Silkworm Genome Informatics Database

Gene

KWMTBOMO06548 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011650

Annotation

PREDICTED:_nuclear_receptor_coactivator_5_[Amyelois_transitella]

Location

Bomo_Chr11(+):10221455-10228034 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.375

CDS

ATGGCTGACAACCTTACGTTGGATAGGATTGATATGAAACAGAAATCAACGGCTCATCTTCGAATTTACGTCGGAGCCTTAAGTGATAATACCACTGTTGAAGAACTCTATGATTACTTCATACAATACGGGAAAATAGATGGGATTATAGTTAATAGAAATTTTGGATTTGTGCAATTCGCCGAAGAATCAAGTGCACAGGAAGCAATAAAAAAAGCTAATGGTAGCGTATTCAAAGGAAAAAATATCCCTGTCAGAGCCGCAACTGATAAAAGACGAGATGTTGAAACCGTAACGATATATCCAGAAGTGCCACCTGCTGTTGCACTAAAAGACACTCAAATGGAAGATGAAAGTGAGGAAGCTTATGACAACTATGGAAATAATAATGATCATGGTTTTCAAGAGGAATTTGAAGAGGGCAACAACAGGCCCGAAATTCATGATGAGAGAGGTAGAGGCCGTGGCCGTGGCTTAGGGCCACGAGGTAAAGGAGTCCGTGGGGCACGATCAAGAGGTCCAAGTTTCTGTGATAGACCACCCATCAATCCATCAGGTGAATGGGTTGATCGGAGTGGTTATAACCGATTTCCAAAGCCCCCTGAGTATCCACGAACTCTGCCGGTACCAGAAAGGAATGATTGTGAAATCATTGTTGTTGCGAAGAGTCTCACAGAATATGCGGAATATATTGAAAATAGACTCAAAAGATTGGGTATAGTCGTCGATTTGCTGTTTCCAATGGAAGACGTGCCGATCGGCAAAGTTCTCGGTAACATAGCTTCGAGAGGATGTCTCTACGCTATATTGGTTATGCCGATGAATTTGGAACACAGATCTTTGACCTTAACAATATTACACGGACTACCTCAAGAACATAGAAATATGCCAATAGAAGACGCATTGCAGCTGTTATCGCGCAATTTCCAAGAGGTCCAGCGCGGTGGTCCTTCCGGTCGTGAAGCAGTATATGCTCTGCTCGGACAACTTGCTGACGGCCGTTCACTTACCGTATTACAATACAACAAAGTTATCGAGTATTTACAGGAACGTCGTGACCATCAAGTAAAACTAGAATTGGGAGAAACTTCGACAGCTCCTGTGACTGCTACAACAAACAAAACACAAGTTGAACTACAGCAGAGAATTATGAATATTCTCAATGACAAGAACGTACAGACACCGCCTCCGGCACCCGTTGTCGCTCCGGCTCCTGTAAACACTACCACCGCGACGACCACTGCACAGAACAAATTACTTAACGACCCTTCATTGAGGAAAGCACTGGATTCTATATTACAAAAAATCACTTAA

Protein

MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQEAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDERGRGRGRGLGPRGKGVRGARSRGPSFCDRPPINPSGEWVDRSGYNRFPKPPEYPRTLPVPERNDCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMPMNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSRNFQEVQRGGPSGREAVYALLGQLADGRSLTVLQYNKVIEYLQERRDHQVKLELGETSTAPVTATTNKTQVELQQRIMNILNDKNVQTPPPAPVVAPAPVNTTTATTTAQNKLLNDPSLRKALDSILQKIT

Uniprot

H9JQ44 A0A2H1VAZ3 A0A2A4JN37 A0A212EQS1 S4PM54 A0A194PV49 + More
A0A0L7L5Z5 A0A194QP14 A0A084VF08

Pubmed

19121390 22118469 23622113 26354079 26227816 24438588 + More

EMBL

BABH01012147 BABH01012148 ODYU01001414 SOQ37562.1 NWSH01001010 PCG73138.1 + More
AGBW02013252 OWR43819.1 GAIX01003735 JAA88825.1 KQ459590 KPI97276.1 JTDY01002785 KOB70736.1 KQ461190 KPJ07268.1 ATLV01012360 KE524785 KFB36552.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000037510 UP000053240 + More
UP000030765

PRIDE

H9JQ44

Pfam

PF00076 RRM_1 + More
PF03129 HGTP_anticodon

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR035979   RBD_domain_sf
IPR036621   Anticodon-bd_dom_sf
IPR003954   RRM_dom_euk
IPR004154   Anticodon-bd

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330 3.40.50.800

ProteinModelPortal

H9JQ44 A0A2H1VAZ3 A0A2A4JN37 A0A212EQS1 S4PM54 A0A194PV49 + More
A0A0L7L5Z5 A0A194QP14 A0A084VF08

PDB

1V95 E-value=1.52931e-16, Score=211

KEGG

101736108 no KO assigned | (RefSeq) uncharacterized LOC101736108

GO

GO:0003723 GO:0003676 GO:0000166 GO:0015385 GO:0016021 GO:0006812 GO:0015299 GO:0006419 GO:0015923 GO:0005634 GO:0006260

Length:

437

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01783

Exp number, first 60 AAs:

0.00648999999999999

Total prob of N-in:

0.00676

outside

1 - 437

Pi

178.945968

Theta

20.549905

Tajima's D

0.76703

CLR

0.837366

CSRT

0.6005199740013

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics