Gene

KWMTBOMO06454  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011870

Annotation

NADH-ubiquinone_reductase_[Bombyx_mori]

Location

Bomo_Chr11(-):7437285-7441240      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.498 Nuclear   Reliability : 1.569

CDS

ATGTTATCCAGCCTCAGGACTGGAGTACAGGGCTTGTGGCGTATATCCTCTAGGTCAATTCAGACCACAGCATCAAGGCAACATGACAGTCTATTTGTCCACCGAGACACTCCTGAGGACAACCCGAGCATTCCCTTTGAGTTCTCGCAGGCCAATCAAAAGAGAGTAGAGGCTTTGTTGGCCATTTACCCTGAAGGTCACAAGCGAGGTGCCATGATTCCTTTACTGGATCTGGCACAACGACAAAGTGGAGGCTGGCTACCTATCTCAGCTATGCACAAGGTGGCTGAGATCTTAAATCTTCCAAAAATGAGAGTTTATGAAGTAGCTACATTTTACACAATGTTCATAAGACGACCAATTGGTAAATACCATGTTCAAGTATGTACGACTACTCCTTGCTGGCTTCGAGGCTCTGATGCCATATTGAATGCAATTAAACAGGAAACAAACTGTGAAGTTGGAGGCAACAGTCCTTGTGGCAAGTTTTCTGTTTCAGAGGTTGAATGTTTGGGAGCTTGTGTGAACGCCCCAATGATACAAGTCAATGATGATTACTATGAGGACCTGTCTGTAGAAGATACAAAAGAAATTATCAGCAAATTAAAGAAGGACGAGAAGCCCAAACCTGGGCCCAGGAGTGGAAGATTCGCGTCTGAGCCTCTCGGAGGATTGACCTCGCTGACTGAAGAACCCACAGGGCCTGGCTTCGGAGTACAAGATGCACTCAAGGCGTAA

Protein

MLSSLRTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFGVQDALKA

Cofactor

[2Fe-2S] cluster

Similarity

Belongs to the ubiquitin-conjugating enzyme family.

Uniprot

Q1HPR5   A0A0M5JP45   I4DKF3   A0A194PW24   A0A3S2LKV5   A0A2A4JV02   + More
S4PYD1   A0A2W1C1C2   A0A2H1VT59   A0A0M4GZD6   A0A212ELU2   A0A1W4WPP3   J3JWN0   A0A1B0CW24   A0A0A9WND9   A0A1L8E1D1   A0A0K8SLB5   A0A0M3RMB2   A0A1B6DS62   A0A182PEA7   D6WDN3   A0A182JVG5   A0A336LZ63   B0XH03   A0A182V8P6   A0A182U159   A0A182LQR1   A0A182WZJ5   Q7QK64   A0A182HZP4   A0A182QHA0   A0A182XWH6   A0A1Q3FI13   A0A2M4BY77   E9IE30   A0A2Y9D0I5   A0A2M3Z2M1   A0A2M4AA34   A0A026VVI6   A0A182VYE7   Q1HRL6   A0A182MMX5   A0A158NFN4   U5ET61   A0A023EKT6   N6T720   A0A232FJA4   K7IUW0   B4NCF1   F4W491   B4JP16   A0A067QZQ6   A0A3Q7YQR5   A0A3Q7YQU4   B4Q2I4   T1DG39   W5J2E9   B3NWW0   A0A0K8TTI3   T1E7M7   A0A182RFT8   B4R6M1   B4IF29   Q9VX36   A0A0M4EJT8   A0A1W4VVA2   R4FN97   A0A195B4B7   Q7JYN2   A0A1I8PLM6   B3MVR9   T1P8S7   A0A2J7RQX5   B4L4B4   A0A1L8EEF0   A0A151X1P3   A0A2J7RQX4   A0A023F8J3   A0A1B6LWS8   A0A224XVC3   A0A0L0C7Q2   A0A1Y1L963   A0A195E4U8   A0A1B0AIY0   A0A0P4VHX8   A0A1A9WZA1   A0A2H8TL29   A0A1A9XJS0   A0A1B0B756   D3TLS2   A0A1B6FPB4   A0A2H4GDD2   A0A195CJL2   I3SY77   A0A1A9UHS7   A0A087ZU85   A0A1D2NKB8   A0A182IY61   A0A1B0DCT7   J9JRC0  

Pubmed

19121390    22651552    26354079    23622113    28756777    22118469    + More
22516182    25401762    26823975    18362917    19820115    20966253    12364791    14747013    17210077    25244985    21282665    24508170    30249741    17204158    17510324    21347285    24945155    23537049    28648823    20075255    17994087    21719571    24845553    17550304    20920257    23761445    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    25474469    26108605    28004739    27129103    20353571    27289101   

EMBL

BABH01012369    DQ443337    ABF51426.1    KR152652    ALD03682.1    AK401771    + More
BAM18393.1    KQ459590    KPI97198.1    RSAL01000076    RVE48864.1    NWSH01000530    PCG75855.1    GAIX01003498    JAA89062.1    KZ149896    PZC78766.1    ODYU01004287    SOQ43999.1    KR152651    ALD03681.1    AGBW02013978    OWR42462.1    BT127648    AEE62610.1    AJWK01031590    GBHO01037234    GDHC01016170    JAG06370.1    JAQ02459.1    GFDF01001779    JAV12305.1    GBRD01011905    JAG53919.1    KR152653    ALD03683.1    GEDC01008805    JAS28493.1    KQ971322    EFA01338.1    UFQT01000309    SSX23090.1    DS233082    EDS27971.1    AAAB01008799    EAA03768.4    APCN01001988    AXCN02001550    GFDL01007848    JAV27197.1    GGFJ01008895    MBW58036.1    GL762556    EFZ21177.1    GGFM01002016    MBW22767.1    GGFK01004304    MBW37625.1    KK107796    QOIP01000013    EZA47655.1    RLU15577.1    DQ440078    CH477345    ABF18111.1    EAT43013.1    AXCM01003899    ADTU01001536    GANO01002071    JAB57800.1    GAPW01003821    JAC09777.1    APGK01041327    KB740993    KB632256    ENN76014.1    ERL90761.1    NNAY01000115    OXU30826.1    AAZX01008132    CH964239    EDW82510.1    GL887491    EGI71087.1    CH916371    EDV92459.1    KK853064    KDR11879.1    GQ314439    GQ314440    GQ314441    GQ314442    GQ314443    GQ314444    GQ314445    GQ314446    GQ314447    GQ314448    GQ314449    GQ314450    GQ314451    GQ314452    GQ314453    GQ314454    ADG54238.1    ADG54239.1    ADG54240.1    ADG54241.1    ADG54242.1    ADG54243.1    ADG54244.1    ADG54245.1    ADG54246.1    ADG54247.1    ADG54248.1    ADG54249.1    ADG54250.1    ADG54251.1    ADG54252.1    ADG54253.1    GQ314423    GQ314424    GQ314425    GQ314426    GQ314427    GQ314428    GQ314429    GQ314430    GQ314431    GQ314432    GQ314433    GQ314434    GQ314436    GQ314437    GQ314438    ADG54222.1    ADG54223.1    ADG54224.1    ADG54225.1    ADG54226.1    ADG54227.1    ADG54228.1    ADG54229.1    ADG54230.1    ADG54231.1    ADG54232.1    ADG54233.1    ADG54235.1    ADG54236.1    ADG54237.1    GQ314407    GQ314408    GQ314409    GQ314410    GQ314411    GQ314412    GQ314413    GQ314414    GQ314415    GQ314416    GQ314417    GQ314418    GQ314419    GQ314420    GQ314421    GQ314422    CM000162    ADG54206.1    ADG54207.1    ADG54208.1    ADG54209.1    ADG54210.1    ADG54211.1    ADG54212.1    ADG54213.1    ADG54214.1    ADG54215.1    ADG54216.1    ADG54217.1    ADG54218.1    ADG54219.1    ADG54220.1    ADG54221.1    EDX02625.1    GAMD01002911    JAA98679.1    ADMH02002134    ETN58427.1    CH954180    EDV46507.1    GDAI01000137    JAI17466.1    GAMD01002897    JAA98693.1    CM000366    EDX18220.1    CH480832    EDW46283.1    AE014298    AAF48745.1    AHN59848.1    CP012528    ALC49478.1    ACPB03013618    GAHY01000648    JAA76862.1    KQ976625    KYM79049.1    AY075322    AAL68189.2    CH902625    EDV35064.1    KA645082    AFP59711.1    NEVH01000613    PNF43240.1    CH933810    EDW07392.1    GFDG01001846    JAV16953.1    KQ982585    KYQ54317.1    PNF43241.1    GBBI01001047    JAC17665.1    GEBQ01011877    JAT28100.1    GFTR01003974    JAW12452.1    JRES01000777    KNC28418.1    GEZM01063062    JAV69341.1    KQ979609    KYN20188.1    GDKW01002285    JAI54310.1    GFXV01002866    MBW14671.1    JXJN01009403    CCAG010007361    EZ422374    ADD18650.1    GECZ01017722    JAS52047.1    KX865085    AQM74407.1    KQ977642    KYN00921.1    BT145425    AFK45219.1    LJIJ01000017    ODN05728.1    AJVK01014222    ABLF02032299   

