Gene

KWMTBOMO06447

Pre Gene Modal

BGIBMGA010729

Annotation

hypothetical_protein_AB894_15365?_partial_[Piscirickettsia_salmonis_LF-89_%3D_ATCC_VR-1361]

Location

Bomo_Chr11(+):7261241-7267487      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.885

CDS

ATGTCAAAGTCAAGTACAGGTAGAGGTAAAAATAATAAAACACGTGAACGTTCTCCGAATCCTGGACTGTACCAACAACTTCAAGCGATTGTATCTCGCCTGAATGCGTTGGAAGACAATTCAAGGTCTGGTATAGCGACTGTTGTTGAGAGGCAGCCTGCGGTGGAGTCATCGGGATCGGCGGGCAGTGCTGCGGTGCCGTGCGTGGTTCTGGCTTCTGAGCAAAGCACGACACCGCCATTGGTGCCTACGCCGGTTCCACGAGTTTCCGCTGACGATTGCGTCGCTGCCGAGGTAGCCGGTAAAATTGTAAGCGCAATTAATGAATTGAATCTGGTAAGGCCGAACCATATTTATATATCAAACTTTGATCCCGATTTAAATGATATTAATGTTTGGTGTGATGAAGTTGATCATGTACGTGTCATTTATAGGTGGACCGATAGGGAGTGCTTATCTCATATTGGTAATTGCCTTAAAGGCGATGCTCGTGTGTGGTTAAATGAATGGGTCACCAATGACCGTAGCTGGTCTAATTTTAAACGCGAGTTTAAGCCGTTGTGTCCCCGTCGGGTAGATGTTGCAAATATCCTTTTTGATGTTATGAAAACCGATTCCAACAACTATCCTACATACGCGGAATATGTTAGGCGATCTTTATTGCGTCTTCGCATAGTAAATGGACTTAGTGACGAATTAGTTTCAGCAATAGTGATCCGGGGTATCGTTGATCCACAAATTCGTGCGGCCGCTACAAACGCGAGGTTATTGCCTAACGATTTAGTTGAGTTTTTCTCCATATATGTAAAACCTACACCTCAAACAAAAACAAATCATAATACTCGTACTGTCGCTGGTCGCTTTCATAATACACAATTCTCATCACGTAAAAGAGAGCATAGTTCTAGTAGAACCGGTTGTTACGTATGTGGATCATTTGGCCATAGACAAGTGAATTGCCCTAAGCGAACGAGAAAACGTTCGCCTACTGTGAATGATAGATTCACATCTGTACCCGCTGCCAGCTCCTCTGTGCAGAAGCCTGAACCTTGTTCTTTTTGTAAAAAGCTGGGCCATAAAGTAGAGCAGTGTTTCTTTAAGCAGCGTTCTGAAGCTCGTGGAAAATCTAACGTGAATTTTTGCCGTGATACTGTAAATGACTATAGAAAAAATGATATAGCTACTGCGATCGTACAGGGTGTACCAGTCGATATCCTGATAGATAGTGGATCCACAGTCTCGCTTATGTCTGAATCAATTGTAAAACATTTTCAATGTAAACGAGTACCCTCATTTTGCGTGTTACGAGGAATTGGTGACTGTGACACTGAATCTCACTATTTTACTACTTTGACAGTTGAGTTTCCCGAAATTACGCTAGAAATAGACTTTCAAATTGTTAGTGACAAGTTCATGAATACCCCAGTCATAATCGGTACTGACGTTTTGAATCGGGAAGGTGTCACGTATATTAGGAAAAAGGGCATACAGCGCTTAACTCGGGTAGAAAAGGTTTTTACTGCTGAGACAACTGAACTTAATTCAATCCCTACCGTGAATACTTCATTAACAGGTGAAGAAAAAAATAAATTATTAGCTTTGGTACGAAAATTTTCAAAATACCTTATAACTGGTACCGCGGCCAGTACTGTTACAACTGGATCCATGCAAATTCGACTCAGCAATGAAACTCCTATTGTTTACAGACCTTACAAATTATCATTTAGCGAAAAACTTCGCGTTAGAGAAATTATTAAGGATCTTCTTGATAAAGGTGTGATTAGGGAGTCTGAATCGGAGTTCTCGAGTCCGATATTGCTAGTTAAGAAAAAGGACGGTAGTGACAGGATGTGCGTGGACTTTCGGGCTCTTAATGCGAATACTGTGAAGGATCGCTATCCATTGCCGTTAATAGACGATCACATTGACCGGTTAGGTAGCGCAAAATATTTTACAAGCCTCGATATGGCCACTGGTTTCCACCAGATTCCTTTAGCAAACGACTCCATTCACAAAACCGGCTTTGTGACACCCGAAGGTCATTTTGAATACCTTAAAATGCCCTACGGGTTAGCCAATGCCCCGGTTGTTTATCAACGTATTATAACTAATACTTTGAAAGCCTTTAGTGAGACAGGGAGGGCTTTAATATATATCGATGATGTTTTAATACCTAGTCAGACCATTGATGAAGGCCTAAATACTCTGCGTGAAATCTTTGAAACACTAACTAAGGCGGGCTTCTCGATTAATTTAAAAAAATGCAAGTTTCTTGCTAACGAAATTGAATATTTGGGCAGAACTATCAGCAATGGTCAGGTTAGGCCGAGTACGTATAAAGTAGAAGCATTGACAAGAGCCCCGAAGCCTGGTAATGTTAAACAAGCTAGACAATTTTTAGGTCTAGCGGGTTATTTTCGGCGCTATATTCCTGCATATTCGTTGCAGACAGCTTGTATTTCTAATCTGTTTCGTAAAGGTGTTGAGTTTAAATGGGGTGATGAACAGGAACAAGTACGCCAGTATATAATTACGCGTTTAACCAGTGAACCTGTCCTCAATATATTTAATCCATCATTATTAACAGAAGTACACACTGATGCTTCTTCTCGAGGGTATGGAGCTGTTTTACTTCAGACTCATGGGAATAATAATAAACGCGTGGTGGGATATTTTAGTAAAGTTACCCAAGGCGCCGAACCACGCTATAACTCCTATGAGCTGGAGACACTCGCTGTGGTCAAGGCTCTGCAGCATTTCAGGCACTACCTCATAGGTATACATTTCAAGGTAGTTACAGACTGCAACGCTTTGAAGCTTACCCAACGTAAAAAAGATTTACTACCGAGAGTCGCTCGGTGGTGGATCTACTTACAAGATTATGATTTTTCGTTAGAGTATCGTAAGGGCGCTGTGCTATCTCATGCCGACTATCTAAGTCGTAATCCTATAAATGTTTGTGAAATTGGTAGACCGCATAACTGGGCACAGATAGCACAGAGTGCTGATGAAGAAACTCGGAATTTAATACAAAAGTTACAAAACGGTGAATTAGATGAGACACGCTATGTAACTAAAAATGATGTTCTTTATTATAAATTTGATTCTGTTGGCCAACCTAGTAAATTATTATGTTATATTCCAAGAGGACATCGCCTCAGTTTGTTACGAATCTTTCATGATGAGCATCATCATATTGGAGTAGATAAGACGCTTGATCTAATATTAAACCATTTTTGGTTTCCTAGTCTAAGACAATTTGTTTGTAAATATGTACGCCATTGTATAGTATGTCTTTCACACAAAAAAATACCACGTCAACCCTTGCAGCCGATCGAGTCGTGGAAGAAACCGGACGTACCCTTTGACACGGTACATAGTGATGTCTTGGGTCCTCTTCCCGAATCGAACGGTTACAAATTTGTTGTCTTGATAATTGACGCTTATAGTAAGTTCTGTCTACTAAATCCTATGCGTAAGCAGGATGCAACAGAGTTAAAATTAGTATTTGAAAACGCTGTATCTTTATTTGGTGCACCTAGGCAGATTGTAACCGATAGGGGTAGAATGTACGAAAATAGATCATTTAGACAATGGGTATCAGACGTAGGTAGTAATTTATTCTTTATAACGCCAGAGATGCACCAGAGTAACGGTCAGGCTGAGAGATATTGCAGAACAGTTCTTAACATGATTCGTGTGGAGGTAAATTTCAGAAACGAAAATTGGTCAGAAGTTTTGTGGAAACTGCAGCTCACCCTGAACGTTACGAAACAAAAGTCCACTCAATATTCACCTTTATATTTGTTAATTGGTAGCGATGCTGTGACGCCCGTCATTCGTTCCGTTGTACGCGATGTGGCTCTAGAAGGAACAAGTGCCAACAGAGAAACCTTACGCGAGCTTGCCCGACAAAGAGCTTCTCAACTGCTGGACAAAAACCGAAAACAGCAGGACACTCGAGTAAATGAACGGCGCAAACCCCCGCGTACTTTCCATGAAAACGACGTGGTCTTCGTGCATAAGAATAGCCAATCTGTTGGAAAGCTGGATTCTGGTATGCGTGGCCCGTACAAAATAGTGCGTGCGCTGCCACATGGACGTTATGAACTGAAGCTTCTTTCTGGCTCACTTGGGAAGACCACGGAAGCTGCTGCCGTATTTATAAGTGCGTGGCACGGAGAGTGGACGCCGGATGTGTGCACCGCATTTTTCGAGTGTGATGAGAATAGCTCTGAGGAAGGTATTGTCGCCGGTCCATCACACCACCATGACGACATAGTACCTCTAGACGGACCTATTAATGCGGGCGAGGACGCTCCGCCGTCAGGAGAGGCCGTGTTAGAAGATGATGATGACATTGGAGGCGTGGCCTAA

Protein

MSKSSTGRGKNNKTRERSPNPGLYQQLQAIVSRLNALEDNSRSGIATVVERQPAVESSGSAGSAAVPCVVLASEQSTTPPLVPTPVPRVSADDCVAAEVAGKIVSAINELNLVRPNHIYISNFDPDLNDINVWCDEVDHVRVIYRWTDRECLSHIGNCLKGDARVWLNEWVTNDRSWSNFKREFKPLCPRRVDVANILFDVMKTDSNNYPTYAEYVRRSLLRLRIVNGLSDELVSAIVIRGIVDPQIRAAATNARLLPNDLVEFFSIYVKPTPQTKTNHNTRTVAGRFHNTQFSSRKREHSSSRTGCYVCGSFGHRQVNCPKRTRKRSPTVNDRFTSVPAASSSVQKPEPCSFCKKLGHKVEQCFFKQRSEARGKSNVNFCRDTVNDYRKNDIATAIVQGVPVDILIDSGSTVSLMSESIVKHFQCKRVPSFCVLRGIGDCDTESHYFTTLTVEFPEITLEIDFQIVSDKFMNTPVIIGTDVLNREGVTYIRKKGIQRLTRVEKVFTAETTELNSIPTVNTSLTGEEKNKLLALVRKFSKYLITGTAASTVTTGSMQIRLSNETPIVYRPYKLSFSEKLRVREIIKDLLDKGVIRESESEFSSPILLVKKKDGSDRMCVDFRALNANTVKDRYPLPLIDDHIDRLGSAKYFTSLDMATGFHQIPLANDSIHKTGFVTPEGHFEYLKMPYGLANAPVVYQRIITNTLKAFSETGRALIYIDDVLIPSQTIDEGLNTLREIFETLTKAGFSINLKKCKFLANEIEYLGRTISNGQVRPSTYKVEALTRAPKPGNVKQARQFLGLAGYFRRYIPAYSLQTACISNLFRKGVEFKWGDEQEQVRQYIITRLTSEPVLNIFNPSLLTEVHTDASSRGYGAVLLQTHGNNNKRVVGYFSKVTQGAEPRYNSYELETLAVVKALQHFRHYLIGIHFKVVTDCNALKLTQRKKDLLPRVARWWIYLQDYDFSLEYRKGAVLSHADYLSRNPINVCEIGRPHNWAQIAQSADEETRNLIQKLQNGELDETRYVTKNDVLYYKFDSVGQPSKLLCYIPRGHRLSLLRIFHDEHHHIGVDKTLDLILNHFWFPSLRQFVCKYVRHCIVCLSHKKIPRQPLQPIESWKKPDVPFDTVHSDVLGPLPESNGYKFVVLIIDAYSKFCLLNPMRKQDATELKLVFENAVSLFGAPRQIVTDRGRMYENRSFRQWVSDVGSNLFFITPEMHQSNGQAERYCRTVLNMIRVEVNFRNENWSEVLWKLQLTLNVTKQKSTQYSPLYLLIGSDAVTPVIRSVVRDVALEGTSANRETLRELARQRASQLLDKNRKQQDTRVNERRKPPRTFHENDVVFVHKNSQSVGKLDSGMRGPYKIVRALPHGRYELKLLSGSLGKTTEAAAVFISAWHGEWTPDVCTAFFECDENSSEEGIVAGPSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGGVA

Uniprot

A0A0A9X1Z8   A0A146M2J2   B7S8P8   A0A0J7KEC9   A0A0A9WJJ8   A0A0J7K9X8   + More
A0A0J7KLK4   J9JJ45   A0A0J7NF11   X1WPP0   A0A0J7K890   X1X5H2   A0A2S2NFQ4   A0A023EY26   A0A1Y1MFA9   A0A2H8TRV6   Q24310   A0A2S2PGQ9   W8C8Q1   J9LBS9   A0A224XHR1   A0A0A1XFE9   A0A023EZG2   A0A1W7R6G2   J9JQ65   T1PMR9   A0A023EYH9   W8B0V9   A0A0A1XB16   A0A2S2NKJ2   X1XU14   J9JZ77   A0A034VPR8   A0A2S2PFS2   A0A1W7R6L8   A0A034VLR3   A0A1W7R6H1   W8APB2   X1XU22   A0A023EYF0   A0A034VKV9   A0A023F013   A0A0A1WKC8   A0A1W7R6R7   A0A034VAM6   A0A2M4AEU2   A0A1W7R6G1   A0A2M4CKM2  

Pubmed

25401762    26823975    25474469    28004739    2464689    24495485    + More
25830018    25348373   

EMBL

GBHO01030786    JAG12818.1    GDHC01004980    JAQ13649.1    EF710649    ACE75273.1    + More
LBMM01008871    KMQ88569.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    LBMM01010976    KMQ87102.1    LBMM01005919    KMQ91096.1    ABLF02008401    ABLF02008404    KMQ91095.1    ABLF02033943    ABLF02042737    LBMM01011782    KMQ86633.1    ABLF02004401    ABLF02013544    ABLF02013550    GGMR01003388    MBY16007.1    GBBI01004477    JAC14235.1    GEZM01033083    JAV84424.1    GFXV01005120    MBW16925.1    X14037    CAA32198.1    GGMR01016004    MBY28623.1    GAMC01007326    JAB99229.1    ABLF02041876    GFTR01008753    JAW07673.1    GBXI01004632    JAD09660.1    GBBI01004551    JAC14161.1    GEHC01000888    JAV46757.1    ABLF02005846    KA649989    AFP64618.1    GBBI01004550    JAC14162.1    GAMC01015907    JAB90648.1    GBXI01005773    JAD08519.1    GGMR01005091    MBY17710.1    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    ABLF02014660    ABLF02042774    GAKP01014483    JAC44469.1    GGMR01015682    MBY28301.1    GEHC01000930    JAV46715.1    GAKP01016237    JAC42715.1    GEHC01000876    JAV46769.1    GAMC01020207    JAB86348.1    ABLF02017401    GBBI01004549    JAC14163.1    GAKP01016235    JAC42717.1    GBBI01004613    JAC14099.1    GBXI01015151    JAC99140.1    GEHC01000880    JAV46765.1    GAKP01019383    JAC39569.1    GGFK01005990    MBW39311.1    GEHC01000891    JAV46754.1    GGFL01001689    MBW65867.1   

Proteomes

UP000036403    UP000007819   

PRIDE

Q24310   

Pfam

PF00078   RVT_1        + More
PF00665   rve
PF00077   RVP
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF02037   SAP
PF17917   RT_RNaseH
PF13873   Myb_DNA-bind_5
PF03732   Retrotrans_gag
PF16064   DUF4806
PF09668   Asp_protease
PF12384   Peptidase_A2B

Interpro

IPR001878   Znf_CCHC        + More
IPR012337   RNaseH-like_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001584   Integrase_cat-core       
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR000477   RT_dom       
IPR018061   Retropepsins       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR041373   RT_RNaseH       
IPR028002   Myb_DNA-bind_5       
IPR005162   Retrotrans_gag_dom       
IPR032071   DUF4806       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR024650   Peptidase_A2B       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

ProteinModelPortal

A0A0A9X1Z8   A0A146M2J2   B7S8P8   A0A0J7KEC9   A0A0A9WJJ8   A0A0J7K9X8   + More
A0A0J7KLK4   J9JJ45   A0A0J7NF11   X1WPP0   A0A0J7K890   X1X5H2   A0A2S2NFQ4   A0A023EY26   A0A1Y1MFA9   A0A2H8TRV6   Q24310   A0A2S2PGQ9   W8C8Q1   J9LBS9   A0A224XHR1   A0A0A1XFE9   A0A023EZG2   A0A1W7R6G2   J9JQ65   T1PMR9   A0A023EYH9   W8B0V9   A0A0A1XB16   A0A2S2NKJ2   X1XU14   J9JZ77   A0A034VPR8   A0A2S2PFS2   A0A1W7R6L8   A0A034VLR3   A0A1W7R6H1   W8APB2   X1XU22   A0A023EYF0   A0A034VKV9   A0A023F013   A0A0A1WKC8   A0A1W7R6R7   A0A034VAM6   A0A2M4AEU2   A0A1W7R6G1   A0A2M4CKM2  

PDB

4OL8     E-value=3.41137e-77,     Score=739

KEGG

101738461    no KO assigned | (RefSeq) uncharacterized LOC101738461

GO

GO:0015074   GO:0003676   GO:0004190   GO:0008270   GO:0008233   GO:0003964   GO:0006508   GO:0004813   GO:0006419   GO:0015923   GO:0005634   GO:0006260  

Length:

1458

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00934999999999996

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.00038

outside

1  -  1458

 

 

Pi

116.946547

Theta

2.178379

Tajima's D

0

CLR

1.455232

CSRT

0.408479576021199

Interpretation

Uncertain