SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06546
Pre Gene Modal
BGIBMGA011649
Annotation
PREDICTED:_uncharacterized_protein_LOC106134869_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.57
 

Sequence

CDS
ATGCCGTCAGGGGTTATATTCGTTGTTTGTATACCCTCAAGTAATTATGAATATATTTTAAAATTCGGAAAACCTAAGGATTTAATAGACATTAATGATTTCGCACCAAAACCCTTTCGCGTTGCTTTGGAATTGAGGGGCAAGAGATCCTTAAACATTCCTGTACATTTGACACAAGAACAATATTGCGATCAAGCATTCACTCAATTGGAGAGTATTAAAGAAGAACATTTTTTTACAATGGAGAACATTTTACAAGAACTTTTGAAAAAACTTCGCATAGAACACGTAGTGTGGGTGAGTGATAAAGTGGGCAATTATCACGAGGTCATATTCCCTGTTAAAACCGGGGACCAATGCGAAACGTTACTTCATTGTTTAACGCAACTTGGTATCGGTGTCAAATGTAAATCTATAGTGAGTGTTTTGCCATGTAGTGTCGTGCACTCGGCAATCGATGATGATCTAAATGACGATGAAACCATATTGCGCCAAACAGAAGACGCGAAAAGATGGAGAAGTTTCGTTGAATCAATAAGGTCAAAATTGACAGTGAAACAAGTAGTAGACGGAGTTCGCGGAGGTGGAGAGTTATCATTTGATTATCTTACTCTTATCTTAACAGCTGACTCTCTGGCAGCTTTGGGTCTTGTTGAAAATAACGCGTCTAATATAGTAGCGGCAATGCTGGTATCTCCTTTAATGGGTCCGGTGATGTCTATAACTTTCGGCACAATAATAGCCGATAGGAGTCTAATAAGGAGCGGTTTTGAAAGTCTAATTGTGGGCATGATCTTCTCTCTGATTTTTGGTTTCATATTTGGATTGATATTGGGAACGACTGAAATGCCTTGGGGATTTGGTGATTGGCCAACAGAAGAAATGAAATCACGAGGCAACGTACGATCACTTTGGATGGGCATTTTATGGGCACTAACTTCTGGAACTGGTGTAGCATTAGCTCTACTACAAGGCAGCGCGGGTCCATTAATCGGTATAGCTATTTCAGCATCTTTATTGCCACCAGTGGTGAATTGTGGTTTATTTTGGGGGTTGGCATGTATTTGGCTGCTATATCCAGGGATAAAAATGCCTCATATAAAAGGAGAATCTTACTTTGGAAACTCGTCATATCAACCTTTGTATCACGATTATATTCCAATAGAATTCGCCGTTAATGGTATTGTTAGTTGTTGTCTAACCATCGTAAACGTTATTTGTATTTTTATAACCGCCATAATATTTCTGAAGATAAAAGAAGTAGCAGCGCCCTATACTTCCAGCCCGGATTTAAGAAGATTTTGGGAGCAAGATATCAAAGTTGCTAGAGAAGCTAACAAATCTAATTTGCGAGACGAAGATGACGAAAGAACCGAATTAGTTTTAGACGACCTTAAAGAAACAGACGAAAGCATGAAGGAAAAATTAGAAGCAGCCGTCGAAGAGGCTCTGAATGACGAAACGTACAGGAAAGTGAAAAGAATGAGTTATCAAAGTCACAACGCCGACGAGATTGGCAGAACTATTGGACACCAAACTTCAAAACGATCTAGTATTTATTCAGATGCCTCTACGCCGGTAACAAAAGCTAACAGTGAAGACATAGCCGCATTGGATAAACTGCTTACGTCGATTCTCGGGATCAAGGATATCAACCGAAGATCATTTATTTCGCAACGTGATGCTTCGAGGATCAATAACATGCCCTCTATTGCGGAATTGGGGAACAGACGATCAGAATCTACACCCGATCGCATTGCGGAAGACTCTATAATAATGAGCGTAATAAATAATTTGAAAACAAATATGAATAACAGTTCTTCTGACGAAACCTTTCTAACACCTGCATGA
Protein
MPSGVIFVVCIPSSNYEYILKFGKPKDLIDINDFAPKPFRVALELRGKRSLNIPVHLTQEQYCDQAFTQLESIKEEHFFTMENILQELLKKLRIEHVVWVSDKVGNYHEVIFPVKTGDQCETLLHCLTQLGIGVKCKSIVSVLPCSVVHSAIDDDLNDDETILRQTEDAKRWRSFVESIRSKLTVKQVVDGVRGGGELSFDYLTLILTADSLAALGLVENNASNIVAAMLVSPLMGPVMSITFGTIIADRSLIRSGFESLIVGMIFSLIFGFIFGLILGTTEMPWGFGDWPTEEMKSRGNVRSLWMGILWALTSGTGVALALLQGSAGPLIGIAISASLLPPVVNCGLFWGLACIWLLYPGIKMPHIKGESYFGNSSYQPLYHDYIPIEFAVNGIVSCCLTIVNVICIFITAIIFLKIKEVAAPYTSSPDLRRFWEQDIKVAREANKSNLRDEDDERTELVLDDLKETDESMKEKLEAAVEEALNDETYRKVKRMSYQSHNADEIGRTIGHQTSKRSSIYSDASTPVTKANSEDIAALDKLLTSILGIKDINRRSFISQRDASRINNMPSIAELGNRRSESTPDRIAEDSIIMSVINNLKTNMNNSSSDETFLTPA

