Gene

KWMTBOMO06562

Pre Gene Modal

BGIBMGA011656

Annotation

PREDICTED:_transmembrane_protein_170A_[Amyelois_transitella]

Location

Bomo_Chr11(+):10542305-10542828      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.124

CDS

ATGTATGACATGTTGTCTGAATTCAGAGTTTCAGAATTCGATTCATTTGTGGATATATTAAGATTGACTTCTGGTGATCCGTTAGATACGTTTGGTGAAATGTGGTACCCAATGTTCCTTTGGTCATTATGTTCTTCAGTGTTTGTGCACACATGTGCGGCTCTTGTAGCCATTGGAACTCTAAGGAAGCACAAATATGGCAAGTTTTTTCCTGTTCTGCTGATAGTGATGGGTGTAGTTGGTCCAGTGACTTCGGGCGTAGCCTGTAGTGCTGCCATAGCATTTATATACCGTGCTGCTAATATGGCGATGCCTCCCATACATGCTATGGTTTGGGGCATTGGTCAAACTATACTAGGAGCTGGAATAGGATTTACAAGAATTTTAGCAACATTGTAA

Protein

MYDMLSEFRVSEFDSFVDILRLTSGDPLDTFGEMWYPMFLWSLCSSVFVHTCAALVAIGTLRKHKYGKFFPVLLIVMGVVGPVTSGVACSAAIAFIYRAANMAMPPIHAMVWGIGQTILGAGIGFTRILATL

Uniprot

H9JQ50   A0A194QUL9   A0A194PWB4   S4NFL5   A0A2W1BTE6   A0A0L7LIR7   + More
A0A2H1WTK3   A0A212ENT2   I4DP07   A0A2P8XMS3   A0A067QUT4   A0A1B0D2H6   A0A0K8TNA2   Q28XK1   B4GG97   A0A0A1WZC2   A0A3B0J0G5   A0A0L0CBB9   A0A0K8V000   A0A034W733   A0A1W4VDX5   A0A1I8M3A2   A0A2J7PMH4   B4HN04   B3NN49   B4QAN2   Q7JV61   B4P832   A0A1L8D9R1   A0A1B0GHV3   B3MIK6   B4MNY9   A0A1I8PJT9   A0A1B0GEY4   A0A1W4X4E5   D6WGF7   E2BW39   B4LKP6   B4KQ87   B4J7U1   J9KAY3   A0A2M3ZL36   W5JQX3   A0A182FE46   A0A2H8TSI2   A0A0V0GCI5   A0A069DP30   A0A026WBL3   A0A2M4AWY4   A0A0C9R0B5   A0A224XP71   A0A2A3E4N5   V9IGR2   A0A182YNQ0   A0A0A9ZB48   A0A087ZXB4   A0A182M4W3   A0A0M4ETN8   A0A151IF45   A0A151J5E5   A0A310SUM2   A0A0L7RFW8   A0A182N864   A0A182T918   A0A1S3HDI1   A0A182K2B7   A0A158NYE3   A0A0T6AUW9   F4WSX6   Q7Q9M7   A0A182XJC1   A0A182VE36   A0A182UJK3   A0A182HP40   T1I5W4   A0A182P594   R7VDF6   E2ALF4   E9JA60   A0A1S3CTA7   A0A084W2F7   A0A182RTS1   A0A1L8D991   A0A232F302   A0A023EDP1   Q16GD7   A0A182GZU7   V3ZZT3   N6U7G9   K7J9D5   T1GX72   A0A131Z2Z4   A0A1B6CSZ3   A0A182WAD5   B0WW15   A0A195F5Y9   A0A1E1XL44   E0VYW9   A0A1E1X1G4   T1E2L8  

Pubmed

19121390    26354079    23622113    28756777    26227816    22118469    + More
22651552    29403074    24845553    26369729    15632085    17994087    25830018    26108605    25348373    25315136    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    18057021    18362917    19820115    20798317    20920257    23761445    26334808    24508170    30249741    25244985    25401762    21347285    21719571    12364791    23254933    21282665    24438588    28648823    24945155    17510324    26483478    23537049    20075255    26830274    29209593    20566863    28503490    24330624   

EMBL

BABH01012126    KQ461190    KPJ07251.1    KQ459590    KPI97293.1    GAIX01014989    + More
JAA77571.1    KZ149971    PZC76040.1    JTDY01000943    KOB75342.1    ODYU01010951    SOQ56383.1    AGBW02013617    OWR43139.1    AK403231    BAM19647.1    PYGN01001703    PSN33299.1    KK853239    KDR09487.1    AJVK01022817    AJVK01022818    AJVK01022819    GDAI01001754    JAI15849.1    CM000071    EAL26315.1    CH479183    EDW35517.1    GBXI01012737    GBXI01010544    JAD01555.1    JAD03748.1    OUUW01000001    SPP74155.1    JRES01000637    KNC29708.1    GDHF01020118    GDHF01006332    JAI32196.1    JAI45982.1    GAKP01009374    GAKP01009372    JAC49578.1    NEVH01023985    PNF17543.1    CH480816    EDW47308.1    CH954179    EDV56569.1    CM000362    CM002911    EDX06537.1    KMY92855.1    AE013599    AY119227    AAF58751.2    AAM51087.1    CM000158    EDW90079.1    KRJ98899.1    KRJ98900.1    GFDF01010902    JAV03182.1    AJWK01005672    AJWK01005673    CH902619    EDV38082.1    KPU77269.1    CH963848    EDW73828.1    KRF97842.1    CCAG010012634    KQ971321    EFA00548.1    GL451091    EFN80071.1    CH940648    EDW61769.1    KRF80228.1    KRF80229.1    CH933808    EDW09215.1    KRG04528.1    CH918978    CH916367    EDV90863.1    EDW01147.1    ABLF02028644    GGFM01008419    MBW29170.1    ADMH02000690    ETN65305.1    GFXV01005380    MBW17185.1    GECL01000299    JAP05825.1    GBGD01003473    JAC85416.1    KK107295    QOIP01000003    EZA53036.1    RLU24366.1    GGFK01011944    MBW45265.1    GBYB01000249    GBYB01000251    GBYB01000252    JAG70016.1    JAG70018.1    JAG70019.1    GFTR01002139    JAW14287.1    KZ288376    PBC26660.1    JR046947    AEY60288.1    GBHO01026084    GBHO01004569    GBHO01004566    GBHO01004564    JAG17520.1    JAG39035.1    JAG39038.1    JAG39040.1    AXCM01002472    CP012524    ALC40632.1    KQ977811    KYM99510.1    KQ980055    KYN17984.1    KQ760123    OAD61858.1    KQ414605    KOC69631.1    ADTU01003768    ADTU01003769    ADTU01003770    LJIG01022788    KRT78715.1    GL888331    EGI62680.1    AAAB01008900    EAA09542.3    APCN01002909    ACPB03006896    AMQN01038746    KB294581    ELU14341.1    GL440604    EFN65759.1    GL769895    EFZ10293.1    ATLV01019615    KE525275    KFB44401.1    GFDF01011062    JAV03022.1    NNAY01001174    OXU24868.1    GAPW01005950    JAC07648.1    CH478291    CH477440    EAT33298.1    EAT40880.1    JXUM01002830    JXUM01002831    JXUM01002832    JXUM01002833    JXUM01002834    JXUM01002835    JXUM01002836    JXUM01002837    KB203049    ESO86511.1    APGK01036624    KB740941    KB632409    ENN77590.1    ERL95173.1    CAQQ02116626    CAQQ02116627    CAQQ02116628    CAQQ02116629    CAQQ02116630    GEDV01002774    JAP85783.1    GEDC01020754    JAS16544.1    DS233161    DS232136    EDS28412.1    EDS35847.1    KQ981768    KYN36005.1    GFAA01003585    JAT99849.1    DS235848    EEB18575.1    GFAC01006126    JAT93062.1    GALA01000594    JAA94258.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007151    UP000245037    + More
UP000027135    UP000092462    UP000001819    UP000008744    UP000268350    UP000037069    UP000192221    UP000095301    UP000235965    UP000001292    UP000008711    UP000000304    UP000000803    UP000002282    UP000092461    UP000007801    UP000007798    UP000095300    UP000092444    UP000192223    UP000007266    UP000008237    UP000008792    UP000009192    UP000001070    UP000007819    UP000000673    UP000069272    UP000053097    UP000279307    UP000242457    UP000076408    UP000005203    UP000075883    UP000092553    UP000078542    UP000078492    UP000053825    UP000075884    UP000075901    UP000085678    UP000075881    UP000005205    UP000007755    UP000007062    UP000076407    UP000075903    UP000075902    UP000075840    UP000015103    UP000075885    UP000014760    UP000000311    UP000079169    UP000030765    UP000075900    UP000215335    UP000008820    UP000069940    UP000030746    UP000019118    UP000030742    UP000002358    UP000015102    UP000075920    UP000002320    UP000078541    UP000009046   

