAAGAACAAAATAATTTTAATTTTCCGCCACCAATATTAGGAGAAAATGTAGCCCCAATGACCATTTTCCATAAATTTGAGAGTCATAAACAATATGTCAAATTAATTGGCAACTTAATTCTGGTGGAAATATGGGAGTTTTTAACATTAGCCTATATGAAATCAGACAGTGAAAACCGTTCTATGGAAATGAGAATTCAGTCGGTACCACCTCCTCCAACCTCAACATTTTCTTACAATTTCTACAACATCCTTGTTGATTATAAAGTAGCGTCGCCTGAATCGAGATATGTTCCTAGAGTTGGAGACATCGTTATAGTTGGATTAATATCAACATCACTGAGAGACCAGCGATTTTTCTTTGTCCAAGATGTAAGGCAACTTCCTTCAACTTCAAGTAAAACACATTCATTTTTCTGTATATCCTTGCAGGGTAAATACTCTGATAAAACGAATATCTTTAAACAAGGCGACAATATAATTGTCAAACCTTTAACTTCAATTACAAAAGAATTGTTGCTGTTTGAAGCGATGGATTATTTAGCAAGTTCACCATTATGTAGCACCATATTGAATCCAGAACCAAGTCATTTTGCTAAGGTTGAGTCTACAGTGGACATGAATTTACAGTGGATGAAGACGCTTAATCATAGTCAACAAACAGCAGTCTGTGCTTCCGTTTCGTCTGCGATGAGTGAACGTCCAAGTCTGCAAATGATACAAGGCCCTCCGGGAACGGGTAAATCGAGTGTCATTTGTGCCATAGTAAAAACCTATTTTTATGACGGCAATAATAAAAAGCATCAAAACAGAGGAAAAATATTGATCTGCGCAACTAGCAATGCGGCTGTGGATGAATTGGTGATCAGGTTATTGAATATAAGACAAAAATTGCCGAAGGAGGAGCGGTTCGGCATGGTCCGCGTGGGCCGCGTAGAGGCCATGCACCCGCGCGCGCAGCTCGTCAGCTCGCACCAGCTGGCGCTGCGGGAGGAGGCGCGACACGACGCGCACGCGCACCACCCCGCCGTCGCGCAGGAGATAGCGATCCTAGAAGCCAAACTTAACATGTGGAAGGTTGCAATAGAGAACGCCAAAGATGCCGGCCGAATAGCGTACTGCCAAGGACGCATCAACGAGTTCTCGAAGAAAATCCAATCGCTGCAGAGCAAGGGACGCGCGGGCGGCGGGCTGGCGGCGGTGGAGCGCCGCATCGTGGAGGGCGCTGACGTCATCGTCACCACGCTCGGCAGCGCGCTCAACTACAAGATGCGCGGATTGAAACACCGGATAGCACTGTGCATAATAGACGAAGCCGGACAAGCTATCGAACCCGAGACTCTGATCCCGCTGGCCCTGGACGTCAAGCACGTTACTCTGATCGGGGACCCGCAACAGCTACCAGGATATATTTGCTCTCAGCGAGCCAAGGAGCACAGGCTGGGCGAGAGTCTGTTCTCTCGGCTGACGTCATGCGCGGAGCACTGGGCAGAGAGTCCGGTCGTGCTGCTGAACCAGCAGTACCGCATGCACCCGGACATCGTGGACTACCCCAACCGCAGCTTCTACAACTCCCTCATCCGCACCGTGTACGCGCCCAGACCCCCCATCGACGTGCCGCCTTACTGCATCGTCAGTGTGTCTAGTGGAGACACGACGCAGAGTTCGGTAGGAGTCAACGAAACGGAAGCGTGGGGCGTGGCGCGGCTGGCGGGCGCGCTGGCGGGCGTCACCCGAGACCGCGGGCTCAGCCTGGCCATCATAACGCCATACAATGCGCAGAAAGATCTCATCAAGGAAAACCTCCGAAAACTTCACGCAAGGGGCACGGCTGGCGTGGAGGTCAACACGGTGGACAGCTTCCAGGGGCAAGAGCGGGACGTGGTGGTGGTGTCGGTGGCGCGCACGCACGGCGTCGGCTTCCTGTCGCACGCCGGCCGGACCAACGTCATGCTCACCCGCGCGCGGCACGCGCTGCTCGTCTGCCTCGACCCGCACGCTACTCTTAAAAATCCCCAATGGCGTACACTGATAGAAGATGCGCAACAAAGGAATATGTACAGAGTGCTTCCCAGTTTTTTGTGTCACCCCGGAAATGTGATGCAAATACCCGACGAACAAATACTGAAGTGCTTACAAACTCCGCGGTAG