Proteomes

UP000005204    UP000053268    UP000283053    UP000218220    UP000007151    UP000192223    + More
UP000092461    UP000075885    UP000007266    UP000075881    UP000002320    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000075886    UP000076408    UP000069272    UP000053097    UP000279307    UP000075920    UP000008820    UP000075883    UP000005205    UP000019118    UP000030742    UP000215335    UP000002358    UP000007798    UP000007755    UP000001070    UP000027135    UP000002282    UP000000673    UP000008711    UP000075900    UP000000304    UP000001292    UP000000803    UP000092553    UP000192221    UP000015103    UP000078540    UP000095300    UP000007801    UP000095301    UP000235965    UP000009192    UP000075809    UP000037069    UP000078492    UP000092445    UP000091820    UP000092443    UP000092460    UP000092444    UP000078542    UP000078200    UP000005203    UP000094527    UP000075880    UP000092462    UP000007819   

PRIDE

Q1HPR5    Q9VX36    Q7JYN2   

Pfam

PF00179   UQ_con        + More
PF00831   Ribosomal_L29

Interpro

IPR002023   NuoE-like        + More
IPR041921   NuoE_N       
IPR042128   NuoE_dom       
IPR036249   Thioredoxin-like_sf       
IPR000608   UBQ-conjugat_E2       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR023313   UBQ-conjugating_AS       
IPR001854   Ribosomal_L29/L35       
IPR036049   Ribosomal_L29/L35_sf       
IPR018254   Ribosomal_L29_CS       

SUPFAM

SSF52833   SSF52833        + More
SSF54495   SSF54495       
SSF46561   SSF46561       

Gene 3D

1.10.10.1590     3.10.110.10    

CDD

cd03064  TRX_Fd_NuoE
cd00195  UBCc

ProteinModelPortal

Q1HPR5   A0A0M5JP45   I4DKF3   A0A194PW24   A0A3S2LKV5   A0A2A4JV02   + More
S4PYD1   A0A2W1C1C2   A0A2H1VT59   A0A0M4GZD6   A0A212ELU2   A0A1W4WPP3   J3JWN0   A0A1B0CW24   A0A0A9WND9   A0A1L8E1D1   A0A0K8SLB5   A0A0M3RMB2   A0A1B6DS62   A0A182PEA7   D6WDN3   A0A182JVG5   A0A336LZ63   B0XH03   A0A182V8P6   A0A182U159   A0A182LQR1   A0A182WZJ5   Q7QK64   A0A182HZP4   A0A182QHA0   A0A182XWH6   A0A1Q3FI13   A0A2M4BY77   E9IE30   A0A2Y9D0I5   A0A2M3Z2M1   A0A2M4AA34   A0A026VVI6   A0A182VYE7   Q1HRL6   A0A182MMX5   A0A158NFN4   U5ET61   A0A023EKT6   N6T720   A0A232FJA4   K7IUW0   B4NCF1   F4W491   B4JP16   A0A067QZQ6   A0A3Q7YQR5   A0A3Q7YQU4   B4Q2I4   T1DG39   W5J2E9   B3NWW0   A0A0K8TTI3   T1E7M7   A0A182RFT8   B4R6M1   B4IF29   Q9VX36   A0A0M4EJT8   A0A1W4VVA2   R4FN97   A0A195B4B7   Q7JYN2   A0A1I8PLM6   B3MVR9   T1P8S7   A0A2J7RQX5   B4L4B4   A0A1L8EEF0   A0A151X1P3   A0A2J7RQX4   A0A023F8J3   A0A1B6LWS8   A0A224XVC3   A0A0L0C7Q2   A0A1Y1L963   A0A195E4U8   A0A1B0AIY0   A0A0P4VHX8   A0A1A9WZA1   A0A2H8TL29   A0A1A9XJS0   A0A1B0B756   D3TLS2   A0A1B6FPB4   A0A2H4GDD2   A0A195CJL2   I3SY77   A0A1A9UHS7   A0A087ZU85   A0A1D2NKB8   A0A182IY61   A0A1B0DCT7   J9JRC0  

PDB

5GPN     E-value=4.97271e-85,     Score=799

KEGG

733123    K03943 NADH dehydrogenase (ubiquinone) flavoprotein 2 [EC:7.1.1.2 1.6.99.3] | (RefSeq) NADH-ubiquino

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0046872   GO:0016491   GO:0051537   GO:0005747   GO:0006120   GO:0005524   GO:0016740   GO:0008137   GO:0003954   GO:0005739   GO:0006412   GO:0003735   GO:0005840   GO:0000166   GO:0005388   GO:0006816   GO:0004813   GO:0006419   GO:0015923   GO:0005634   GO:0006260   GO:0055114  

Length:

245

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00324

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03236

outside

1  -  245

 

 

Pi

151.617335

Theta

134.668713

Tajima's D

0.362176

CLR

0.262369

CSRT

0.474076296185191

Interpretation

Uncertain