PRIDE

H9JQ50    Q7JV61   

Pfam

PF10190   Tmemb_170        + More
PF04135   Nop10p

Interpro

IPR019334   Transmembrane_pr_170        + More
IPR007264   H/ACA_rnp_Nop10       
IPR036756   H/ACA_rnp_Nop10_sf       

SUPFAM

SSF144210   SSF144210       

Gene 3D

2.20.28.40    

ProteinModelPortal

H9JQ50   A0A194QUL9   A0A194PWB4   S4NFL5   A0A2W1BTE6   A0A0L7LIR7   + More
A0A2H1WTK3   A0A212ENT2   I4DP07   A0A2P8XMS3   A0A067QUT4   A0A1B0D2H6   A0A0K8TNA2   Q28XK1   B4GG97   A0A0A1WZC2   A0A3B0J0G5   A0A0L0CBB9   A0A0K8V000   A0A034W733   A0A1W4VDX5   A0A1I8M3A2   A0A2J7PMH4   B4HN04   B3NN49   B4QAN2   Q7JV61   B4P832   A0A1L8D9R1   A0A1B0GHV3   B3MIK6   B4MNY9   A0A1I8PJT9   A0A1B0GEY4   A0A1W4X4E5   D6WGF7   E2BW39   B4LKP6   B4KQ87   B4J7U1   J9KAY3   A0A2M3ZL36   W5JQX3   A0A182FE46   A0A2H8TSI2   A0A0V0GCI5   A0A069DP30   A0A026WBL3   A0A2M4AWY4   A0A0C9R0B5   A0A224XP71   A0A2A3E4N5   V9IGR2   A0A182YNQ0   A0A0A9ZB48   A0A087ZXB4   A0A182M4W3   A0A0M4ETN8   A0A151IF45   A0A151J5E5   A0A310SUM2   A0A0L7RFW8   A0A182N864   A0A182T918   A0A1S3HDI1   A0A182K2B7   A0A158NYE3   A0A0T6AUW9   F4WSX6   Q7Q9M7   A0A182XJC1   A0A182VE36   A0A182UJK3   A0A182HP40   T1I5W4   A0A182P594   R7VDF6   E2ALF4   E9JA60   A0A1S3CTA7   A0A084W2F7   A0A182RTS1   A0A1L8D991   A0A232F302   A0A023EDP1   Q16GD7   A0A182GZU7   V3ZZT3   N6U7G9   K7J9D5   T1GX72   A0A131Z2Z4   A0A1B6CSZ3   A0A182WAD5   B0WW15   A0A195F5Y9   A0A1E1XL44   E0VYW9   A0A1E1X1G4   T1E2L8  

KEGG

101746264    no KO assigned | (RefSeq) transmembrane protein 170A

GO

GO:0016021   GO:0030515   GO:0042254   GO:0001522  

PANTHER

PTHR22779  

Length:

132

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

68.69815

Exp number, first 60 AAs:

22.57806

Total prob of N-in:

0.09110

POSSIBLE N-term signal

sequence

outside

1  -  36

TMhelix

37  -  59

inside

60  -  71

TMhelix

72  -  94

outside

95  -  108

TMhelix

109  -  131

inside

132  -  132

 

 

Pi

140.995049

Theta

151.369881

Tajima's D

-0.70814

CLR

185.455799

CSRT

0.194190290485476

Interpretation

Uncertain