Protein

MAMWKLIRHAFGNEEFTLREGKEETVGRGVENTITLSSIVISRRHCVIKVEKNQILITDLKSSNGVYVGQKKIPPNEPFPVNNHDIIGFGWAVGAPLMRINNTEKYVFQLQKLSNGIPIADRIQYEEECNGFDEEVEIPKNNIFNKTPIAQKRKNEDNLCLDEYVKEIKKERNDEIILLSDSENEIKKESFPGNSKHATLEPIEEEVQIQNNIKFEAFDIKQEYIVEYDDVPIEINDDSDSELNQWYRRLSKNSPVKCLPKFKTESKPEDEEQNNISYSQQDDYYNNDFFEDDNNEDIFSNDIIIISEPSNSNNDSLLVQNGSDAKINESKNVNFANDITNEQQCLDSKQDEVDTIEQPEYFKPTKSEKPTNISSNFHSQASHKAKLIEPQMHVKKNKAKHAAVTKNNKIQKQSKNKSFSKSIVSKSAKEERKRKLRQLAEKERKCGSIEIQTKASIDNNSSKSSTYIKQTITNRSAFLMESLQIDKQTPNKEAQNKTHISDNKTDKLRTENIQQQKVKHSINLPTSPVNEDHANESTQTNKQSNSPKNFSKPSETSTKEVLTMKPLKDAADAENKENKTIEKSFSKVQMPHKPKKSVRFSEAGPIVHFIKIEPGNQMKETKLAKTYNTVNHKQKPRYSLDKINLIRILGWLPSWFQEQNNFNFPPPILGENVAPMTIFHKFESHKQYVKLIGNLILVEIWEFLTLAYMKSDSENRSMEMRIQSVPPPPTSTFSYNFYNILVDYKVASPESRYVPRVGDIVIVGLISTSLRDQRFFFVQDVRQLPSTSSKTHSFFCISLQGKYSDKTNIFKQGDNIIVKPLTSITKELLLFEAMDYLASSPLCSTILNPEPSHFAKVESTVDMNLQWMKTLNHSQQTAVCASVSSAMSERPSLQMIQGPPGTGKSSVICAIVKTYFYDGNNKKHQNRGKILICATSNAAVDELVIRLLNIRQKLPKEERFGMVRVGRVEAMHPRAQLVSSHQLALREEARHDAHAHHPAVAQEIAILEAKLNMWKVAIENAKDAGRIAYCQGRINEFSKKIQSLQSKGRAGGGLAAVERRIVEGADVIVTTLGSALNYKMRGLKHRIALCIIDEAGQAIEPETLIPLALDVKHVTLIGDPQQLPGYICSQRAKEHRLGESLFSRLTSCAEHWAESPVVLLNQQYRMHPDIVDYPNRSFYNSLIRTVYAPRPPIDVPPYCIVSVSSGDTTQSSVGVNETEAWGVARLAGALAGVTRDRGLSLAIITPYNAQKDLIKENLRKLHARGTAGVEVNTVDSFQGQERDVVVVSVARTHGVGFLSHAGRTNVMLTRARHALLVCLDPHATLKNPQWRTLIEDAQQRNMYRVLPSFLCHPGNVMQIPDEQILKCLQTPR

Uniprot

A0A2A4JT41 A0A2A4JSD2 A0A194QUK5 A0A194PX18 A0A067RDW2 A0A2J7QSQ7 + More
A0A2J7QSR6 A0A0C9PKP5 A0A0C9QE55 A0A158NGK1 A0A0J7KNB2 A0A026WPB3 A0A088AIQ2 E2C4Q6 A0A1B6CQI3 A0A3B0KKV4

Pubmed

26354079 24845553 21347285 24508170 30249741 20798317 + More

EMBL

NWSH01000661 PCG74946.1 PCG74947.1 KQ461190 KPJ07236.1 KQ459590 + More
KPI97309.1 KK852567 KDR21193.1 NEVH01011228 PNF31614.1 PNF31615.1 GBYB01001588 JAG71355.1 GBYB01001589 GBYB01001590 JAG71356.1 JAG71357.1 ADTU01015065 LBMM01005045 KMQ91868.1 KK107139 QOIP01000003 EZA57808.1 RLU25226.1 GL452568 EFN77064.1 GEDC01021502 JAS15796.1 OUUW01000012 SPP87179.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000027135 UP000235965 UP000005205 + More
UP000036403 UP000053097 UP000279307 UP000005203 UP000008237 UP000268350

Pfam

PF13087   AAA_12        + More
PF00498   FHA
PF13086   AAA_11
PF01035   DNA_binding_1

Interpro

IPR027417   P-loop_NTPase        + More
IPR041677   DNA2/NAM7_AAA_11
IPR008984   SMAD_FHA_dom_sf
IPR041679   DNA2/NAM7-like_AAA
IPR000253   FHA_dom
IPR036217   MethylDNA_cys_MeTrfase_DNAb
IPR014048   MethylDNA_cys_MeTrfase_DNA-bd
IPR036388   WH-like_DNA-bd_sf
IPR001497   MethylDNA_cys_MeTrfase_AS

SUPFAM

SSF49879   SSF49879        + More
SSF52540   SSF52540
SSF46767   SSF46767

Gene 3D

1.10.10.10

CDD

cd00060 FHA
cd06445 ATase

ProteinModelPortal

A0A2A4JT41 A0A2A4JSD2 A0A194QUK5 A0A194PX18 A0A067RDW2 A0A2J7QSQ7 + More
A0A2J7QSR6 A0A0C9PKP5 A0A0C9QE55 A0A158NGK1 A0A0J7KNB2 A0A026WPB3 A0A088AIQ2 E2C4Q6 A0A1B6CQI3 A0A3B0KKV4

PDB

6I59 E-value=2.4706e-40, Score=421

KEGG

101738676 K10706 senataxin [EC:3.6.4.-] | (RefSeq) probable helicase senataxin

GO

GO:0004386 GO:0006281 GO:0003908 GO:0005515 GO:0051260 GO:0005249 GO:0006813 GO:0008076 GO:0005216 GO:0006811 GO:0016020 GO:0005634 GO:0006260

Length:

1372

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0124699999999999

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00038

outside

1 - 1372

Pi

174.784357

Theta

162.610286

Tajima's D

0.10545

CLR

14.954272

CSRT

0.394830258487076

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics