SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06542  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011833
Annotation
PREDICTED:_protein_phosphatase_1_regulatory_subunit_16A_isoform_X6_[Bombyx_mori]
Location
Bomo_Chr11(-):10113897-10152354      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.309
 

Sequence

CDS
ATGGAGCACGCAGATTTGGTGGCCGAAATGGTCCAGGTGGAACACCTGACCACACAGGAACGGCTACATTTAGCAAGAAGACGGCGCATGCAGCAACTAAAGCTATGGCAGCAAAGGGAGAAAGAATGGGCGAGGACCAGACCGAGGAAGGAGAAAAGCACCAAAAGGAATATTTATTTTAGCGACAGTGTCATGCTACTAGAAGCGGCAGCAAGAAATGATATAGATGAAGTTCGAAGATTACTCGCGCGCGGCGTTACTCCGGACGCTACGAACGAGGACGGCCTAACAGCTCTGCACCAATGCTGCATCGACAACAACGAAGCGATGATGCGTCTTCTACTCGATCACGGGGCGAACGTCAATGCGGAGGACAGCGAGAAGTGGACCCCGCTCCACGCGGCGGCCACCTGCGGCAATCTTAATCTAGTCCGAATATTAATACAACGCGGGGCCAACCTACTGGCTGTGAACGGAGACGGGAATATGCCATACGACATCTGCGAAGAGGAAAGAACATTAGACGCGATAGAAAGTGAAATGGCAGCTAGGGGTGTGACGCAAAGGTTAATAGACGAAACGAGGGCTGCTACTGAGATGAGAATGTTATTAGACGTGGCGGAACTAGTCAAGGAGGGTATGGATTTGGACGAACCCAGGGACAATCAGGGAGCGACACTGTTGCACGTGGCTTCTGCGAATGGTTACATGAAAGTAGTGGAATATCTCTTGGAGCATCGGGCCTCCACCGACGTGGTGGACCACGACATGTGGCAGCCGGTGCACGGCGCGGCCTGCTGGGGACATTTCGAAGTATTGGAGTTACTTGTGCAGTACGGCGCCGATCTAAACGTCCGGAACAAGCATGACGAAACGCCGGCAGATATATGCGAAGAGGGCGAGCTGCGGAGTCGTATACTGCGTCTGGCGGCCGAGCAGGAGGAGCACCGGCGCCACTCCGCCGCCGACCGTCTGCGCAGCGCGCGCCGCTCCTCCTCCACCGCCAGCACCAGCAGAGTGCGGTCGGTGCGCCGGACGTCGCTCAGGGAGAAGCAGCTGACGGCCAAGGCGGACGTCCGCGGCGAGGCGAGGCTGCGGGAGACGTTCGATTCTGTCGTCGACGACGAACTGCAGGGCTTATCCAATGGCATTGAAAATGATCAAAACAGCGCCAACCTACAATCATCAGATCTATCGCACAAAAGAGTGTCAACCGACTCTACAAATTCGAACCAGAGCTACGACTCCAATGTCGAATACGCAGTCCCGAAGCACACTTACAACCAACGGGGACCGCATAGACCCAGTGACGTCAGCGACGCCTCAGACAGCATACACTTCAACCAGTCCAAGATCAGCAATCCGCTGTTCGGCGTGAACGCGGCCTCGCAGTACGCGCCCGGTTCGGTACCCGCCCCGCAACTAGAGGCGGTCAACGAGCAGACCAGACATTACGACAGGCCGAACGTGCCGAACGGCGTCAGGAAAGCTCCCGAGGGCCAGGACAACGACCCCTACAAGTCCGAGGACGCTTTAGACGGTAGGAAAGAGTTGATCGTGACACCGAACCAGATCGCGATCACAGACGGAGGCACGGCCACTTACACCACAGACAATAATGGTAAAATCAATGTTCATGTCACCGTCATGATTAACGCAGGCACATTAGCGGACTTAAAGAAGCAACGTTCGCAGATAAGAACGAACGGAAGTCCAGTAGAGAATAGTCTGAATTCGACAAACAATCACAGTATCAGTTCTCTGAATGAAGCAAAGGACATGCCGGTTCAGCTGAATCCTCTGACCCTATCCCCCAGTTCCGGGACCATGCCGCGTTTTTCCGGGAACACCAGTGACGTCGTCGGCGACACCAGGTCTCATAGGTGCTGCGTCATAATGTAG
Protein
MEHADLVAEMVQVEHLTTQERLHLARRRRMQQLKLWQQREKEWARTRPRKEKSTKRNIYFSDSVMLLEAAARNDIDEVRRLLARGVTPDATNEDGLTALHQCCIDNNEAMMRLLLDHGANVNAEDSEKWTPLHAAATCGNLNLVRILIQRGANLLAVNGDGNMPYDICEEERTLDAIESEMAARGVTQRLIDETRAATEMRMLLDVAELVKEGMDLDEPRDNQGATLLHVASANGYMKVVEYLLEHRASTDVVDHDMWQPVHGAACWGHFEVLELLVQYGADLNVRNKHDETPADICEEGELRSRILRLAAEQEEHRRHSAADRLRSARRSSSTASTSRVRSVRRTSLREKQLTAKADVRGEARLRETFDSVVDDELQGLSNGIENDQNSANLQSSDLSHKRVSTDSTNSNQSYDSNVEYAVPKHTYNQRGPHRPSDVSDASDSIHFNQSKISNPLFGVNAASQYAPGSVPAPQLEAVNEQTRHYDRPNVPNGVRKAPEGQDNDPYKSEDALDGRKELIVTPNQIAITDGGTATYTTDNNGKINVHVTVMINAGTLADLKKQRSQIRTNGSPVENSLNSTNNHSISSLNEAKDMPVQLNPLTLSPSSGTMPRFSGNTSDVVGDTRSHRCCVIM

Summary

Uniprot
A0A3S2NT61   A0A2H1VLD4   A0A194Q1J4   A0A194QPJ4   A0A1L8DND3   A0A1B0CKV2   + More
J9JLX5   A0A1B0FEK1   A0A2L2YGE0   M9PFV2   A0A0P9C5A3   B3M885  
Pubmed
26354079    26561354    10731132    12537568    12537572    12537573    + More
12537574    16110336    17569856    17569867    17994087    18057021   
EMBL
RSAL01000094    RVE47867.1    ODYU01003010    SOQ41232.1    KQ459590    KPI97270.1    + More
KQ461190    KPJ07274.1    GFDF01006197    JAV07887.1    AJWK01016653    AJWK01016654    AJWK01016655    AJWK01016656    AJWK01016657    AJWK01016658    AJWK01016659    AJWK01016660    AJWK01016661    ABLF02035646    CCAG010013883    CCAG010013884    IAAA01026509    IAAA01026510    LAA07213.1    AE014296    AGB94710.1    CH902618    KPU78891.1    EDV41024.1    KPU78889.1    KPU78890.1   
Proteomes
UP000283053    UP000053268    UP000053240    UP000092461    UP000007819    UP000092444    + More
UP000000803    UP000007801   
PRIDE
M9PFV2   
Pfam
PF12796   Ank_2        + More
PF01625   PMSR
Interpro
IPR002110   Ankyrin_rpt        + More
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR002569   Met_Sox_Rdtase_MsrA       
IPR036509   Met_Sox_Rdtase_MsrA_sf       
SUPFAM
SSF48403   SSF48403        + More
SSF55068   SSF55068       
Gene 3D
1.25.40.20     3.30.1060.10    
CDD
cd00204  ANK
ProteinModelPortal
A0A3S2NT61   A0A2H1VLD4   A0A194Q1J4   A0A194QPJ4   A0A1L8DND3   A0A1B0CKV2   + More
J9JLX5   A0A1B0FEK1   A0A2L2YGE0   M9PFV2   A0A0P9C5A3   B3M885  
PDB
1S70     E-value=1.79452e-44,     Score=454

Ontologies

KEGG
101740746    K17458 protein phosphatase 1 regulatory subunit 16A | (RefSeq) protein phosphatase 1 regulatory subu
GO
GO:0008113   GO:0007476   GO:0017020   GO:0008157   GO:0004721   GO:0005515   GO:0006355   GO:0043565   GO:0020037   GO:0006259   GO:0004813   GO:0006419   GO:0015923   GO:0005634   GO:0006260  

Topology

Length:
633
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00128
Exp number, first 60 AAs:
0.00013
Total prob of N-in:
0.00037
outside
1  -  633
 
 

Population Genetic Test Statistics

Pi
211.829691
Theta
171.069598
Tajima's D
0.351405
CLR
0.855728
CSRT
0.475226238688066
Interpretation
Uncertain
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