Gene

KWMTBOMO06514

Pre Gene Modal

BGIBMGA011634

Annotation

PREDICTED:_C-type_lectin_domain_family_4_member_F_[Bombyx_mori]

Location

Bomo_Chr11(+):9626230-9628698      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.282

CDS

ATGGCAGAAATAGGCGGGGCTAATTGGTTCAAAGCCCAGCAATACTGCAGGTTCCATGGGATGCACCTCGCTTCCATATCATCGCAACAGGAAAACGATAAACTGGAGCAATACGTTAAGGACTCAGGTTACGGTCGCGAACATTTCTGGACGTCGGGCACTGATTTAGCTGAAGAAGGAAATTTCTTTTGGATGGCGAACGGCAGGCCGCTTACCTTTGTCAATTGGAACGCCGGAGAGCCGAACAACTTCAGATACGAAAATGGCGAAGAAGAGAACTGCTTGGAACTATGGAACAGAGACGATAAAGGCCTCAAATGGAACGATTCCCCTTGTTCGTTCGAAACATACTTCATTTGCGAAGTCCGATCAGATTGA

Protein

MAEIGGANWFKAQQYCRFHGMHLASISSQQENDKLEQYVKDSGYGREHFWTSGTDLAEEGNFFWMANGRPLTFVNWNAGEPNNFRYENGEEENCLELWNRDDKGLKWNDSPCSFETYFICEVRSD

Uniprot

H9JQ28   A0A3S2NQL0   A0A2W1BQ51   A0A3G1HH47   A0A2A4J7D7   A0A2H1W6S3   + More
I4DJ91   A0A0N1I522   A0A1E1WHX5   A0A212EUK9   A0A219YXJ8   A0A1B0CV96   A0A1J1I5P3   A0A1A9W4K6   A0A1W4VVQ2   A0A0R3P5W5   B4MXZ3   A0A0K8UG01   A0A034WLM5   W8AQZ3   A0A0J9UBV7   Q9W0I2   A0A1W4W6R7   A0A0R1DZU7   A0A0Q5U1Q2   A0A0Q9XBR9   N6TSW0   A0A034WI61   A0A3B0K9G3   A0A0P9AJR5   Q29EV3   A0A0Q9WU37   A0A0R3P5U4   A0A139W9K8   A0A1W4W855   B4QLZ0   B4HVQ7   B4PD61   A0A0K8V5W1   A0A0A1WZC5   B3NB82   Q8IRH8   B4LG81   A0A1Y1KXD4   D7EJZ5   B3M533   B4J2F0   B4L0N0   A0A139W9J1   A0A3F2YQ66   A0A0K8UZQ3   W5JJD6   A0A182JFN1   A0A1I8P2S6   A0A084VAT5   Q7Q7F9   A0A182N7X9   A0A2C9GWR3   A0A182KEH5   A0A0T6B0G3   A0A023EJ40   A0A182R0N0   A0A0M4EAG2   A0A3F2YQ72   J9HTH4   A0A2C9GWR2   A0A0C9PPN4   A0A0C9QHZ7   A0A182KW05   A0A3F2YSK5   A0A182UY70   A7UTM5   A0A182YPZ5   J9HJ94   A0A1I8N606   A0A2C9GWR9   E2BQT0   F4WBH8   A0A3F2YSK9   A7UTL4   A0A0L7R9D0   A0A195DKI0   A0A154PHZ1   E2AP28   A0A2S2PUU6   A0A2A3E3G9   A0A026WEP8   A0A151WX17   A0A088A5P4   A0A1B0FB62   J9K4D3   A0A232ENA7   A0A195D7A0   A0A195FU96   K7J6I4   A0A023F4S1   A0A2J7R9U3   A0A1B6EW47   A0A182XD36   A0A1B6H0B5  

Pubmed

19121390    28756777    22651552    26354079    22118469    15632085    + More
17994087    25348373    24495485    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    23537049    18362917    19820115    25830018    28004739    20920257    23761445    24438588    12364791    24945155    17510324    20966253    14747013    17210077    25244985    25315136    20798317    21719571    24508170    30249741    28648823    20075255    25474469   

EMBL

BABH01012190    RSAL01000010    RVE53696.1    KZ149984    PZC75744.1    KY111305    + More
AQX37241.1    NWSH01002906    PCG67323.1    ODYU01006705    SOQ48781.1    AK401359    KQ459590    BAM17981.1    KPI97242.1    KQ461161    KPJ08038.1    GDQN01004465    JAT86589.1    AGBW02012350    OWR45178.1    KX550119    AQY54436.1    AJWK01030316    AJWK01030317    CVRI01000042    CRK95647.1    CH379070    KRT08514.1    CH963876    EDW76982.1    GDHF01026783    JAI25531.1    GAKP01003720    JAC55232.1    GAMC01015301    GAMC01015300    GAMC01015299    GAMC01015298    JAB91255.1    CM002912    KMY96780.1    AE014296    BT012477    AAF47464.1    AAN11467.1    AAS93748.1    CM000159    KRK00724.1    CH954178    KQS43055.1    CH933809    KRG05984.1    APGK01055668    APGK01055669    KB741269    KB632330    ENN71431.1    ERL92597.1    GAKP01003721    JAC55231.1    OUUW01000009    SPP84760.1    CH902618    KPU78073.1    EAL29957.3    CH940647    KRF84350.1    KRT08513.1    KQ972213    KYB24589.1    CM000363    EDX08776.1    KMY96779.1    CH480817    EDW50022.1    EDW92809.1    GDHF01024635    GDHF01018073    JAI27679.1    JAI34241.1    GBXI01016144    GBXI01010090    GBXI01000584    JAC98147.1    JAD04202.1    JAD13708.1    EDV50135.1    BT004478    AAN11466.1    AAO42642.1    EDW69389.2    GEZM01075601    JAV64046.1    EFA12925.2    EDV39512.2    CH916366    EDV96009.1    EDW18107.2    KYB24590.1    GDHF01020175    JAI32139.1    ADMH02001057    ETN64256.1    ATLV01004459    KE524214    KFB35079.1    AAAB01008960    EAA11819.4    LJIG01016355    KRT80849.1    GAPW01004759    JAC08839.1    AXCN02000907    CP012525    ALC44241.1    CH477779    EJY57928.1    GBYB01003163    JAG72930.1    GBYB01003164    JAG72931.1    APCN01004435    EDO63645.1    EJY57929.1    GL449799    EFN81955.1    GL888063    EGI68457.1    EDO63644.1    KQ414627    KOC67485.1    KQ980765    KYN13356.1    KQ434914    KZC11432.1    GL441439    EFN64860.1    GGMR01020536    MBY33155.1    KZ288400    PBC26255.1    KK107242    QOIP01000001    EZA54542.1    RLU26875.1    KQ982691    KYQ52205.1    CCAG010023727    CCAG010023728    CCAG010023729    ABLF02032234    NNAY01003188    OXU19844.1    KQ976749    KYN08765.1    KQ981272    KYN43867.1    GBBI01002256    JAC16456.1    NEVH01006580    PNF37596.1    GECZ01027641    JAS42128.1    GECZ01004545    GECZ01001653    JAS65224.1    JAS68116.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000053240    UP000007151    + More
UP000092461    UP000183832    UP000091820    UP000192221    UP000001819    UP000007798    UP000000803    UP000002282    UP000008711    UP000009192    UP000019118    UP000030742    UP000268350    UP000007801    UP000008792    UP000007266    UP000000304    UP000001292    UP000001070    UP000069272    UP000000673    UP000075880    UP000095300    UP000030765    UP000007062    UP000075884    UP000075900    UP000075881    UP000075886    UP000092553    UP000008820    UP000075882    UP000075840    UP000075903    UP000076408    UP000095301    UP000008237    UP000007755    UP000053825    UP000078492    UP000076502    UP000000311    UP000242457    UP000053097    UP000279307    UP000075809    UP000005203    UP000092444    UP000007819    UP000215335    UP000078542    UP000078541    UP000002358    UP000235965   

PRIDE

H9JQ28    Q9W0I2    Q8IRH8   

Pfam

PF00059   Lectin_C

Interpro

IPR018378   C-type_lectin_CS        + More
IPR016187   CTDL_fold       
IPR016186   C-type_lectin-like/link_sf       
IPR001304   C-type_lectin-like       

SUPFAM

SSF56436   SSF56436       

Gene 3D

3.10.100.10    

ProteinModelPortal

H9JQ28   A0A3S2NQL0   A0A2W1BQ51   A0A3G1HH47   A0A2A4J7D7   A0A2H1W6S3   + More
I4DJ91   A0A0N1I522   A0A1E1WHX5   A0A212EUK9   A0A219YXJ8   A0A1B0CV96   A0A1J1I5P3   A0A1A9W4K6   A0A1W4VVQ2   A0A0R3P5W5   B4MXZ3   A0A0K8UG01   A0A034WLM5   W8AQZ3   A0A0J9UBV7   Q9W0I2   A0A1W4W6R7   A0A0R1DZU7   A0A0Q5U1Q2   A0A0Q9XBR9   N6TSW0   A0A034WI61   A0A3B0K9G3   A0A0P9AJR5   Q29EV3   A0A0Q9WU37   A0A0R3P5U4   A0A139W9K8   A0A1W4W855   B4QLZ0   B4HVQ7   B4PD61   A0A0K8V5W1   A0A0A1WZC5   B3NB82   Q8IRH8   B4LG81   A0A1Y1KXD4   D7EJZ5   B3M533   B4J2F0   B4L0N0   A0A139W9J1   A0A3F2YQ66   A0A0K8UZQ3   W5JJD6   A0A182JFN1   A0A1I8P2S6   A0A084VAT5   Q7Q7F9   A0A182N7X9   A0A2C9GWR3   A0A182KEH5   A0A0T6B0G3   A0A023EJ40   A0A182R0N0   A0A0M4EAG2   A0A3F2YQ72   J9HTH4   A0A2C9GWR2   A0A0C9PPN4   A0A0C9QHZ7   A0A182KW05   A0A3F2YSK5   A0A182UY70   A7UTM5   A0A182YPZ5   J9HJ94   A0A1I8N606   A0A2C9GWR9   E2BQT0   F4WBH8   A0A3F2YSK9   A7UTL4   A0A0L7R9D0   A0A195DKI0   A0A154PHZ1   E2AP28   A0A2S2PUU6   A0A2A3E3G9   A0A026WEP8   A0A151WX17   A0A088A5P4   A0A1B0FB62   J9K4D3   A0A232ENA7   A0A195D7A0   A0A195FU96   K7J6I4   A0A023F4S1   A0A2J7R9U3   A0A1B6EW47   A0A182XD36   A0A1B6H0B5  

PDB

6BBE     E-value=1.42521e-10,     Score=152

KEGG

101739843    no KO assigned | (RefSeq) C-type lectin domain family 4 member F

GO

GO:0030246   GO:0016021  

Length:

125

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00105

Exp number, first 60 AAs:

7e-05

Total prob of N-in:

0.08857

outside

1  -  125

 

 

Pi

29.56921

Theta

26.288102

Tajima's D

0.230327

CLR

0.93288

CSRT

0.432828358582071

Interpretation

Uncertain