Gene

KWMTBOMO06554

Pre Gene Modal

BGIBMGA011826

Annotation

PREDICTED:_ataxin-1-like_[Bombyx_mori]

Location

Bomo_Chr11(-):10335279-10336574      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.084

CDS

ATGCGCACGGAAGACTTTGTTATGAGTGCAGATCGTATTGGTGAACTGGCACTCACGCAGTGTACCGTCCTGAGGCTAGACGAGCGGGGCGACAAACTAGCACTTACGCTTACATACGGAAGGAATCGCTCTCAGGTGGAGTTAGAGTCGACCGTGGAACATCCGTTCTTCGTGTACGGTCGGGGATGGGCGTCATATAAACCTGAGCGTACGTTGGCACAATACGGCCTGCGTGTACATCGGCTTCAGATAGGAGATGTGTTCGTGTCATTGGCCCCGAGAAAACATGCGTCACCCGCGCCTCCCGCCCCCAGCTCTATGCCACCGTCGGCACCTCCACAGACACATCCAGAGAACCTTAGTGTCAAAGAGGATGCCCGTAAAAGACGCTGGTCAGCCTCCGATGTATGCGAAGAAGACCATCCACCCCTCAAAAAACGTTGA

Protein

MRTEDFVMSADRIGELALTQCTVLRLDERGDKLALTLTYGRNRSQVELESTVEHPFFVYGRGWASYKPERTLAQYGLRVHRLQIGDVFVSLAPRKHASPAPPAPSSMPPSAPPQTHPENLSVKEDARKRRWSASDVCEEDHPPLKKR

Uniprot

H9JQM0   A0A2A4JBE4   A0A2W1BTF6   A0A3S2NHR2   A0A0L7LE63   A0A212ENV6   + More
A0A2H1WPQ7   A0A194PWA4   A0A194QQL4   A0A1B6JE41   A0A1B6I2V6   V5I9D8   V5GUL1   A0A0A9XB30   A0A0K8TI46   A0A1B6E312   A0A1E1XHA1   A0A131XNY3   A0A224YTY8   A0A131YMQ0   A0A2S2QK53   A0A2H8TI86   A0A2S2P2Q1   J9K6L1   A0A182ILX6  

Pubmed

19121390    28756777    26227816    22118469    26354079    25401762    + More
28503490    28049606    28797301    26830274   

EMBL

BABH01012137    NWSH01002125    PCG69086.1    KZ149971    PZC76050.1    RSAL01000094    + More
RVE47876.1    JTDY01001455    KOB73828.1    AGBW02013617    OWR43131.1    ODYU01010147    SOQ55049.1    KQ459590    KPI97283.1    KQ461190    KPJ07260.1    GECU01010222    JAS97484.1    GECU01026476    GECU01014730    JAS81230.1    JAS92976.1    GALX01003110    JAB65356.1    GALX01003109    JAB65357.1    GBHO01026743    GBHO01026741    JAG16861.1    JAG16863.1    GBRD01000652    JAG65169.1    GEDC01005003    GEDC01002538    JAS32295.1    JAS34760.1    GFAC01000534    JAT98654.1    GEFH01001300    JAP67281.1    GFPF01006144    MAA17290.1    GEDV01008709    JAP79848.1    GGMS01008932    MBY78135.1    GFXV01001925    MBW13730.1    GGMR01011076    MBY23695.1    ABLF02040692   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000007151    UP000053268    + More
UP000053240    UP000007819    UP000075880   

PRIDE

H9JQM0   

Pfam

PF08517   AXH

Interpro

IPR003652   Ataxin_AXH_dom        + More
IPR036096   Ataxin_AXH_dom_sf       

SUPFAM

SSF102031   SSF102031       

ProteinModelPortal

H9JQM0   A0A2A4JBE4   A0A2W1BTF6   A0A3S2NHR2   A0A0L7LE63   A0A212ENV6   + More
A0A2H1WPQ7   A0A194PWA4   A0A194QQL4   A0A1B6JE41   A0A1B6I2V6   V5I9D8   V5GUL1   A0A0A9XB30   A0A0K8TI46   A0A1B6E312   A0A1E1XHA1   A0A131XNY3   A0A224YTY8   A0A131YMQ0   A0A2S2QK53   A0A2H8TI86   A0A2S2P2Q1   J9K6L1   A0A182ILX6  

PDB

4J2J     E-value=5.55403e-14,     Score=182

KEGG

101740207    no KO assigned | (RefSeq) ataxin-1-like

GO

GO:0003723   GO:0005515   GO:0051536   GO:0016791   GO:0006812   GO:0015299   GO:0006419   GO:0015923   GO:0005634   GO:0006260  

Length:

147

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.22897

outside

1  -  147

 

 

Pi

158.610299

Theta

188.741794

Tajima's D

-0.935859

CLR

0.405707

CSRT

0.149392530373481

Interpretation

Uncertain