Gene

KWMTBOMO06532

Pre Gene Modal

BGIBMGA011838

Annotation

PREDICTED:_rab11_family-interacting_protein_4A_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(-):9885196-9930599      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.262

CDS

ATGATGGCGCCCAGCGTGTTCCAGCGAACCAAATCACCTCGGTCTTCACCGGGAAACTTGCCTAGGAAACTACAGAACGGTACCGAGCCACCGGGACAATTGGACCCAACGGCCGACTCTAGCCCGGGAAATTCAATATCAGATGCTGAAAACTTTGAGTGCTACGGTGAAGCAGACGGAGACGTGCCTGTCACGTTAGAGAATGGAACGAGGAGTCCTGGTAATCCTCTTAACAGACATTCGTGGACAAGAACCAGCCTTAGGAGAACTCCACCAAGCCACCAAGAGAATCTTCCGCATCGTAGATGGGGTTCGATGAGACAGTAA

Protein

MMAPSVFQRTKSPRSSPGNLPRKLQNGTEPPGQLDPTADSSPGNSISDAENFECYGEADGDVPVTLENGTRSPGNPLNRHSWTRTSLRRTPPSHQENLPHRRWGSMRQ

Uniprot

A0A2A4K2R2   A0A194PW82   A0A2W1BVD8   A0A2H1VQS8   A0A0N1ID23   A0A1E1WCG3   + More
A0A212FP78   A0A194QQP0   A0A1B6D8G9   A0A1B6CAK6   A0A1B6CKC6   A0A1B6CQG2   A0A146KYQ1   A0A0V0G9S8   A0A146LKX4   A0A0P4VPY7   A0A1B6LNX2   A0A023F2J0   A0A224XGI1   A0A069DTQ9   A0A1B6K9F8   A0A1B6KFS5   A0A1Y1MUY1   A0A1Y1MUZ5   A0A1B6EZ00   A0A1B6G1H3   A0A0A9Z8E0   A0A0A9YYW0   A0A0A9VV49   A0A0A9VWL6   A0A0A9Z150   A0A0A9Y056   A0A0K8SU50   A0A0K8S7A0   A0A1B6F1G3   A0A1B6H4S9   A0A182W3U2   A0A1B6JGS9   A0A1B6JKJ6   A0A2M3ZBI8   A0A2M3ZA80   A0A2M3ZFP7   A0A2M4CSV6   A0A182G386   A0A2M4CSL7   A0A139WLB6   A0A139WLG9   A0A2M4C392   A0A2S2NSI8   A0A2M4AKD2   J9JXX2   A0A2M4A3E6   V5FY36   A0A2M4C2G3   A0A1S4FEJ9   Q174W4   A0A1Q3FTU5   A0A1Q3FU02   U5ERF1   A0A3R7QGN1   A0A182HXA9   A0A182X853   A0A0K2T2M5   A0A0K2T207   A0A0K2T385  

Pubmed

26354079    28756777    22118469    26823975    27129103    25474469    + More
26334808    28004739    25401762    26483478    18362917    19820115    17510324   

EMBL

NWSH01000214    PCG78339.1    KQ459590    KPI97258.1    KZ149984    PZC75723.1    + More
ODYU01003874    SOQ43179.1    LADJ01054904    KPJ21555.1    GDQN01006427    JAT84627.1    AGBW02003612    OWR55535.1    KQ461190    KPJ07285.1    GEDC01015348    JAS21950.1    GEDC01026780    JAS10518.1    GEDC01023418    JAS13880.1    GEDC01021628    JAS15670.1    GDHC01017118    JAQ01511.1    GECL01001448    JAP04676.1    GDHC01011559    JAQ07070.1    GDKW01001527    JAI55068.1    GEBQ01014526    JAT25451.1    GBBI01003376    JAC15336.1    GFTR01006282    JAW10144.1    GBGD01001426    JAC87463.1    GEBQ01031890    JAT08087.1    GEBQ01029670    JAT10307.1    GEZM01019977    GEZM01019976    JAV89493.1    GEZM01019971    GEZM01019970    JAV89503.1    GECZ01026530    JAS43239.1    GECZ01013483    JAS56286.1    GBHO01005435    GBHO01003448    GBRD01016672    JAG38169.1    JAG40156.1    JAG49155.1    GBHO01044031    GBHO01005427    JAF99572.1    JAG38177.1    GBHO01044030    GBHO01003451    GBRD01016674    JAF99573.1    JAG40153.1    JAG49153.1    GBHO01044028    GBHO01005428    GBRD01016673    JAF99575.1    JAG38176.1    JAG49154.1    GBHO01005429    GBHO01005425    JAG38175.1    JAG38179.1    GBHO01020689    GBHO01003452    GBRD01016671    JAG22915.1    JAG40152.1    JAG49156.1    GBRD01008993    JAG56828.1    GBRD01016669    JAG49158.1    GECZ01026056    JAS43713.1    GECZ01000096    JAS69673.1    GECU01009276    JAS98430.1    GECU01007972    JAS99734.1    GGFM01005165    MBW25916.1    GGFM01004688    MBW25439.1    GGFM01006646    MBW27397.1    GGFL01004167    MBW68345.1    JXUM01140992    JXUM01140993    JXUM01140994    KQ569166    KXJ68743.1    GGFL01004168    MBW68346.1    KQ971321    KYB28674.1    KYB28675.1    GGFJ01010631    MBW59772.1    GGMR01007496    MBY20115.1    GGFK01007871    MBW41192.1    ABLF02026384    ABLF02029754    GGFK01001954    MBW35275.1    GALX01005881    JAB62585.1    GGFJ01010369    MBW59510.1    CH477405    EAT41600.1    GFDL01004025    JAV31020.1    GFDL01004027    JAV31018.1    GANO01003758    JAB56113.1    QCYY01001403    ROT78267.1    APCN01005168    HACA01002699    CDW20060.1    HACA01002697    CDW20058.1    HACA01002696    CDW20057.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000075920    UP000069940    + More
UP000249989    UP000007266    UP000007819    UP000008820    UP000283509    UP000075840    UP000076407   

Pfam

PF09457   RBD-FIP        + More
PF14282   FlxA

Interpro

IPR019018   Rab-bd_FIP-RBD        + More
IPR037245   FIP-RBD_C_sf       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR025577   FlxA       

SUPFAM

SSF144270   SSF144270        + More
SSF47473   SSF47473       

ProteinModelPortal

A0A2A4K2R2   A0A194PW82   A0A2W1BVD8   A0A2H1VQS8   A0A0N1ID23   A0A1E1WCG3   + More
A0A212FP78   A0A194QQP0   A0A1B6D8G9   A0A1B6CAK6   A0A1B6CKC6   A0A1B6CQG2   A0A146KYQ1   A0A0V0G9S8   A0A146LKX4   A0A0P4VPY7   A0A1B6LNX2   A0A023F2J0   A0A224XGI1   A0A069DTQ9   A0A1B6K9F8   A0A1B6KFS5   A0A1Y1MUY1   A0A1Y1MUZ5   A0A1B6EZ00   A0A1B6G1H3   A0A0A9Z8E0   A0A0A9YYW0   A0A0A9VV49   A0A0A9VWL6   A0A0A9Z150   A0A0A9Y056   A0A0K8SU50   A0A0K8S7A0   A0A1B6F1G3   A0A1B6H4S9   A0A182W3U2   A0A1B6JGS9   A0A1B6JKJ6   A0A2M3ZBI8   A0A2M3ZA80   A0A2M3ZFP7   A0A2M4CSV6   A0A182G386   A0A2M4CSL7   A0A139WLB6   A0A139WLG9   A0A2M4C392   A0A2S2NSI8   A0A2M4AKD2   J9JXX2   A0A2M4A3E6   V5FY36   A0A2M4C2G3   A0A1S4FEJ9   Q174W4   A0A1Q3FTU5   A0A1Q3FU02   U5ERF1   A0A3R7QGN1   A0A182HXA9   A0A182X853   A0A0K2T2M5   A0A0K2T207   A0A0K2T385  

KEGG

101737965    K12485 Rab11 family-interacting protein 3/4 | (RefSeq) rab11 family-interacting protein 4A

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005509   GO:0030496   GO:0032154   GO:0032456   GO:0055038   GO:0030306   GO:0030139   GO:0032465   GO:0017137  

Length:

108

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.34049

outside

1  -  108

 

 

Pi

216.008732

Theta

172.535018

Tajima's D

0.855304

CLR

0.42948

CSRT

0.617319134043298

Interpretation

Uncertain