Gene

KWMTBOMO06512

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):9611618-9613579      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.602 Nuclear   Reliability : 1.215

CDS

ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTAGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGATAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTTCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACTCCCTACAATCCCGCTTTTGCAGGTTAG

Protein

MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTIVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSFPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTPYNPAFAG

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   V5GNF3   A0A2S2PR14   J9KKL3   A0A2S2RAN7   A0A2S2Q352   X1WLB2   A0A2S2QEE0   J9KCZ4   A0A3N5Z7I3   J9LC21   J9JS95   A0A224XF24   A0A2H8U0H5   A0A023EYS8   K7IN67   X1WNI2   Q07995   D7EM17   J9KLB1   A0A0C9RJA4   A0A023EZE6   X1WN18   X1WZH0   J9KPF1   A0A2S2PPK8   X1WWC4   A0A2J7R7D0   A0A2M4BD67   A0A2S2QJM7   A0A2J7Q059   A0A2J7PMP6   A0A2J7QUJ9   A0A2M4BDV6   A0A2J7R4B7   A0A2J7RM10   A0A2J7RIW7   A0A2J7Q4F7   A0A2S2NGV8   A0A2S2N814   A0A023F6S4   J9KC83   A0A2S2PX53   J9KEU4   A0A2J7RB54   A0A2J7RPU2   A0A2J7R2E1   A0A2J7RS77   A0A2J7QFL0   A0A2J7RKP3   A0A2J7RS81   X1WXE6   A0A2J7PU96   A0A2J7PQB5   J9LF86   A0A2J7Q0Q6   A0A087UCW3   A0A2J7PMP9   A0A2J7R6U1   J9LFC9   A0A2J7Q627   A0A2J7QR37   X1WQR0   A0A2J7Q1Y9   A0A1L8DIZ6   A0A1Y1LKN6   A0A2J7QY69   A0A2J7PBY3   A0A2J7Q2R1   A0A182GB02   A0A224X746   A0A2J7QEZ4   A0A2J7Q5G9   A0A2S2PBB4   A0A224XI99   Q95SX7   A0A2M4BEF4   A0A2J7PDS9   A0A2S2PA10   X1XGU0  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
30086797    25474469    20075255    8387152    26483478    7753626    12537569   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMS01017914    MBY87117.1    GGMS01002955    MBY72158.1    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    ABLF02008463    RPOV01000134    RPJ78669.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02028535    ABLF02028545    GFTR01008038    JAW08388.1    GFXV01007093    MBW18898.1    GBBI01004395    JAC14317.1    ABLF02008153    ABLF02008462    ABLF02008464    S59870    AAB26437.2    KQ973412    EFA12510.2    ABLF02040174    ABLF02040183    ABLF02055266    GBYB01008290    JAG78057.1    GBBI01004571    JAC14141.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02034467    ABLF02041767    GGMR01018716    MBY31335.1    ABLF02003961    ABLF02059872    NEVH01006736    PNF36716.1    GGFJ01001858    MBW50999.1    GGMS01008766    MBY77969.1    NEVH01020071    PNF21969.1    NEVH01023962    PNF17612.1    NEVH01010546    PNF32261.1    GGFJ01001857    MBW50998.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01003017    PNF40781.1    NEVH01018383    PNF23463.1    GGMR01003407    MBY16026.1    GGMR01000676    MBY13295.1    GBBI01001646    JAC17066.1    ABLF02033757    GGMS01000737    MBY69940.1    ABLF02040650    ABLF02040651    ABLF02056776    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    NEVH01007838    PNF34986.1    NEVH01000280    PNF43672.1    NEVH01014858    PNF27387.1    NEVH01002716    PNF41415.1    NEVH01000269    PNF43694.1    ABLF02016634    NEVH01021205    PNF19912.1    NEVH01022639    PNF18527.1    ABLF02017815    NEVH01019964    PNF22161.1    KK119261    KFM75202.1    NEVH01023961    PNF17613.1    NEVH01006754    PNF36554.1    ABLF02023911    NEVH01017542    PNF24034.1    NEVH01011985    PNF31054.1    ABLF02050434    ABLF02064867    NEVH01019376    PNF22596.1    GFDF01007661    JAV06423.1    GEZM01053022    JAV74219.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01019080    PNF22876.1    JXUM01241784    KQ635293    KXJ62492.1    GFTR01008151    JAW08275.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GGMR01014053    MBY26672.1    GFTR01008256    JAW08170.1    AY060438    AAL25477.1    GGFJ01002256    MBW51397.1    NEVH01026154    PNF14491.1    GGMR01013409    MBY26028.1    ABLF02055645   

Proteomes

UP000053268    UP000007266    UP000007819    UP000002358    UP000235965    UP000054359    + More
UP000069940    UP000249989   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF07727   RVT_2
PF03184   DDE_1

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       
IPR013103   RVT_2       
IPR004875   DDE_SF_endonuclease_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   V5GNF3   A0A2S2PR14   J9KKL3   A0A2S2RAN7   A0A2S2Q352   X1WLB2   A0A2S2QEE0   J9KCZ4   A0A3N5Z7I3   J9LC21   J9JS95   A0A224XF24   A0A2H8U0H5   A0A023EYS8   K7IN67   X1WNI2   Q07995   D7EM17   J9KLB1   A0A0C9RJA4   A0A023EZE6   X1WN18   X1WZH0   J9KPF1   A0A2S2PPK8   X1WWC4   A0A2J7R7D0   A0A2M4BD67   A0A2S2QJM7   A0A2J7Q059   A0A2J7PMP6   A0A2J7QUJ9   A0A2M4BDV6   A0A2J7R4B7   A0A2J7RM10   A0A2J7RIW7   A0A2J7Q4F7   A0A2S2NGV8   A0A2S2N814   A0A023F6S4   J9KC83   A0A2S2PX53   J9KEU4   A0A2J7RB54   A0A2J7RPU2   A0A2J7R2E1   A0A2J7RS77   A0A2J7QFL0   A0A2J7RKP3   A0A2J7RS81   X1WXE6   A0A2J7PU96   A0A2J7PQB5   J9LF86   A0A2J7Q0Q6   A0A087UCW3   A0A2J7PMP9   A0A2J7R6U1   J9LFC9   A0A2J7Q627   A0A2J7QR37   X1WQR0   A0A2J7Q1Y9   A0A1L8DIZ6   A0A1Y1LKN6   A0A2J7QY69   A0A2J7PBY3   A0A2J7Q2R1   A0A182GB02   A0A224X746   A0A2J7QEZ4   A0A2J7Q5G9   A0A2S2PBB4   A0A224XI99   Q95SX7   A0A2M4BEF4   A0A2J7PDS9   A0A2S2PA10   X1XGU0  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0003676   GO:0006313   GO:0008270  

Length:

619

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.68556

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04250

outside

1  -  619

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.6062

CSRT

0

Interpretation

Uncertain