Gene

KWMTBOMO06508

Pre Gene Modal

BGIBMGA011849

Annotation

PREDICTED:_sodium-_and_chloride-dependent_creatine_transporter_1-like_[Bombyx_mori]

Location

Bomo_Chr11(-):9515972-9519899      View in EpiBrowser

Full name

Transporter      

Location in the cell

PlasmaMembrane   Reliability : 4.942

CDS

ATGCTAGGATCGTGTTTGTTTACGACGCTTGCCCTCGGCTCGGTGGGAGCGTGGTGCCTGGCATTGTTCGTTCACAGCTTCCACTCTTTCCTGCCGTGGCTACACTGCGCTGCTAGCGCTCGACCGGCGTGCGCTGCTAGACACCGTCCCTTACCAAGCGACAGCGAAACTCCTGCGCATTCTTTCTTTTTTAACTTCGTGCTGAATCTAAAAAGAGAAGGATTAGAAGGTGGCCTCGGAAACATCGTATGGGAACTGGCATGGTACTACATAATGTGTTGGGTTTTGATTTATTTTGTAGCAGTCAAACGAATTTACAGCTATTCGAAGTTGGTAATGTATAAGGACGTGACAGCTTTCTTTTTATTGTTGTGTTGTGGAGCGGGTGCGGTGCGTCTGGACGGCGCCGGTCGGATGTTCCATGATTGCGACTGGTCTGTCCTATTTAACGGATTTGACATTTGGCTCGAAGCTATTGAATATGCTTTATTACAAATGTCAATTTCCCATGGCACATTGATAATGTTAGGTTCTTATTGTCCGAAAGAGCGTCATAGACTTGGGACAACGGCAATGCTAGCTTTCGGAGCTTCTAAAATAAGCTGCATGATCAGCGCCTTTGTTCTTGGAGCGACACATGGAGCTTTGATGAAGGATTACGAAAATAGTAGCCATCTTTGGAGTGGGTCTGGATCAGCTATGATTTTGTGGTCGGAGTTCGTGGCCAGGGTACCCGGCAGTCAGTTTTGGTCGGCTCTACTGTTCTTTACGTTATTCGTGCTTTCAGTTTCATCAGCGGCGCTTTTAGTTCAAACTATGATGTCTACATTCACCGGCCGCTCAATTAGGAAAATTGCGTGGGCATTTCACATTGTCGTCTGCTTGTTGTTTTGTTTTATTGGCACGATAACTTTATGTACACAGGTATGA

Protein

MLGSCLFTTLALGSVGAWCLALFVHSFHSFLPWLHCAASARPACAARHRPLPSDSETPAHSFFFNFVLNLKREGLEGGLGNIVWELAWYYIMCWVLIYFVAVKRIYSYSKLVMYKDVTAFFLLLCCGAGAVRLDGAGRMFHDCDWSVLFNGFDIWLEAIEYALLQMSISHGTLIMLGSYCPKERHRLGTTAMLAFGASKISCMISAFVLGATHGALMKDYENSSHLWSGSGSAMILWSEFVARVPGSQFWSALLFFTLFVLSVSSAALLVQTMMSTFTGRSIRKIAWAFHIVVCLLFCFIGTITLCTQV

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
Belongs to the cyclin family.

Uniprot

A0A2A4K723   A0A2H1WZW3   A0A2W1BRH3   A0A194PWV1   A0A0N1PGT7   A0A212FIL1   + More
A0A194PK53   A0A212F710   A0A194RBW5   Q9U5A5   H3BDU1   A0A1B6E0P0   A0A1B6C4A9   A0A1B6CQI5   T1J0B1   H9JBG2   A0A3M6TT46   A0A2H1VK69   A0A1A8FRU3   A0A3B3V0I8   A0A3M7RZQ9   A0A3B3YT68   A0A2A4JWJ5   A0A146XZF9   A0A147AQU6   A0A3B4YWG1   A0A1A7YAE6   A0A3B5QY07   A0A1A8QZI0   A0A1A8AFF8   A0A0A9ZDX5   G3P1U3   A0A1A8LIF3   M4AHB1  

Pubmed

28756777    26354079    22118469    11060215    9215903    19121390    + More
30382153    30375419    23542700    25401762    26823975   

EMBL

NWSH01000063    PCG80037.1    ODYU01012302    SOQ58542.1    KZ149984    PZC75747.1    + More
KQ459590    KPI97239.1    KQ461161    KPJ08035.1    AGBW02008365    OWR53568.1    KQ459606    KPI91475.1    AGBW02009960    OWR49499.1    KQ460398    KPJ15092.1    AF032873    AAF21642.1    AFYH01004307    AFYH01004308    AFYH01004309    AFYH01004310    GEDC01005805    JAS31493.1    GEDC01028956    GEDC01028011    JAS08342.1    JAS09287.1    GEDC01021509    JAS15789.1    JH431734    BABH01030871    BABH01030872    RCHS01002970    RMX44565.1    ODYU01002761    SOQ40654.1    HAEB01014322    HAEC01000125    SBQ60849.1    REGN01002297    RNA29024.1    NWSH01000473    PCG76156.1    GCES01039558    JAR46765.1    GCES01005841    JAR80482.1    HADW01004002    HADX01004994    SBP27226.1    HAEH01013903    SBR98613.1    HADY01015362    HAEJ01017993    SBP53847.1    GBHO01003574    GBHO01003572    GBRD01011680    GBRD01011679    GDHC01021074    GDHC01007849    JAG40030.1    JAG40032.1    JAG54144.1    JAP97554.1    JAQ10780.1    HAEF01006729    SBR44111.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000008672    UP000005204    + More
UP000275408    UP000261500    UP000276133    UP000261480    UP000261360    UP000002852    UP000007635   

PRIDE

H9JBG2   

Pfam

PF00209   SNF        + More
PF00134   Cyclin_N
PF17098   Wtap
PF00431   CUB
PF00089   Trypsin

Interpro

IPR000175   Na/ntran_symport        + More
IPR037272   SNS_sf       
IPR002944   Na/ntran_symport_inebriated       
IPR033116   TRYPSIN_SER       
IPR018114   TRYPSIN_HIS       
IPR013783   Ig-like_fold       
IPR001254   Trypsin_dom       
IPR009003   Peptidase_S1_PA       
IPR013763   Cyclin-like       
IPR003599   Ig_sub       
IPR006671   Cyclin_N       
IPR007110   Ig-like_dom       
IPR035914   Sperma_CUB_dom_sf       
IPR000859   CUB_dom       
IPR029732   WTAP/Mum2       
IPR036179   Ig-like_dom_sf       
IPR036915   Cyclin-like_sf       

SUPFAM

SSF161070   SSF161070        + More
SSF50494   SSF50494       
SSF49854   SSF49854       
SSF48726   SSF48726       
SSF47954   SSF47954       

Gene 3D

2.60.120.290     2.60.40.10    

CDD

cd00043  CYCLIN
cd00190  Tryp_SPc
cd00041  CUB

ProteinModelPortal

A0A2A4K723   A0A2H1WZW3   A0A2W1BRH3   A0A194PWV1   A0A0N1PGT7   A0A212FIL1   + More
A0A194PK53   A0A212F710   A0A194RBW5   Q9U5A5   H3BDU1   A0A1B6E0P0   A0A1B6C4A9   A0A1B6CQI5   T1J0B1   H9JBG2   A0A3M6TT46   A0A2H1VK69   A0A1A8FRU3   A0A3B3V0I8   A0A3M7RZQ9   A0A3B3YT68   A0A2A4JWJ5   A0A146XZF9   A0A147AQU6   A0A3B4YWG1   A0A1A7YAE6   A0A3B5QY07   A0A1A8QZI0   A0A1A8AFF8   A0A0A9ZDX5   G3P1U3   A0A1A8LIF3   M4AHB1  

PDB

4XPA     E-value=4.95637e-06,     Score=119

KEGG

101740206    K05041 solute carrier family 6 (neurotransmitter transporter, creatine) member 8 | (RefSeq) sodium-

GO

GO:0005328   GO:0016021   GO:0042065   GO:0005034   GO:0019226   GO:0080009   GO:0005634   GO:0004252   GO:0015293   GO:0006836   GO:0020037   GO:0006259   GO:0004813   GO:0006419   GO:0015923   GO:0006260  

PANTHER

PTHR11616  

Length:

309

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

153.24428

Exp number, first 60 AAs:

22.24848

Total prob of N-in:

0.98774

POSSIBLE N-term signal

sequence

inside

1  -  1

TMhelix

2  -  24

outside

25  -  79

TMhelix

80  -  102

inside

103  -  110

TMhelix

111  -  133

outside

134  -  157

TMhelix

158  -  180

inside

181  -  192

TMhelix

193  -  215

outside

216  -  249

TMhelix

250  -  272

inside

273  -  284

TMhelix

285  -  307

outside

308  -  309

 

 

Pi

178.546235

Theta

145.309839

Tajima's D

0.550801

CLR

0.250985

CSRT

0.533823308834558

Interpretation

Uncertain