Summary

EMBL
NWSH01001010    PCG73140.1    ODYU01001414    SOQ37564.1    AGBW02013252    OWR43816.1    + More
KQ459590    KPI97274.1    KQ461190    KPJ07270.1    GAPW01000358    JAC13240.1    ATLV01023453    ATLV01023454    ATLV01023455    ATLV01023456    KE525343    KFB49214.1    AAAB01008980    APCN01001744    UFQT01000449    SSX24469.1    GL761846    EFZ22636.1    JXJN01003204    JXJN01003205    KZ288210    PBC32979.1    KQ414755    KOC61744.1    KQ982585    KYQ54283.1    ADMH02001647    ETN61561.1    GL887491    EGI71053.1    KQ976625    KYM79013.1    ADTU01001499    KK107153    EZA56982.1    KQ979609    KYN20148.1    KQ981979    KYN31486.1    KQ435727    KOX78076.1    KQ977642    KYN00956.1    KA645495    AFP60124.1    QOIP01000012    RLU15810.1    OUUW01000010    SPP85610.1    AE014134    BT028784    ABI31305.2    ABI34165.1    CH964274    EDW85218.2    CM002910    KMY89400.1    CM000157    KRJ97993.1    CH902620    EDV32260.2    KPU73863.1    CH954177    EDV58459.2    CH480818    EDW52355.1    GL446000    EFN88632.1    CH933807    KRG03169.1    CH940654    EDW57807.2    KRF77964.1    CH379060    EAL33371.3    GL442439    EFN63441.1    GDHF01031019    JAI21295.1    GAMC01012803    GAMC01012802    JAB93752.1    GBXI01007217    JAD07075.1    KQ760208    OAD61381.1    GAKP01012685    JAC46267.1    GDHF01013864    JAI38450.1    DS235815    EEB17505.1    PYGN01001120    PSN37428.1    GFWV01020728    MAA45456.1    KK112401    KFM57561.1    GFJQ02004495    JAW02475.1    GFJQ02007791    JAV99178.1    GANO01003649    JAB56222.1   
Pfam
PF04087   DUF389
Interpro
IPR020846   MFS_dom        + More
IPR005240   DUF389       

Ontologies

Topology

Length:
616
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
118.90225
Exp number, first 60 AAs:
0.09416
Total prob of N-in:
0.05269
outside
1  -  224
TMhelix
225  -  247
inside
248  -  258
TMhelix
259  -  281
outside
282  -  300
TMhelix
301  -  323
inside
324  -  329
TMhelix
330  -  352
outside
353  -  393
TMhelix
394  -  416
inside
417  -  616
 
 

Population Genetic Test Statistics

Pi
20.231142
Theta
19.931841
Tajima's D
-0.660357
CLR
484.027621
CSRT
0.207939603019849
Interpretation
Uncertain
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