Gene

KWMTBOMO06584

Pre Gene Modal

BGIBMGA011668

Annotation

SoxE_[Bombyx_mori]

Location

Bomo_Chr11(+):11065622-11093025      View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 3.666

CDS

ATGAGTTGGGGCCAGGAGCGCGACAGGTCCGGGGACAAGCTGGAGATAAACGAGGCCGTCGGAAAACTCGTGAAAATATTTGACTACGATACAATACTGCCGCAACCAACGAAAGGTGGTGGGTGTATGCGTCGTCCACACGTCAAGAGACCGATGAATGCATTCATGGTGTTCGCGCAAGCGATGCGCCGCCGTTTGTCGGCCGAACGACCCTCCCTGCACAACGCCGAACTCAGCAAATCATTAGGATCCATGTGGAAAAATTTAAGCGAAGAGGAGAAGCTGCCTTTCATTAAAGAAGCAGATAAGTTACGAACGCAACATAAAAAACAGCACCCGGATTACAAATACCAGCCTCGACGTCGGAAGCCGCCGCTAGCTTCAGCTTCAACCCCGAGAGTCAAACGGGAATCATCTCCTGATCGAAACCACATAGATTTCTCGGGCATGCCGGAAATATCCGCTGCTTTACTAATGGACGGCCCACCGGACGGTACCGAATTAGACCAGTACCTCGAGCCCAGACCGGTGCCAAATTACCACGAGCTACAACCTCGATACGGAACGCATACACTAACGCACCACGTACCGCCACCTCTATACGGTCCGGTACCGTCCCATCTCCACCCGCCCTGTATTGATTGCCCACATTACGTTGATCACCCCTAA

Protein

MSWGQERDRSGDKLEINEAVGKLVKIFDYDTILPQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLASASTPRVKRESSPDRNHIDFSGMPEISAALLMDGPPDGTELDQYLEPRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPPCIDCPHYVDHP

Uniprot

F5BAR0   H9JQ62   A0A212EL29   A0A194QUK0   A0A2A4J2Z3   A0A2W1BLD4   + More
A0A194PVG2   A0A2H1VUR2   A0A1W4X6L7   R9QKX9   A0A2P1M9J1   Q0WX50   G7PVA3   Q08G17   G3N274   Q9IB79   A0A3Q1MN22   U4MKU1   F1Q8I8   Q567L2   C0LEW2   M5D4L2   H3BHH2   Q0GA74   E2G4I5  

Pubmed

19121390    22118469    26354079    28756777    29527799    22002653    + More
19393038    23594743    19653320    9215903   

EMBL

HQ728280    ADZ96251.1    BABH01012077    AGBW02014142    OWR42196.1    KQ461190    + More
KPJ07231.1    NWSH01003849    PCG65763.1    KZ150049    PZC74454.1    KQ459590    KPI97312.1    ODYU01004271    SOQ43964.1    JX162021    AFQ62059.1    MG515833    AVP27297.1    AJ786387    CAH10150.1    CM001291    EHH58302.1    AY581214    AAU08210.1    AB035887    BAA95427.1    HG326974    CDG23658.1    CU074420    BC093134    AAH93134.1    FJ697174    ACN54527.1    HF562320    CCP19141.1    AFYH01011656    DQ884961    ABI34568.1    HM234670    ADK60865.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000218220    UP000053268    UP000192223    + More
UP000009130    UP000009136    UP000000437    UP000008672   

PRIDE

F5BAR0    H9JQ62    G3N274   

Pfam

PF00505   HMG_box        + More
PF12444   Sox_N

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       
IPR022151   Sox_N       
IPR029548   SOX-9       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

F5BAR0   H9JQ62   A0A212EL29   A0A194QUK0   A0A2A4J2Z3   A0A2W1BLD4   + More
A0A194PVG2   A0A2H1VUR2   A0A1W4X6L7   R9QKX9   A0A2P1M9J1   Q0WX50   G7PVA3   Q08G17   G3N274   Q9IB79   A0A3Q1MN22   U4MKU1   F1Q8I8   Q567L2   C0LEW2   M5D4L2   H3BHH2   Q0GA74   E2G4I5  

PDB

4EUW     E-value=7.9618e-25,     Score=279

KEGG

100862769    K18435 transcription factor SOX9 (SOX group E) | (RefSeq) SoxE

GO

GO:0003677   GO:0005634   GO:0000981   GO:0005737   GO:0033339   GO:0030916   GO:0001228   GO:0048708   GO:0048709   GO:0007417   GO:0043049   GO:0048839   GO:0051216   GO:0035118   GO:0060536   GO:0045944   GO:0003682   GO:0002009  

PANTHER

PTHR45803:SF1  

Length:

222

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00052

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.14923

outside

1  -  222

 

 

Pi

201.539107

Theta

174.352058

Tajima's D

0.102889

CLR

0.960568

CSRT

0.39838008099595

Interpretation

Uncertain