Silkworm Genome Informatics Database

Gene

KWMTBOMO06586

Pre Gene Modal

BGIBMGA011807

Annotation

PREDICTED:_potassium_voltage-gated_channel_protein_Shab_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr11(-):11121358-11178341 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.144

CDS

ATGGGAGGCGAGGGGGCGGGCCGCGGCGCCGCGCGCTGTCACGTGGGCGACTCGCCCCCGCGCGCGCCCGCCATGGGGTTCGCGGCGCCTGCGCAGGACGCGCTGCTCGACCGCGGGCTCGCACCTGCACCCGCGCCTGCACCCACACTCGCCGCGCTGCACCGGGCGCATTCCAGGTCGATGTCGTCTTTACCTCCGGAGCCGTTTATGATGCTCCGTGCTAAAGCTTTAAGCAAGCGCGTCATCATCAACGTGGGTGGTGTAAGACACGAGGTGCTATGGAGAACCCTAGAACGACTGCCGCACACGCGGCTTGGCCGACTACGGGACTGCAACACGCACGAAGCCATCACAGAACTCTGCGATGACTATTCGCTTCAGGATAACGAGTACTTTTTTGACAGACACCCGAAGAGCTTTAGTTCGATTTTAAATTTCTATCGAACTGGTAAACTTCACTTAGTGGATGAAATGTGTGTGTTGGCATTCAGCGATGATCTCGAGTATTGGGGCGTGGATGAGTTGTATCTGGAGTCTTGTTGTCAACACAAGTATCACCAACGGAAGGAGCACGTTCATGAGGAGATGCGCAAGGAAGCCGAAAGTTTAAGGCAGCGGGAAGAAGAGGAGTTTGGTCAGGGCACATGTGCTCAATATCAGAAATGGCTTTGGGACTTATTGGAGAAGCCGACCACGAGCATTGCGGCGCGGGTGATTGCTGTGATATCGATTCTTTTCATCGTGCTCTCCACGATAGGGCTCACTCTCAACACAATCCCTCAAATGCAAGTTCACGATGACAAAGGCCCGATGGACAATCCGAAGCTGGCCATGGTCGAGGCCGTGTGCATCACTTGGTTCACGCTCGAGTATGTGCTGCGGTTTAGTGCCTCACCGGATAAGTGGAAGTTTTTTAAAGGTGGACTGAACGTTATAGACTTACTGGCGATACTGCCGTATTTTGTGTCTCTATTCCTTCTCGAAACAAATAAGAACGCTACGGATCAGTTCCAAGACGTGCGTCGTGTTGTTCAAGTATTTCGTATAATGCGAATACTGCGCATCCTCAAACTTGCACGACATTCGACCGGGTTGCAATCCCTCGGTTTCACACTCAGGAACTCTTATAAAGAGCTCGGCCTTCTAATGTTGTTCCTCGCTATGGGAGTGCTTATATTTTCTTCGCTGGCGTACTTTGCCGAAAAGGAAGAACCTGGTACCAAATTCATTTCGATTCCGGAAACATTCTGGTGGGCCGGCATCACCATGACGACAGTCGGATACGGTGACATTTACCCTACGACTCCGTTGGGCAAGGTCATCGGCTCAGTATGCTGTATCTGCGGCGTGTTGGTAATTGCGTTACCCATTCCCATTATCGTCAACAATTTCGCCGAGTTTTACAAGAATCAGATGCGGCGCGAGAAAGCCCTTAAGCGTCGAGAGGCTCTCGAGCGAGCCAAGCGCGAGGGCTCCATAGTATCTTTCCACCACATAAACCTACGAGACGCTTTCGCCAAGAGCATGGACCTCATCGACGTCATTGTTGACACAGGACACAATTTGTCGCAGGCGGATGCTACTAGTTTGGAAGGCGAAGCTCCTGTGACCACTGGCTGCTATAAACAATACGAACACAGTATACCCAACAAGCTCTCTCTCGATACAGAATCAAATCAGGGTAGCCCTAAAAAAGAGAGACGGTACTCCAATGAAGTCCCCGGCACGCCAGAGAAGCGTCTCCTCATAAACCCCGAGCCTACTCCTGGTTACAAGGAGTTCATAGATGCAGAGCAATTGATGCCTATGTCCACGTCTGATCTGCGCCAGCCAGTCTGTGTAGAACTGGCTTGTCTTCAGCGACATCCTGCACCCAAGGCTCTACCAGAGGCCACACCTAATAGTTTAGATAGCCCAGATACATTTGCATCATGCCTTACGCACCCTTTTCCTTCAGAGGGAGACATCGCATGCGAGAACGACTCGTCAAACTTGTATGTGAATCCTCTGGATGGTAGCGGCGGGGGCGGCGCGGGTGCGGGAGAGGGTGGGGTACCGGGGGTACGGCGGAGCGCTTCCGGGGACGGGAACGTGTTGTGTGCGAAGGGTTCGCAGGGCGAGGTGTCACCGCGCGGGTCGCGGGCCAGTCTGAGCGGCGCTGTAGTGCGGCCCCTCGACGCCTCGAGGACCAGTCTGCCGCAGCCCTTAGACGATTTACCCGACGACACAAAGCCCAAACACAGAAAAGCTCGCTTCCAACAGGAATGGACCGACGAAGAGAGGAAGCCGCCGAGGGGTATAGCAACGAGGATAATCAATCACCACATCCTTTTTGGTAAAAACGGCAACAAACGGGGGGGCGGCTGGCCGTCAGAAGGCGACTCGCGTTCCCGGTCCATCCTCAAGAACAAGGAGTCGCGCGGTACAGACAGCGAGCTGCTTCTGCAAGAAACTACATCACTCGGCGCAAATGGTGACTCCGGTAGTGAATCATCGCCGATCCGACTAAAAGACTTCAAAGGCCAAAACCACAAAGGTGGAGCACCGGAGAGGGATAACGTGATGACGTAG

Protein

MGGEGAGRGAARCHVGDSPPRAPAMGFAAPAQDALLDRGLAPAPAPAPTLAALHRAHSRSMSSLPPEPFMMLRAKALSKRVIINVGGVRHEVLWRTLERLPHTRLGRLRDCNTHEAITELCDDYSLQDNEYFFDRHPKSFSSILNFYRTGKLHLVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKEHVHEEMRKEAESLRQREEEEFGQGTCAQYQKWLWDLLEKPTTSIAARVIAVISILFIVLSTIGLTLNTIPQMQVHDDKGPMDNPKLAMVEAVCITWFTLEYVLRFSASPDKWKFFKGGLNVIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKEEPGTKFISIPETFWWAGITMTTVGYGDIYPTTPLGKVIGSVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALERAKREGSIVSFHHINLRDAFAKSMDLIDVIVDTGHNLSQADATSLEGEAPVTTGCYKQYEHSIPNKLSLDTESNQGSPKKERRYSNEVPGTPEKRLLINPEPTPGYKEFIDAEQLMPMSTSDLRQPVCVELACLQRHPAPKALPEATPNSLDSPDTFASCLTHPFPSEGDIACENDSSNLYVNPLDGSGGGGAGAGEGGVPGVRRSASGDGNVLCAKGSQGEVSPRGSRASLSGAVVRPLDASRTSLPQPLDDLPDDTKPKHRKARFQQEWTDEERKPPRGIATRIINHHILFGKNGNKRGGGWPSEGDSRSRSILKNKESRGTDSELLLQETTSLGANGDSGSESSPIRLKDFKGQNHKGGAPERDNVMT

Similarity

Belongs to the potassium channel family.

Uniprot

H9JQK1 A0A194Q1N3 A0A3S2N8D3 A0A2W1BHC6 A0A212EL53 A0A2H1WB33 + More
A0A0L7KZN1 A0A194QNY0 A0A1B6DFT9 A0A3L8DBX3 A0A158NTV8 A0A154PHG5 A0A1B6JNJ6 A0A0C9PRF2 T1HHT4 K7IR59 J9K7A2 B0WR28 Q16VB8

Pubmed

19121390 26354079 28756777 22118469 26227816 30249741 + More
21347285 20075255 17510324

EMBL

BABH01012076 KQ459590 KPI97310.1 RSAL01000209 RVE44242.1 KZ150049 + More
PZC74452.1 AGBW02014142 OWR42198.1 ODYU01007483 SOQ50291.1 JTDY01004183 KOB68489.1 KQ461190 KPJ07233.1 GEDC01012792 JAS24506.1 QOIP01000010 RLU17854.1 ADTU01002821 ADTU01002822 ADTU01002823 ADTU01002824 ADTU01002825 ADTU01002826 KQ434908 KZC11316.1 GECU01006892 JAT00815.1 GBYB01003868 JAG73635.1 ACPB03004531 ACPB03004532 ABLF02035646 ABLF02035648 DS232049 EDS33126.1 CH477597 EAT38515.1

Proteomes

UP000005204 UP000053268 UP000283053 UP000007151 UP000037510 UP000053240 + More
UP000279307 UP000005205 UP000076502 UP000015103 UP000002358 UP000007819 UP000002320 UP000008820

PRIDE

H9JQK1

Pfam

PF02214 BTB_2 + More
PF00520 Ion_trans

Interpro

IPR028325   VG_K_chnl        + More
IPR011333   SKP1/BTB/POZ_sf
IPR003971   K_chnl_volt-dep_Kv9
IPR003968   K_chnl_volt-dep_Kv
IPR000210   BTB/POZ_dom
IPR005821   Ion_trans_dom
IPR003131   T1-type_BTB
IPR027359   Volt_channel_dom_sf
IPR003973   K_chnl_volt-dep_Kv2

SUPFAM

SSF54695 SSF54695

Gene 3D

1.20.120.350

ProteinModelPortal

H9JQK1 A0A194Q1N3 A0A3S2N8D3 A0A2W1BHC6 A0A212EL53 A0A2H1WB33 + More
A0A0L7KZN1 A0A194QNY0 A0A1B6DFT9 A0A3L8DBX3 A0A158NTV8 A0A154PHG5 A0A1B6JNJ6 A0A0C9PRF2 T1HHT4 K7IR59 J9K7A2 B0WR28 Q16VB8

PDB

4JTD E-value=2.72532e-62, Score=608

KEGG

101738948 K04885 potassium voltage-gated channel Shab-related subfamily B member 1 | (RefSeq) potassium voltag

GO

GO:0005249 GO:0008076 GO:0034765 GO:0051260 GO:0005244 GO:0005267 GO:0016021 GO:0005515 GO:0006813 GO:0005216 GO:0006811 GO:0016020 GO:0005634 GO:0006260 GO:0055085

PANTHER

PTHR11537

Length:

856

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

122.01564

Exp number, first 60 AAs:

0.00532

Total prob of N-in:

0.21313

outside

1 - 233

TMhelix

234 - 256

inside

257 - 275

TMhelix

276 - 293

outside

294 - 307

TMhelix

308 - 327

inside

328 - 378

TMhelix

379 - 401

outside

402 - 415

TMhelix

416 - 433

inside

434 - 439

TMhelix

440 - 462

outside

463 - 856

Pi

224.396591

Theta

182.410245

Tajima's D

0.401618

CLR

0.485621

CSRT

0.486125693715314

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics