Gene

KWMTBOMO06480  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011620

Annotation

60S_ribosomal_protein_L18_[Bombyx_mori]

Location

Bomo_Chr11(+):8644791-8646445      View in EpiBrowser

Full name

60S ribosomal protein L18      

Location in the cell

Mitochondrial   Reliability : 2.18

CDS

ATGGGTATTGACATCAATCATAAACACGACAGGAAAGTTCGGCGCACCGAAGTTAAATCTCAAGATATTTACTTGAGGTTACTTGTAAAGCTTTACAGATACTTGGCCAGACGTACAAATGCCAAATTCAATCAGATCGTTCTACGCCGGCTCTTTATGAGCCGTATCAACCGGCCACCAATCTCTGTGTCTCGTTTGGCGCGCCACATGAAGAAGCCAACTCGTGAGGGTTTGATTGCCGTGGTAGTGGGGACAGTCACAAATGACGTGAGACTGTACAAGATACCGAAGATGACGGTGGCTGCTCTTCATGTTACCGAAAAAGCTCGTGCACGCATTTTGGCTGCTGGAGGAGAAATTCTTACTTTTGATCAGCTGGCTCTTCGTGCTCCGACTGGCAAGAAGACAGTACTGGTACAAGGTCAGCGAAATGCTCGTGAGGCAGTGCGTCACTTTGGCCCTGCTCCAGGAGCACCGCGCTCTCACACTAAACCCTATGTTCGCACCAAGGGACATGAAAAAGCAAGGCCCAGTCGTCGTGCTAATGTCTAA

Protein

MGIDINHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARPSRRANV

Similarity

Belongs to the eukaryotic ribosomal protein eL18 family.

Keywords

Complete proteome   Cytoplasm   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L18

Uniprot

Q5UAS1   A0A3G1T1L9   I4DIE3   D1LYP8   Q6F442   E7DZ43   + More
E3UKN9   A0A2W1BSI4   A0A2A4JPE6   A0A194PW43   I4DLZ3   A7KCW6   G0ZEG1   A0A1E1W0J8   A0A0L7KMU0   A0A212FP40   A0A2H1WKY8   Q962Y8   A0A0N1IND8   A0A3B0E8B3   A0A0K8TC25   Q4GXG8   E2ACB8   A0A1B6GQA0   A0A1B6JHG4   A0A2I6HCK3   E9IUR4   A0A1B6LHH9   A0A154NWT5   A0A195FFF3   D6WDJ4   A0A1D1ZF53   A0A158NH76   A0A088AH51   A0A348G684   K7IX57   A0A2A3ESK4   A0A1E1WIF0   J3JU77   F4WZN7   A0A2P8ZMQ6   A0A195DYJ9   A0A1B6D1M4   A0A026WZL5   A0A067R6I1   A0A0X7YCF4   A0A131XBV5   A0A310SKA8   A0A026WZE1   A0A232FGF6   A0A2J7QKZ9   A0A195B7S6   A0A151XCW9   A0A224Z2Q6   A0A131Z390   L7M3F2   A0A0N8AJ71   A0A0P5VVD8   A0A0P5SWU1   A0A0P5ZYS8   A0A0P4VRD2   A0A0P5J9C1   A0A0N8BZ38   A0A0P5AMQ8   A0A0P6A4W0   A0A0P6GY33   A0A0N0U5E6   E2BAS1   A0A0P6A0T2   A0A0P5SSM8   A0A171B899   Q4GXG7   A0A069DQ96   A0A0P5E0W0   E9HR88   E0VAQ0   J3JWR6   A0A2Z4G629   A0A0C9R109   A0A023FHM9   A0A224XXL7   A0A0P4ZFS0   A0A023FX06   A0A0P6A0S0   A0A0P5EZX5   A0A0P5FXA1   A0A0P5IZC1   A0A1E1WZ47   A0A1E1XUL2   G3MNJ6   A0A023GI44   R4WDP8   A0A023FF65   A0A0K8TR22   A0A1W7R9S3   B7QAB5   V5HXA8   A0A0P5FQP1   V5IBV4   A0A1S4EG93  

Pubmed

22651552    28756777    26354079    17603110    26227816    22118469    + More
14668217    20798317    21282665    18362917    19820115    21347285    20075255    22516182    21719571    29403074    24508170    30249741    24845553    28049606    28648823    28797301    26830274    25576852    27129103    26334808    21292972    20566863    29889877    26131772    28503490    29209593    22216098    23691247    26369729    25765539   

EMBL

AY769287    MG992437    AXY94875.1    AK401061    BAM17683.1    GU084322    + More
ACY95355.1    AB180448    HQ424746    ADT80690.1    HM449913    ADO33048.1    KZ149967    PZC76157.1    NWSH01000980    PCG73280.1    KQ459590    KPI97218.1    AK402311    BAM18933.1    EF207955    ABS57434.1    JF265039    AEL28870.1    GDQN01010558    JAT80496.1    JTDY01008346    KOB64612.1    AGBW02003646    OWR55514.1    ODYU01009339    SOQ53698.1    AF395587    KQ461161    KPJ08011.1    RBVL01000288    RKO09694.1    GBRD01002845    JAG62976.1    AM049055    CAJ17294.1    GL438491    EFN68908.1    GECZ01005172    JAS64597.1    GECU01009363    JAS98343.1    MF061253    AUK47900.1    GL766012    EFZ15690.1    GEBQ01016815    JAT23162.1    KQ434775    KZC04087.1    KQ981625    KYN39113.1    KQ971322    EFA00786.1    GDJX01002370    JAT65566.1    ADTU01015202    FX985626    BBF97957.1    AAZX01000586    KZ288189    PBC34680.1    GDQN01004274    JAT86780.1    BT126790    AEE61752.1    GL888480    EGI60312.1    PYGN01000016    PSN57759.1    KQ980107    KYN17684.1    GEDC01017718    JAS19580.1    KK107063    QOIP01000005    EZA61166.1    RLU22827.1    KK852854    KDR14978.1    KC507341    AHB12464.1    GEFH01003427    JAP65154.1    KQ763877    OAD54656.1    EZA61183.1    NNAY01000263    OXU29643.1    NEVH01013255    PNF29264.1    KQ976574    KYM80249.1    KQ982294    KYQ58199.1    GFPF01009348    MAA20494.1    GEDV01002683    JAP85874.1    GACK01006168    JAA58866.1    GDIQ01270491    JAJ81233.1    GDIP01095316    JAM08399.1    GDIP01134211    JAL69503.1    GDIP01037865    LRGB01000106    JAM65850.1    KZS20842.1    GDKW01000997    JAI55598.1    GDIQ01204826    JAK46899.1    GDIQ01130755    JAL20971.1    GDIP01197053    JAJ26349.1    GDIP01034978    JAM68737.1    GDIQ01037590    JAN57147.1    KQ435794    KOX73982.1    GL446831    EFN87206.1    GDIP01036874    JAM66841.1    GDIP01141209    JAL62505.1    GEMB01000155    JAS02958.1    AM049056    GBGD01003102    JAC85787.1    GDIP01149662    GDIQ01188781    JAJ73740.1    JAK62944.1    GL732732    EFX65754.1    DS235012    EEB10456.1    BT127684    AEE62646.1    MG983773    AWV96608.1    GBZX01002145    JAG90595.1    GBBK01003888    GBBK01003887    GBBK01003886    JAC20594.1    GFTR01003144    JAW13282.1    GDIP01213955    JAJ09447.1    GBBL01002042    JAC25278.1    GDIP01036072    JAM67643.1    GDIQ01264758    JAJ86966.1    GDIQ01250367    JAK01358.1    GDIQ01207676    JAK44049.1    GFAC01006875    JAT92313.1    GFAA01000695    JAU02740.1    JO843447    AEO35064.1    GBBM01002716    GBBM01002715    JAC32703.1    AK417873    BAN21088.1    GBBK01003901    JAC20581.1    GDAI01001238    JAI16365.1    GFAH01000503    JAV47886.1    ABJB010041821    DS893390    EEC15787.1    GADI01006245    GANP01003421    JAA67563.1    JAB81047.1    GDIQ01251816    JAJ99908.1    GANP01014782    JAB69686.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000037510    UP000007151    UP000053240    + More
UP000276569    UP000000311    UP000076502    UP000078541    UP000007266    UP000005205    UP000005203    UP000002358    UP000242457    UP000007755    UP000245037    UP000078492    UP000053097    UP000279307    UP000027135    UP000215335    UP000235965    UP000078540    UP000075809    UP000076858    UP000053105    UP000008237    UP000000305    UP000009046    UP000001555    UP000079169   

