Silkworm Genome Informatics Database

Gene

KWMTBOMO06570

Pre Gene Modal

BGIBMGA011660

Annotation

PREDICTED:_glycogen-binding_subunit_76A_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr11(+):10602565-10669607 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.644

CDS

ATGAGCGGAGATCGCGCAGGATCACCGTGCGGTCTGACATCGATACTGCCGATGTCTTGCCGAGGGCGTGCCGTCGCGTTCGCGCGCCACCTACAAACACGGCTACGTAACCTGAGCGGAACACAGGACGAAGACTGTGAGAGCAGCTGGCTTACCCGAGAAAACGCTCAACTCAACAGACCACCAACCTCCCCGGGACAACGCGACCACGACACTTTCTACGATTTCGAATTAGAATGCGAGAGCCCATGCAGTCCCATTGATGAATGCGACCATCCTTTTCCTGAACGATCCCCCACCGAAGATCAGGACCTACCTTTCTACGATGTCGATTCGGATCCAGAAATAAAAGAACAAGCGAAACAGTTATTGCAACAGAACGATAAAGGGAAGAACGGATTTAAATTCGCTACAGCCTTTTACTCAGATAGCTCGCCCGTGAAACTTCAGCCAGCCCCACGAGAAAACGGTCATGTTGATAAACCACTATATTCCCCTATAACGTTTGAGGGTTGTGCGCGACAGAAAAGTTATGATGAAGTTGATAACGCTACGTCATCTACGATACCCAAGACAGAATTCAGCGCTATACCGTTTCATCTCAGTACGACAATTGACAGTGACTCTGAGTTTGAATCTGCTAAGAGTGATCCTTCCGACGCTGCCGATGATATTATAAAAGTTGAAAATGGCGTTGATGAATTAACAGATTGCGTAGAAAATTTATCACTCATTGATGTTGATATTCCTATGGATGAAGATGTATCTCGAGTAGAAACAGTAGAAGAAGAACCAGCAGAATCTAAATGTTTGAAAACGGAACCTTTAGAAATAATTACCAGTGAAGTTCCTAATGAAAAAGAAGTATCCCCTTCTCCAGAAATTGAACCTTCACTTTTAAGTGTAGAAACTCCGAATGAAGAACAAGAAACGGAAGATGATAAGCCTCAACGCGTCCGACGTTGTTCTTCCTTGAAGACTGGCAAAACCCCACCCGGCACACCGGGACGGAAAAAAATTGTTCGCTTCGCAGATGTCCTCGGACTCGATTTAGCGGACGTAAAAACATTTATGGACGAAATACCGGTAATCCCGAAATCTGCTTATGATGATCTCACAGGATGCGATGTGCAAAATTCTCCACCGGTTCGAAGCCCTCAACGACTTGGCGCGCTCACCTTGATTCCACTTTTTCAGCTGCCGCGGGACGTCACGGACAAACTGGAAAGACAGAATGTGTGTTTGGAGAGTGCTAGGGTTTGCGATGGCGTGCACGTAACCGTATGTGGTTCCGTGCGCGTACGTAACTTGGACTTTCACAAAACCGTACACATTCGGTACACAATGAACAGATGGAGAACTTACACAGACTTGCAGACTACATACGTTCAAGGGTCCTGCGATGGTTACTCGGACCGATTCCAATTTGTTTTATACGTTCCGGCTATAACTTCAGGACAGAGACTCGAAATCGCCGTGCGATTCCAGTGTAAAGGGCAGCAATTCTGGGACAATAATTGCGGAGCCAATTATTGCTTTGATTGTTTAGCGCTGGGTGCTGTTCCTAACGCTGCACCTTTAGCTTCAGGGCCACTGCATCCAGCTGTCGACTGGCACCCGTCATTCTACTGA

Protein

MSGDRAGSPCGLTSILPMSCRGRAVAFARHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPIDECDHPFPERSPTEDQDLPFYDVDSDPEIKEQAKQLLQQNDKGKNGFKFATAFYSDSSPVKLQPAPRENGHVDKPLYSPITFEGCARQKSYDEVDNATSSTIPKTEFSAIPFHLSTTIDSDSEFESAKSDPSDAADDIIKVENGVDELTDCVENLSLIDVDIPMDEDVSRVETVEEEPAESKCLKTEPLEIITSEVPNEKEVSPSPEIEPSLLSVETPNEEQETEDDKPQRVRRCSSLKTGKTPPGTPGRKKIVRFADVLGLDLADVKTFMDEIPVIPKSAYDDLTGCDVQNSPPVRSPQRLGALTLIPLFQLPRDVTDKLERQNVCLESARVCDGVHVTVCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFQFVLYVPAITSGQRLEIAVRFQCKGQQFWDNNCGANYCFDCLALGAVPNAAPLASGPLHPAVDWHPSFY

Uniprot

H9JQ54 A0A2A4K2S1 A0A2A4K226 A0A2A4K339 S4PKZ5 A0A1E1WEF9 + More
A0A1E1WJ38 A0A1E1WGW2 A0A2W1BJ48 A0A194PWC3 A0A2H1VMM7 A0A0L7LAD0 A0A212ENW4 A0A194QNY9 T1PE65 A0A1I8M8F0 A0A1I8PBZ6 A0A0K8VEM9

Pubmed

19121390 23622113 28756777 26354079 26227816 22118469 + More
25315136

EMBL

BABH01012109 NWSH01000215 PCG78316.1 PCG78315.1 PCG78314.1 GAIX01004285 + More
JAA88275.1 GDQN01005709 JAT85345.1 GDQN01004024 JAT87030.1 GDQN01004824 JAT86230.1 KZ150089 PZC73714.1 KQ459590 KPI97303.1 ODYU01003386 SOQ42080.1 JTDY01001970 KOB72427.1 AGBW02013617 OWR43147.1 KQ461190 KPJ07243.1 KA647065 KA647067 KA647068 KA649714 AFP61696.1 GDHF01015042 JAI37272.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000037510 UP000007151 UP000053240 + More
UP000095301 UP000095300

PRIDE

H9JQ54

Pfam

PF03370 CBM_21

Interpro

IPR038175 CBM21_dom_sf + More
IPR005036 CBM21_dom

Gene 3D

2.60.40.2440

ProteinModelPortal

H9JQ54 A0A2A4K2S1 A0A2A4K226 A0A2A4K339 S4PKZ5 A0A1E1WEF9 + More
A0A1E1WJ38 A0A1E1WGW2 A0A2W1BJ48 A0A194PWC3 A0A2H1VMM7 A0A0L7LAD0 A0A212ENW4 A0A194QNY9 T1PE65 A0A1I8M8F0 A0A1I8PBZ6 A0A0K8VEM9

PDB

2M83 E-value=2.57538e-16, Score=210

KEGG

101745881 K07189 protein phosphatase 1 regulatory subunit 3A/B/C/D/E | (RefSeq) glycogen-binding subunit 76A

GO

GO:0005515 GO:0005524 GO:0006468 GO:0016021 GO:0006812 GO:0015299 GO:0006419 GO:0015923 GO:0005634 GO:0006260

Length:

543

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01178

Exp number, first 60 AAs:

0.00888

Total prob of N-in:

0.00142

outside

1 - 543

Pi

233.975897

Theta

173.751089

Tajima's D

1.089485

CLR

0.251252

CSRT

0.687465626718664

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics