Silkworm Genome Informatics Database

Gene

KWMTBOMO06502 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011851

Annotation

peritrophin_type-A_domain_protein_4_[Mamestra_configurata]

Location

Bomo_Chr11(-):9362353-9366769 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.778

CDS

ATGAACAAAGCCTTGTGGCTCCTGTGTTGCGCGGCGGCGCTGGTCGGGGCCTCCGCATTCTCAATAAACTTGAGACAGAACCCGGAGACGCTGTGCATTGGCCAGGAGAACTTCCTGAGGATAGCCAGCATTGAAGATTGTTTCCACTACTTCCAGTGCTATGCTGGCCGCTCATATCTTATGCGATGTCCAGAAGAGACATGGTTTAACGAGGCAGAACAGGTTTGCGACTGGTCGGACCTACCAGAGCGCTGTGCAAAAGTTGAACCAGAACCAGAACCAGAGCCGGAACCTGAACCTGAACCCGAACCAGAACCCGAGCCTGAACCTGAGCCGGAACCAGAACCGGAGATAGAACCAGAACAAGAGCCTGAGCCAGAATCTGAACCCGAACTCGAACCCATTGATTCTGAGGAGAACCAAGTAGAAGAACCAGCGCAGCCTAGTGATGAAGTTGCTGAAAACGATGAAGGGTCCGGAGAAGAATGGCAGGAGGATGCCGTTTGGCGTTTTGTTAAATCTTCTCGCGTAAGACAGGAAGAAGTTGAACAAGAAGACGATCAAGACGATGAAGACGAAGAAGGCACTGATACTGTGGAAAATGATAATGATGACAATGAGGAGGATGACGACGAGAATGAGGAAGAGGAAGAAGCTGAAAAACGCTCGAAGAGATCATTGAGACAAGAAGAAACTGAGGGTGATGATGAGAATGAGGATGATGAGGATGAGGACGAGGATGAGGAAGAAGTTGAAAAGCGCTCTAAGAGATCATTGAAACAAGAAGAAACCGAGGATGATGATGATGATGATGATGAGGAGGAAGATGAGGACGAGGAAGAAGTTGAAAAGCGCTCGAAGAGATCATTGAAACAAGAAGAAACCGAGGATGATGATGATGATGATGATGAGGAGGGAGATGAGGACGAGGAAGAAGTTGAAAAGCGCTCGAAGAGATCATTGAAACAAGAAGAAACTGAGGATGATGATGATGATGATGATGAGGAGGATGAAGACGAGGATGAGGAAGAGGAAGAAGCTGAAAAGCGCTCGAAGAGATCATCGAGACAAGAAGAAACCGAGGGTGATGATGACGATGAGGATGATGAGGACGAGGATGAGGAAGAAGTTGAAAAGCGCTCTAAGAGATCATTGAAACAAGAAGAAACTGAGGTTAATGATGACGACGATTATGATGACGAGGATGGTGTCGAAGACGAGGACGAGGAAGAAGTTGAAAAGCGCTCTAAGAGATCATTGAGGCAAGAAGAAACTGAGGATAATGATGACGATGAGGATGAGGATGATGATGATAATGAGGATGATGTCAATGACGAGGACGAGGAAGAAGTTGAAAAGCGCTCTAAGAGATCATTGAGGCAAGAAGAAACAGAAAACGATGATGATGATCAAGAAGAGATTGAAGACGCAGAGGAAGAACTTGAAGCCGAAGAGGAAGAATTAAAAGAAAAGAGCTTCATTAAGAGGTTTTTTAAATTTTTCGCTTGA

Protein

MNKALWLLCCAAALVGASAFSINLRQNPETLCIGQENFLRIASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERCAKVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEIEPEQEPEPESEPELEPIDSEENQVEEPAQPSDEVAENDEGSGEEWQEDAVWRFVKSSRVRQEEVEQEDDQDDEDEEGTDTVENDNDDNEEDDDENEEEEEAEKRSKRSLRQEETEGDDENEDDEDEDEDEEEVEKRSKRSLKQEETEDDDDDDDEEEDEDEEEVEKRSKRSLKQEETEDDDDDDDEEGDEDEEEVEKRSKRSLKQEETEDDDDDDDEEDEDEDEEEEEAEKRSKRSSRQEETEGDDDDEDDEDEDEEEVEKRSKRSLKQEETEVNDDDDYDDEDGVEDEDEEEVEKRSKRSLRQEETEDNDDDEDEDDDDNEDDVNDEDEEEVEKRSKRSLRQEETENDDDDQEEIEDAEEELEAEEEELKEKSFIKRFFKFFA

Uniprot

H9JQP5

Pubmed

19121390

EMBL

BABH01012210

Proteomes

UP000005204

PRIDE

H9JQP5

Pfam

PF01607 CBM_14

Interpro

IPR002557 Chitin-bd_dom + More
IPR036508 Chitin-bd_dom_sf

SUPFAM

SSF57625 SSF57625

ProteinModelPortal

H9JQP5

PDB

5WVG E-value=0.00329724, Score=97

KEGG

101740802 no KO assigned | (RefSeq) acidic leucine-rich nuclear phosphoprotein 32-related protein-like

GO

GO:0006030 GO:0008061 GO:0005576 GO:0020037 GO:0006259 GO:0004813 GO:0006419 GO:0015923 GO:0005634 GO:0006260

SignalP

Position: 1 - 19, Likelihood: 0.998802

Length:

502

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

14.30371

Exp number, first 60 AAs:

14.3037

Total prob of N-in:

0.73314

POSSIBLE N-term signal

sequence

inside

1 - 4

TMhelix

5 - 24

outside

25 - 502

Pi

262.930267

Theta

146.469709

Tajima's D

2.258561

CLR

0.016265

CSRT

0.923453827308635

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	QNPETLCIGQENFLR	100.00	7e-04
28556443	QNPETLCIGQENFLR	100.00	7e-04
28556443	QNPETLCIGQENFLR	100.00	7e-04
28556443	KNEISLVDLIER	100.00	7e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics