Gene
KWMTBOMO06577 Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011662
Annotation
PREDICTED:_zinc_finger_CCCH_domain-containing_protein_18_isoform_X3_[Bombyx_mori]
Location in the cell
Nuclear Reliability : 4.156
Sequence
CDS
ATGGATTCTGAAGATTCTAGAGATGGAAATGGAGATGCTCGATCATCTTCAAGTAGTAGCAGTTCGAGTTCCAGGAGCAGGAGGAGCTCATCATCAGACAGAAGTAGAAGATCTAAAAAAGATTCTAAGTTACCGCCTCACTCTCCTCGATCTGGTGGTTCAGGTGGTCCACATTCTCCTTCTCCAGATAGTCAGTCACAATCTCCTTTGCATCCAACATCCAATCAACACCGAGGAGCTAGTTCCCCAGGGAACATGAGCGGCGCTCATTCTGATATTAATTCTCCTGAAAATTCAATGCCTGGATCACCTTTAGGTCCTAAATCTCCAAGTACTCCTAAATCTAGTGATGTGGGTTCCAATCCAGGATCACCTACATTCACTCAACAGTACAGTCCTGTTCCCAATAGTATGAATGAAGGGCCAAAGACTCCACAAAGTCCTAGTGGGTCCACAAAATCTCGTACTGGTTCCCCAGATACTAGATCTCGACCAGCATCACCAGATTCACAGTCACAACCTACAACTCCTACAAGTAAACGACAGTCAAGATCATCGTCGTCCAGTCCTTCTCCAGATCGCAATCCATCTACCTCATTAGATAAAAGATTACCAGTAAATAAAAATGATTGGAGTCCAAAAGAACAGTGGAGAAGACATACAAAAGCTGAACAGAAAATGGTACCAGCTCCACGCAGTCGTAGCAGATCTGAGTCAAGTCAATCTAGCATTTCTTCATACAATAAAAGAAATTCTAAAGAGCCAGGAACAGAAGAAATATCAGAAGGTGAAATGGAATCAGAGGAAGAAGACAAGAAATCTACAGGACAATCACCAACGAGTGAGAAACAGGATAATAAAAACTTAAATATCAGTCATGAGGATTTGTCTGATGTATCAGATTTGGATTCCATGGGAGAAGACACAGAGAAGCAAGCCAAGCCAAAGTCACCAGCTTCAGAAACCAAAGAAGTCAACATCAATGGTTCACAGTCCTCTCCAAAATCGGATGGTTCTAAAACAGAATTGCCTAAACATGACAAAGTTCCTCGTGAAAAAACCAGCAACACTGAAGATGCAGAGGAACAGCTGGATTTTGAGGCTGAAGAAGGGGAATGTATTGAACCCAAGACAGCTGAATGTGAAAACGGAGAAATTGAAGAGAAAGGCGAAGAAAAAGAGGAAGCTAAACCAGGTAAACGGTCGAGAGGCTCTTCGTTGGAGGAAGGCGAGGTCTCCGATGAGGCAGAGCGACGACCAGAAGAAAGTGAGCCTCGACCAGTTTGCAGGTTTTTTGCACGCGGAGCTTGTACATGGGGCGTCAGCTGCAGGTTTCTGCATCCTGGAGTTACTGATAAAGGCAACTATAATATGTTTGATGTCATACGGGGAGTACCCACCGCCCCCGCGCGTGATCCCCAACCTCCTGAGTCGGCTTGGGAACGCGGTCTTCGCACTGCCAAAGAGATGCTACGCATAGCGAACAAGCGCAAGGAGCAGGACATGGACTTCGAGGAGAAGAAGCTACACCTGTCGGTGGGCGGGGCCGTGCACGATCCCGACGCCGAGCTCGCGTACGCCGCCGCCGCCGTCGGAGCCTCGCCGCCGAGACACGCCGACATGCCGCCCTACTACCGGGAACATGAACTAAGAGCATACGGGCCGATGTATCGCGGCAGATTCCCGCGGCCCCCCGGTCCGGATGAACGCGAGCGGTACTACGAGCGTGAGCGTGCGTACGAGCAACACGAGCGACCCTACGAACGCATGCCTCCGCACTTCGAAGAGGGCATACCGGAGGACGCCCCTTATCACAAGCAGAGGCGGGTTCGCTCATCCCGAGAGGTGATCGTGCAGCGCGCGGAAGTGGAACGCAGAGAGGGACGCGGCCGGGAAGTGCGGGGCGAAGCGCGAGGGGAGGGGCGGGGTGAAGGGCGGGGGGAGGGCCGCGGGGACGAGTGGGCTGATCCCTGGATGCGCGCCGAGCCTGCAGCCAGGAGACGCCGTCCACCCTCCTCCGACGACTCATACTCCTCAACCAGCTCGAGAAGCTCGAGGTCCCCAGGCGCGCGTCGCAAAAGGAGAGCTTCATCCTCGTCGAGACAAAGATTATCGCCATCAGTGATAGTCCGCGAGCGCAGGTTGGCGACAGCGCGCGCCACCGCCATGAACCCGCCGGCGCCGCGGCGTCGCGCTCTGTCGCCCGCCACCGCGCGACAAGGCGCCGTCAACCCGCCGCCGCCCGCCTCCTTCAGACACAAGGTAACGCACGACGCCGCAACGTTTTAA
Protein
MDSEDSRDGNGDARSSSSSSSSSSRSRRSSSSDRSRRSKKDSKLPPHSPRSGGSGGPHSPSPDSQSQSPLHPTSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVPNSMNEGPKTPQSPSGSTKSRTGSPDTRSRPASPDSQSQPTTPTSKRQSRSSSSSPSPDRNPSTSLDKRLPVNKNDWSPKEQWRRHTKAEQKMVPAPRSRSRSESSQSSISSYNKRNSKEPGTEEISEGEMESEEEDKKSTGQSPTSEKQDNKNLNISHEDLSDVSDLDSMGEDTEKQAKPKSPASETKEVNINGSQSSPKSDGSKTELPKHDKVPREKTSNTEDAEEQLDFEAEEGECIEPKTAECENGEIEEKGEEKEEAKPGKRSRGSSLEEGEVSDEAERRPEESEPRPVCRFFARGACTWGVSCRFLHPGVTDKGNYNMFDVIRGVPTAPARDPQPPESAWERGLRTAKEMLRIANKRKEQDMDFEEKKLHLSVGGAVHDPDAELAYAAAAVGASPPRHADMPPYYREHELRAYGPMYRGRFPRPPGPDERERYYERERAYEQHERPYERMPPHFEEGIPEDAPYHKQRRVRSSREVIVQRAEVERREGRGREVRGEARGEGRGEGRGEGRGDEWADPWMRAEPAARRRRPPSSDDSYSSTSSRSSRSPGARRKRRASSSSRQRLSPSVIVRERRLATARATAMNPPAPRRRALSPATARQGAVNPPPPASFRHKVTHDAATF
Summary
Uniprot
Proteomes
PRIDE
Pfam
PF18044 zf-CCCH_4
SUPFAM
SSF90229
SSF90229
ProteinModelPortal
PDB
3E00
E-value=0.000658788,
Score=105
Ontologies
GO
Topology
Length:
762
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00015
outside
1 - 762
Population Genetic Test Statistics
Pi
226.485072
Theta
201.51484
Tajima's D
0.604043
CLR
0.259007
CSRT
0.539823008849557
Interpretation
Uncertain
