Gene

KWMTBOMO06576

Pre Gene Modal

BGIBMGA011811

Annotation

Dmc1_homolog_[Bombyx_mori]

Location

Bomo_Chr11(-):10829041-10830161      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.782 Nuclear   Reliability : 2.373

CDS

ATGCTTGAGCAGGCTCTCGATGATAACATTTCTGAAAACGATGATGAAGAAAGTTTCTTCCAAGACGTTGACATATTGCAAAAGCATGGCATTAACGTAGCAGACATAAAAAAACTAAAAGCTGCTGGTATCTGTACAATCAAAGGTATTCAAATGTCAACAAAAAAAAAATTAACAAACATTAAAGGCTTTTCAGATACCAAAGTAGAAAAAATCAAAGAAGCGTGTCAAAAAGTTGTAACACTTGGATTTATGACTGCTTTAGAAGTTAGTGATCGGCGCAAACAAGTGTTCAAAATAAGCACCGGTAGCACGGAACTAGATAAGCTGCTAGCTGGCGGAATTGAATCAATGGCAATAACAGAAGTTTTCGGCGAGTTCCGTACAGGAAAAACTCAATTATCTCATACATTATGTGTTACGACTCAAATCCCCAATTCTAAAGGTTACCAAGGCGGGAAAGTAATGTTTTTGGACACTGAGCATACGTTGTATCCTTTGATAATCTTTAACAGTTACAATCTCCAGCTAATTAATGTAGTGGTAATGCAATTTACTGTTATACCACATGTCCCAAATATTTTGGGTCATTTTAATAATTTCATTCCTTTGAAGGAGGAGCCCACCCGGCAAATGTCGAAATAG

Protein

MLEQALDDNISENDDEESFFQDVDILQKHGINVADIKKLKAAGICTIKGIQMSTKKKLTNIKGFSDTKVEKIKEACQKVVTLGFMTALEVSDRRKQVFKISTGSTELDKLLAGGIESMAITEVFGEFRTGKTQLSHTLCVTTQIPNSKGYQGGKVMFLDTEHTLYPLIIFNSYNLQLINVVVMQFTVIPHVPNILGHFNNFIPLKEEPTRQMSK

Similarity

Belongs to the RecA family.

Uniprot

O01680   A0A2A4K2Q3   A0A2W1BHH7   A0A2H1V702   A0A3S2LTS6   A0A194PVH7   + More
A0A194QQH4   A0A212ENU8   A0A0L7KU47   A0A1B6BXB5   A0A1B6C4V9   E0VAT8   A0A2T7PYH8   R4LAY2   A0A3S1HAQ1   A0A210R4F7   A0A2C9K3B0   A0A1S4E8Z5   A0A3Q2PRP9   A0A0P7Z259   A0A2P6K6C0   H2XT98   A0A1W5BH02   A0A091S4F8  

Pubmed

28756777    26354079    22118469    26227816    20566863    28812685    + More
15562597    12481130    15114417   

EMBL

U94994    AAB53331.1    NWSH01000215    PCG78329.1    KZ150089    PZC73721.1    + More
ODYU01001000    SOQ36601.1    RSAL01000209    RVE44253.1    KQ459590    KPI97327.1    KQ461190    KPJ07220.1    AGBW02013617    OWR43154.1    JTDY01005780    KOB66635.1    GEDC01031382    JAS05916.1    GEDC01031028    GEDC01028750    JAS06270.1    JAS08548.1    DS235015    EEB10495.1    PZQS01000001    PVD38447.1    KC119408    AGL11959.1    RQTK01000733    RUS75520.1    NEDP02000449    OWF55907.1    JARO02001724    KPP74590.1    MWRG01024042    PRD21872.1    EAAA01000688    EAAA01000689    KK942198    KFQ51562.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000009046    UP000245119    UP000271974    UP000242188    UP000076420    UP000079169    UP000265000    UP000034805    UP000008144   

PRIDE

O01680   

Pfam

PF08423   Rad51

Interpro

IPR011940   Dmc1        + More
IPR003593   AAA+_ATPase       
IPR033925   Rad51_DMC1_RadA       
IPR027417   P-loop_NTPase       
IPR020587   RecA_monomer-monomer_interface       
IPR016467   DNA_recomb/repair_RecA-like       
IPR010995   DNA_repair_Rad51/TF_NusA_a-hlx       
IPR013632   DNA_recomb/repair_Rad51_C       
IPR020588   RecA_ATP-bd       

SUPFAM

SSF52540   SSF52540        + More
SSF47794   SSF47794       

CDD

cd01123  Rad51_DMC1_radA

ProteinModelPortal

O01680   A0A2A4K2Q3   A0A2W1BHH7   A0A2H1V702   A0A3S2LTS6   A0A194PVH7   + More
A0A194QQH4   A0A212ENU8   A0A0L7KU47   A0A1B6BXB5   A0A1B6C4V9   E0VAT8   A0A2T7PYH8   R4LAY2   A0A3S1HAQ1   A0A210R4F7   A0A2C9K3B0   A0A1S4E8Z5   A0A3Q2PRP9   A0A0P7Z259   A0A2P6K6C0   H2XT98   A0A1W5BH02   A0A091S4F8  

PDB

2ZJB     E-value=9.60116e-58,     Score=562

KEGG

693117    K10872 meiotic recombination protein DMC1 | (RefSeq) Dmc1, Dmc1h; Dmc1 homolog

GO

GO:0005524   GO:0006281   GO:0000150   GO:0005634   GO:0007131   GO:0008094   GO:0003677   GO:0000730   GO:0003690   GO:0000794   GO:0006312   GO:0003697   GO:0042148   GO:0000166   GO:0015299   GO:0006419   GO:0015923   GO:0006260  

Length:

214

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.54111

Exp number, first 60 AAs:

0.00028

Total prob of N-in:

0.11505

outside

1  -  214

 

 

Pi

243.143145

Theta

171.803308

Tajima's D

1.350219

CLR

132.903163

CSRT

0.755812209389531

Interpretation

Uncertain