Gene

KWMTBOMO06474  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011618

Annotation

cytochrome_c1_[Bombyx_mori]

Location

Bomo_Chr11(+):8603781-8607714      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.682

CDS

ATGGCGGCCACCGTCGGTAGGATTTGTGGGGCACGTCTTTTGAAAAAATATGGTCTAGTTTGGCCTCAGGCTTGTCAGCTGTCCACCAACACTCAAGGATGGACAAAAAACAGAAAAGTGTGGCTGTCCACTTTGGGAGTGGTAGGTGGAGGTGTTGGAGCTCTACTTTTTGCACTTGAGCAGTCTGTGCAGGCATCAGGCTCTGAAGCTCACCCACCTCACAACCCTTGGAATCACAGTGGCTGGTTCAGCTCCCTGGACCACGCTAGTGTCCGTCGGGGTTATGAAGTTTACAAACAAGTCTGCAAGGCATGCCACTCTTTGCAGTATATTGCCTTCAGAAATTTGGTCAATGTCACCCATACTGAAGACGAGGCTAAGGCTGAAGCTGCTGAGGTGATGATTAAAGATGGTCCTGATGAGGAGGGCAACTACTTTGAAAGGCCTGGTAAACTTTCTGACTACCTGCCGTCTCCATACCCCAATGAAAATGCGGCTCGTGCTGCAAACAATGGTGCTTACCCACCGGACTTGTCTCTGATCTGCTCGGGACGTAAGGGCGGCGAAGATTACATCTTCGCGCTACTGACTGGTTACATGGAACCTCCTGCTGGTGTAGTGCTACGTGAGGGACAGAACTACAATCCATACTTCCCAGGAGGTGCCATCTCTATGGCGCAAGTTCTATTTGACGAAGCAGCTGAGTACAGTGACGGCACGCCGGCGACTGCGTCACAGCTCGCCAAGGATGTTGCGACTTTCTTGAAATGGTGCTCAGAACCCGAACTGGACGACCGTCGGCAGATGACCATCAAAGCTATCGGCATGTTCTCCATGCTTGCCGCCGTTGTCTACTACTACAAGCGGCACAAGTGGTCCACGCTCAAGTCTAGAAAGCTCGCCTACAAGCCCGTTTCTAAGAAATAA

Protein

MAATVGRICGARLLKKYGLVWPQACQLSTNTQGWTKNRKVWLSTLGVVGGGVGALLFALEQSVQASGSEAHPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLPSPYPNENAARAANNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSKK

Uniprot

Q1HQ62   H9JQ13   A0A2H1WKT8   A0A2A4JMJ7   A0A2W1BM72   S4PYI4   + More
A0A194PUY2   A0A0N0PAS8   A0A212FP42   I4DNC1   A0A0M4EMR6   A0A1L8E0T7   W8CAX5   A0A0K8V9T8   A0A0A1WT73   A0A0C9QQM7   A0A034V7G8   T1PGS4   A0A1I8PHV0   A0A1L8EEL9   A0A0K8TPH4   D3TPA0   A0A1B0CQM1   A0A1B0A6Y1   A0A1A9WH46   A0A1A9URN8   D6WGE2   B4KXE3   A0A1A9XB43   A0A0L0CF51   A0A067QZE2   B4LFR4   B4MM14   A0A182FEM6   B4IX14   Q7QIL1   A0A182I6Q7   B3M3R0   A0A182PIJ6   A0A1L8E0G6   A0A182JRN3   A0A1W4WZ52   B3NGA8   A0A182RJK6   U5ES96   A0A182VCE9   A0A182L3N8   T1DPL9   A0A2M3ZFV3   A0A2M4A507   A0A182Q2W3   W5JV12   B4PIS8   A0A1J1HXG9   A0A1W4UEP4   A0A182WWH7   B4HUE9   B4QRJ7   Q9VRL0   A0A182WBH9   A0A182LS49   A0A182Y2B2   A0A336MJS6   A0A069DRE3   Q16NS5   A0A182IWE6   A0A3B0J593   A0A182N9B2   A0A1L8E0C2   A0A023EP61   A0A182TGH6   E9I9W5   Q2LZL6   T1D4F7   J3JUV4   A0A146LVE2   A0A1Y1JZP8   N6UIA0   A0A224XKH4   A0A0A9VVB4   A0A171AJN8   A0A1B0FIC3   A7URV6   A0A0K8SCM5   A0A0V0G3L1   A0A084W137   A0A3B0K0M6   A0A0P4VU37   R4FNH7   A0A0P5HW16   A0A182TCR3   B0X4M6   A0A182UJW2   A0A0P5SCK1   A0A0P4YJ92   A0A1Q3FJ29   A0A2R7WJ99   A0A0P4YFU9   A0A0P4X4M4   A0A0P5BFC5  

Pubmed

19121390    28756777    23622113    26354079    22118469    22651552    + More
24495485    25830018    25348373    25315136    26369729    20353571    18362917    19820115    17994087    26108605    24845553    12364791    14747013    17210077    20966253    20920257    23761445    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    26334808    17510324    24945155    21282665    15632085    24330624    22516182    26823975    28004739    23537049    25401762    24438588    27129103   

EMBL

DQ443190    ABF51279.1    BABH01012286    ODYU01009339    SOQ53700.1    NWSH01000980    + More
PCG73277.1    KZ149967    PZC76159.1    GAIX01003233    JAA89327.1    KQ459590    KPI97216.1    KQ461161    KPJ08009.1    AGBW02003646    OWR55512.1    AK402831    BAM19411.1    CP012525    ALC43092.1    GFDF01001795    JAV12289.1    GAMC01000964    JAC05592.1    GDHF01017024    JAI35290.1    GBXI01012582    JAD01710.1    GBYB01002962    JAG72729.1    GAKP01021434    JAC37518.1    KA647350    AFP61979.1    GFDG01001637    JAV17162.1    GDAI01001562    JAI16041.1    EZ423252    ADD19528.1    AJWK01023756    KQ971329    EFA01361.1    CH933809    EDW18629.1    JRES01000577    KNC30124.1    KK852815    KDR15800.1    CH940647    EDW69291.1    CH963847    EDW73023.1    CH916366    EDV96320.1    AAAB01008807    EAA04119.4    APCN01003693    CH902618    EDV40353.1    GFDF01001897    JAV12187.1    CH954178    EDV51009.1    GANO01003345    JAB56526.1    GAMD01003234    JAA98356.1    GGFM01006614    MBW27365.1    GGFK01002499    MBW35820.1    AXCN02000558    ADMH02000413    ETN66619.1    CM000159    EDW93498.1    CVRI01000035    CRK92683.1    CH480817    EDW50570.1    CM000363    CM002912    EDX09308.1    KMY97731.1    AE014296    AY094773    AAF50785.1    AAM11126.1    AFH04308.1    AXCM01012868    UFQS01001137    UFQT01001137    SSX09184.1    SSX29093.1    GBGD01002251    JAC86638.1    CH477810    EAT36007.1    OUUW01000002    SPP76917.1    GFDF01001937    JAV12147.1    GAPW01002833    JAC10765.1    GL761846    EFZ22634.1    CH379069    EAL29491.1    GALA01000983    JAA93869.1    BT127019    AEE61981.1    GDHC01007937    JAQ10692.1    GEZM01098814    JAV53741.1    APGK01019134    KB740092    KB632429    ENN81460.1    ERL95433.1    GFTR01004862    JAW11564.1    GBHO01045451    JAF98152.1    GEMB01000987    JAS02157.1    CCAG010023484    EDO64748.1    GBRD01014952    JAG50874.1    GECL01003473    JAP02651.1    ATLV01019208    KE525264    KFB43931.1    SPP76918.1    GDKW01000442    JAI56153.1    ACPB03006889    GAHY01000568    JAA76942.1    GDIP01253023    GDIQ01224361    JAI70378.1    JAK27364.1    DS232348    EDS40443.1    GDIP01141507    JAL62207.1    GDIP01229093    JAI94308.1    GFDL01007552    JAV27493.1    KK854924    PTY19712.1    GDIP01229095    JAI94306.1    GDIP01254588    JAI68813.1    GDIP01185453    JAJ37949.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000092553    + More
UP000095301    UP000095300    UP000092461    UP000092445    UP000091820    UP000078200    UP000007266    UP000009192    UP000092443    UP000037069    UP000027135    UP000008792    UP000007798    UP000069272    UP000001070    UP000007062    UP000075840    UP000007801    UP000075885    UP000075881    UP000192223    UP000008711    UP000075900    UP000075903    UP000075882    UP000075886    UP000000673    UP000002282    UP000183832    UP000192221    UP000076407    UP000001292    UP000000304    UP000000803    UP000075920    UP000075883    UP000076408    UP000008820    UP000075880    UP000268350    UP000075884    UP000075902    UP000001819    UP000019118    UP000030742    UP000092444    UP000030765    UP000015103    UP000075901    UP000002320   

PRIDE

Q1HQ62    H9JQ13    Q9VRL0   

Pfam

PF02167   Cytochrom_C1        + More
PF08292   RNA_pol_Rbc25
PF03876   SHS2_Rpb7-N

Interpro

IPR002326   Cyt_c1        + More
IPR009056   Cyt_c-like_dom       
IPR021157   Cyt_c1_TM_anchor_C       
IPR036909   Cyt_c-like_dom_sf       
IPR013238   RNA_pol_III_Rbc25       
IPR005576   Rpb7-like_N       
IPR012340   NA-bd_OB-fold       
IPR036898   RNA_pol_Rpb7-like_N_sf       

SUPFAM

SSF81496   SSF81496        + More
SSF46626   SSF46626       
SSF50249   SSF50249       
SSF88798   SSF88798       

Gene 3D

1.10.760.10     3.30.1490.120    

ProteinModelPortal

Q1HQ62   H9JQ13   A0A2H1WKT8   A0A2A4JMJ7   A0A2W1BM72   S4PYI4   + More
A0A194PUY2   A0A0N0PAS8   A0A212FP42   I4DNC1   A0A0M4EMR6   A0A1L8E0T7   W8CAX5   A0A0K8V9T8   A0A0A1WT73   A0A0C9QQM7   A0A034V7G8   T1PGS4   A0A1I8PHV0   A0A1L8EEL9   A0A0K8TPH4   D3TPA0   A0A1B0CQM1   A0A1B0A6Y1   A0A1A9WH46   A0A1A9URN8   D6WGE2   B4KXE3   A0A1A9XB43   A0A0L0CF51   A0A067QZE2   B4LFR4   B4MM14   A0A182FEM6   B4IX14   Q7QIL1   A0A182I6Q7   B3M3R0   A0A182PIJ6   A0A1L8E0G6   A0A182JRN3   A0A1W4WZ52   B3NGA8   A0A182RJK6   U5ES96   A0A182VCE9   A0A182L3N8   T1DPL9   A0A2M3ZFV3   A0A2M4A507   A0A182Q2W3   W5JV12   B4PIS8   A0A1J1HXG9   A0A1W4UEP4   A0A182WWH7   B4HUE9   B4QRJ7   Q9VRL0   A0A182WBH9   A0A182LS49   A0A182Y2B2   A0A336MJS6   A0A069DRE3   Q16NS5   A0A182IWE6   A0A3B0J593   A0A182N9B2   A0A1L8E0C2   A0A023EP61   A0A182TGH6   E9I9W5   Q2LZL6   T1D4F7   J3JUV4   A0A146LVE2   A0A1Y1JZP8   N6UIA0   A0A224XKH4   A0A0A9VVB4   A0A171AJN8   A0A1B0FIC3   A7URV6   A0A0K8SCM5   A0A0V0G3L1   A0A084W137   A0A3B0K0M6   A0A0P4VU37   R4FNH7   A0A0P5HW16   A0A182TCR3   B0X4M6   A0A182UJW2   A0A0P5SCK1   A0A0P4YJ92   A0A1Q3FJ29   A0A2R7WJ99   A0A0P4YFU9   A0A0P4X4M4   A0A0P5BFC5  

PDB

6FO6     E-value=9.177e-80,     Score=755

KEGG

100127128    K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit | (RefSeq) cytochrome c1

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0009055   GO:0016021   GO:0020037   GO:0046872   GO:0045153   GO:0042776   GO:0006122   GO:0005750   GO:0005739   GO:0003899   GO:0006351   GO:0005524   GO:0006265   GO:0006259   GO:0004813   GO:0006419   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR10266  

Length:

308

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

29.14416

Exp number, first 60 AAs:

16.56519

Total prob of N-in:

0.84220

POSSIBLE N-term signal

sequence

inside

1  -  39

TMhelix

40  -  59

outside

60  -  308

 

 

Pi

326.656808

Theta

220.14408

Tajima's D

1.50495

CLR

0

CSRT

0.789010549472526

Interpretation

Uncertain