PRIDE

Q5UAS1    Q6F442    Q962Y8    V5HXA8    V5IBV4   

Pfam

PF17135   Ribosomal_L18        + More
PF12796   Ank_2

Interpro

IPR021131   Ribosomal_L18e/L15P        + More
IPR000039   Ribosomal_L18e       
IPR036227   L18e/L15P_sf       
IPR021132   Ribosomal_L18e_CS       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR002110   Ankyrin_rpt       

SUPFAM

SSF52080   SSF52080        + More
SSF48403   SSF48403       

Gene 3D

1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

Q5UAS1   A0A3G1T1L9   I4DIE3   D1LYP8   Q6F442   E7DZ43   + More
E3UKN9   A0A2W1BSI4   A0A2A4JPE6   A0A194PW43   I4DLZ3   A7KCW6   G0ZEG1   A0A1E1W0J8   A0A0L7KMU0   A0A212FP40   A0A2H1WKY8   Q962Y8   A0A0N1IND8   A0A3B0E8B3   A0A0K8TC25   Q4GXG8   E2ACB8   A0A1B6GQA0   A0A1B6JHG4   A0A2I6HCK3   E9IUR4   A0A1B6LHH9   A0A154NWT5   A0A195FFF3   D6WDJ4   A0A1D1ZF53   A0A158NH76   A0A088AH51   A0A348G684   K7IX57   A0A2A3ESK4   A0A1E1WIF0   J3JU77   F4WZN7   A0A2P8ZMQ6   A0A195DYJ9   A0A1B6D1M4   A0A026WZL5   A0A067R6I1   A0A0X7YCF4   A0A131XBV5   A0A310SKA8   A0A026WZE1   A0A232FGF6   A0A2J7QKZ9   A0A195B7S6   A0A151XCW9   A0A224Z2Q6   A0A131Z390   L7M3F2   A0A0N8AJ71   A0A0P5VVD8   A0A0P5SWU1   A0A0P5ZYS8   A0A0P4VRD2   A0A0P5J9C1   A0A0N8BZ38   A0A0P5AMQ8   A0A0P6A4W0   A0A0P6GY33   A0A0N0U5E6   E2BAS1   A0A0P6A0T2   A0A0P5SSM8   A0A171B899   Q4GXG7   A0A069DQ96   A0A0P5E0W0   E9HR88   E0VAQ0   J3JWR6   A0A2Z4G629   A0A0C9R109   A0A023FHM9   A0A224XXL7   A0A0P4ZFS0   A0A023FX06   A0A0P6A0S0   A0A0P5EZX5   A0A0P5FXA1   A0A0P5IZC1   A0A1E1WZ47   A0A1E1XUL2   G3MNJ6   A0A023GI44   R4WDP8   A0A023FF65   A0A0K8TR22   A0A1W7R9S3   B7QAB5   V5HXA8   A0A0P5FQP1   V5IBV4   A0A1S4EG93  

PDB

4V6W     E-value=3.14444e-50,     Score=497

KEGG

692694    K02883 large subunit ribosomal protein L18e | (RefSeq) RpL18; ribosomal protein L18

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0022625   GO:0005622   GO:0006259   GO:0004813   GO:0006419   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR10934  

Subcellular location

Cytoplasm  

Length:

183

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07546

Exp number, first 60 AAs:

0.00361

Total prob of N-in:

0.21817

outside

1  -  183

 

 

Pi

175.111461

Theta

197.698762

Tajima's D

-0.430989

CLR

0.009942

CSRT

0.254937253137343

Interpretation

Uncertain