Silkworm Genome Informatics Database

Gene

KWMTBOMO06531 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011840

Annotation

PREDICTED:_rab11_family-interacting_protein_4A_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(-):9830859-9876419 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.159 Nuclear Reliability : 1.537

CDS

ATGTTGGACGAACAGATAAGAGAGATTGAAAGCCGATGCGAAGAGAGTATAGCAGAAGAAAAACGACGTAGCAGAGAAGCAATAACAAGAATTGAACGGGACAGGGATTCACAAATAGCTGCTCTCACCGACAGACTGACCGCCGCCGAGACCGAAGCGTCGCATCTTAAACAAGAGGTCGGTCGTCTGCGTGGCGTGGCAGAGACGCTGCAAGCGAACGCGGAGAACTTATCGCGAGCGCACCGCGAGGCGCAGGAGCAGGTCGGCGACCTGGCGGCCCAGCTGAGCGCAGCACGCGAGGCCGAGCGCCGGGAGCGGGAGGCAGCGGCGGCGGCGGGCGTGCTGTTGGCGGCCGCGCGGCGCGACCTGCTCGCCCTACGAGACGCGCCGCCGCCGCCGCCGGACCCGCGCCTCGACGAACTCACCAAGGAGCTCGTGCTGCTACGGACACAGAACAAATCACTATCAGAAGCTCAAGAGGAGCTACAAGCCCAGATCCTGACCCGTGGAGTTGAAGAAGGCCGCAGCCTGCTGGACGGGGTGAGCGGTCCGCTGGTCGCAACCAACTCGCTGGCCCATGAACTCTCGCAGATGAGCGATGACCAGCTCGAAGGTAGCCAAACACAAACCGAACACGACATAGAGTTGGAAAAGTTGCAGAAAGCTTTAAAAGAACAACAAGACGTGAACGTACAACTGAGGAATTACATCGACGGTATATTATTGGCGATCGTCGAGAACTACCCACAACTGCTCGAAGTCAAGTATCAAAAGCAACCGCCCGAAAATCTATCATAG

Protein

MLDEQIREIESRCEESIAEEKRRSREAITRIERDRDSQIAALTDRLTAAETEASHLKQEVGRLRGVAETLQANAENLSRAHREAQEQVGDLAAQLSAAREAERREREAAAAAGVLLAAARRDLLALRDAPPPPPDPRLDELTKELVLLRTQNKSLSEAQEELQAQILTRGVEEGRSLLDGVSGPLVATNSLAHELSQMSDDQLEGSQTQTEHDIELEKLQKALKEQQDVNVQLRNYIDGILLAIVENYPQLLEVKYQKQPPENLS

Uniprot

A0A1E1WPZ6 A0A1E1WKI3 A0A2H1X2T6 A0A1E1W9S1 A0A1E1W5L7 A0A2A4J6J1 + More
A0A2A4J883 A0A2W1BVD8 A0A212FP57 A0A2A4J7U2 A0A2A4J8L5 A0A2A4J6M6 A0A2A4J7K3 H9JQN4 A0A194QP45 A0A194PVA8

Pubmed

28756777 22118469 19121390 26354079

EMBL

GDQN01001959 JAT89095.1 GDQN01003540 JAT87514.1 ODYU01013013 SOQ59619.1 + More
GDQN01007443 JAT83611.1 GDQN01008788 JAT82266.1 NWSH01002655 PCG67737.1 PCG67734.1 KZ149984 PZC75723.1 AGBW02003612 OWR55534.1 PCG67738.1 PCG67733.1 PCG67735.1 PCG67736.1 BABH01012172 BABH01012173 BABH01012174 BABH01012175 KQ461190 KPJ07287.1 KQ459590 KPI97257.1

Proteomes

UP000218220 UP000007151 UP000005204 UP000053240 UP000053268

PRIDE

H9JQN4

Pfam

PF09457 RBD-FIP

Interpro

IPR037245 FIP-RBD_C_sf + More
IPR019018 Rab-bd_FIP-RBD

SUPFAM

SSF144270 SSF144270

ProteinModelPortal

A0A1E1WPZ6 A0A1E1WKI3 A0A2H1X2T6 A0A1E1W9S1 A0A1E1W5L7 A0A2A4J6J1 + More
A0A2A4J883 A0A2W1BVD8 A0A212FP57 A0A2A4J7U2 A0A2A4J8L5 A0A2A4J6M6 A0A2A4J7K3 H9JQN4 A0A194QP45 A0A194PVA8

PDB

2HV8 E-value=0.0348268, Score=85

KEGG

101737965 K12485 Rab11 family-interacting protein 3/4 | (RefSeq) rab11 family-interacting protein 4A

GO

Length:

265

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00149

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03251

outside

1 - 265

Pi

30.919396

Theta

186.534375

Tajima's D

-2.241958

CLR

0.931963

CSRT

0.00549972501374931

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics