Gene

KWMTBOMO06441  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011606

Annotation

PREDICTED:_39S_ribosomal_protein_L52?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr11(+):7142061-7143317      View in EpiBrowser

Full name

39S ribosomal protein L52, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 2.931

CDS

ATGAATAATTTAACAGGAAATAAAATTTTGAAAACTATTACAGGATTGCGAAGTTTTAGTAGTTGTTCTGCATTATTTACGAAAAATTGGCGCGTCGCAAGAGGTCTTCCAGTGAACCGGAATGCTGAAGGAATTCTGACCGATGGCCCGGATTACACCTTCCTTGATGGAAGACCTACACCTTTGTTGCATAAACAAAAACTAAGGATGCAACGACAGAGGCAACTAGCTGAACAGATAGTGACATTATCCTCCGAACTGCAGTTTGCCAAAGATAGATATCAGAAAATACAAAAAGAAGAACAAGAGAAACGACAAGAAATCTTAAACAACAGACTCAAACCAAAAGGAATGATGTTGCAGAAGAAAAATTTATCATAA

Protein

MNNLTGNKILKTITGLRSFSSCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTPLLHKQKLRMQRQRQLAEQIVTLSSELQFAKDRYQKIQKEEQEKRQEILNNRLKPKGMMLQKKNLS

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.

Similarity

Belongs to the mitochondrion-specific ribosomal protein mL52 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein   Transit peptide  

Feature

chain  39S ribosomal protein L52, mitochondrial

Uniprot

I4DQ60   A0A194PV40   A0A3S2NUC7   A0A0N1PH96   A0A212FK45   A0A2H1WSW5   + More
A0A2W1BYU9   A0A0K8TSB8   A0A034WKQ0   A0A139WLY9   W8CE21   A0A0A1XLJ9   B4QER0   B4HR55   B4KPR4   A0A3B0JE72   Q290P4   B3MHS7   B4P1T5   A0A3B0JJE7   B3N9V4   B4LJH1   B4GBG0   A0A2P8XEF8   A0A1Y1NKT6   A0A1B2AJ61   Q7JWG9   A0A1W4VZ88   B4J7Z9   B4MNZ6   A0A067R738   E9GHF4   A0A0L0BYI9   A0A336M5A6   A0A2S2QUN6   A0A195B2E6   A0A158NLG0   A0A1Q3FBP3   A0A1D2MN12   F4WW92   C4WU35   A0A195CYB4   A0A1A9VPR2   A0A164H133   A0A0P5CB75   A0A0N8A6T5   A0A0P5N3A8   A0A0P5X0Q7   E9IU54   A0A195E6A2   A0A0P6INA9   A0A0N8C3U4   B0WM97   A0A0P4ZPF4   A0A0P5SMN1   A0A164THA1   A0A0P5QMT7   A0A0P5HJ44   A0A0N8C288   A0A0P5C1N3   A0A0P5D4X5   N6TH19   A0A195F1S2   A0A0P5YTY0   A0A0P6BM09   A0A0P6GUJ4   A0A0M4EW86   A0A0N7ZJG7   A0A0P4XXG0   T1PM02   A0A151XCH5   A0A226DR07   A0A1I8MI96   A0A026WYC7   A0A2R7WV15   A0A1J1IKY4   H9G4V7   A0A182IIX6   A0A0C9RAJ1   V8NKX3   A0A182M740   A0A182RQG6   A0A2J7PJH9   E2A8M7   A0A0P4VLL5   A0A182YBW9   W5JKH7   A0A2M4C3N0   A0A182FCS9   A0A2M4C3N4   A0A2M4C3K8   A0A224Y1T8  

Pubmed

22651552    26354079    22118469    28756777    26369729    25348373    + More
18362917    19820115    24495485    25830018    17994087    22936249    15632085    17550304    29403074    28004739    10731132    12537572    12537569    24845553    21292972    26108605    21347285    27289101    21719571    21282665    23537049    25315136    24508170    21881562    24297900    20798317    27129103    25244985    20920257    23761445   

EMBL

AK403947    BAM20050.1    KQ459590    KPI97187.1    RSAL01000076    RVE48855.1    + More
KQ460971    KPJ10124.1    AGBW02008140    OWR54127.1    ODYU01010820    SOQ56160.1    KZ149896    PZC78754.1    GDAI01000565    JAI17038.1    GAKP01002796    JAC56156.1    KQ971319    KYB28841.1    GAMC01000956    JAC05600.1    GBXI01002436    JAD11856.1    CM000362    CM002911    EDX06056.1    KMY92059.1    CH480816    EDW46798.1    CH933808    EDW09174.2    OUUW01000001    SPP73570.1    CM000071    CH902619    EDV36914.1    CM000157    EDW89221.1    SPP73569.1    CH954177    EDV59650.1    CH940648    EDW61539.1    CH479181    EDW32262.1    PYGN01002498    PSN30383.1    GEZM01001139    GEZM01001138    GEZM01001137    JAV98128.1    KX531389    ANY27199.1    AE013599    AY113553    CH916367    EDW02229.1    CH963848    EDW73835.1    KK852833    KDR15293.1    GL732544    EFX81184.1    JRES01001157    KNC25108.1    UFQS01000180    UFQT01000180    SSX00828.1    SSX21208.1    GGMS01012231    MBY81434.1    KQ976662    KYM78374.1    ADTU01019395    GFDL01010040    JAV25005.1    LJIJ01000841    ODM94215.1    GL888404    EGI61563.1    ABLF02040173    AK340888    AK342489    BAH71405.1    KQ977115    KYN05655.1    LRGB01013218    KZR99588.1    GDIP01176854    JAJ46548.1    GDIP01176857    JAJ46545.1    GDIQ01169735    JAK81990.1    GDIP01079065    JAM24650.1    GL765841    EFZ15907.1    KQ979568    KYN20730.1    GDIQ01029040    JAN65697.1    GDIQ01117507    JAL34219.1    DS231996    EDS30946.1    GDIP01210498    LRGB01006967    JAJ12904.1    KZS01394.1    GDIQ01093658    JAL58068.1    LRGB01001798    KZS10458.1    GDIQ01121956    JAL29770.1    GDIQ01232317    JAK19408.1    GDIQ01121955    JAL29771.1    GDIP01176856    JAJ46546.1    GDIP01176855    JAJ46547.1    APGK01026890    KB740648    KB631603    ENN79724.1    ERL84579.1    KQ981864    KYN34413.1    GDIP01053526    JAM50189.1    GDIP01027520    JAM76195.1    GDIQ01028167    JAN66570.1    CP012524    ALC42020.1    GDIP01239401    JAI84000.1    GDIP01239400    JAI84001.1    KA649812    AFP64441.1    KQ982314    KYQ58064.1    LNIX01000014    OXA47121.1    KK107063    EZA61042.1    KK855648    PTY23407.1    CVRI01000052    CRK99742.1    AAWZ02029014    GBYB01010102    JAG79869.1    AZIM01003319    ETE62323.1    AXCM01011154    NEVH01024946    PNF16505.1    GL437652    EFN70214.1    GDKW01003560    JAI53035.1    ADMH02000839    ETN64877.1    GGFJ01010795    MBW59936.1    GGFJ01010771    MBW59912.1    GGFJ01010769    MBW59910.1    GFTR01001833    JAW14593.1   

Proteomes

UP000053268    UP000283053    UP000053240    UP000007151    UP000007266    UP000000304    + More
UP000001292    UP000009192    UP000268350    UP000001819    UP000007801    UP000002282    UP000008711    UP000008792    UP000008744    UP000245037    UP000000803    UP000192221    UP000001070    UP000007798    UP000027135    UP000000305    UP000037069    UP000078540    UP000005205    UP000094527    UP000007755    UP000007819    UP000078542    UP000078200    UP000076858    UP000078492    UP000002320    UP000019118    UP000030742    UP000078541    UP000092553    UP000075809    UP000198287    UP000095301    UP000053097    UP000183832    UP000001646    UP000075880    UP000075883    UP000075900    UP000235965    UP000000311    UP000076408    UP000000673    UP000069272   

PRIDE

Q7JWG9   

Pfam

PF18699   MRPL52        + More
PF06456   Arfaptin
PF13359   DDE_Tnp_4

Interpro

IPR034596   MRPL52        + More
IPR010504   AH_dom       
IPR027267   AH/BAR_dom_sf       
IPR024114   Islet_autoAg_Ica1/Ica1-like       
IPR027806   HARBI1_dom       

SUPFAM

SSF103657   SSF103657       

Gene 3D

1.20.1270.60    

ProteinModelPortal

I4DQ60   A0A194PV40   A0A3S2NUC7   A0A0N1PH96   A0A212FK45   A0A2H1WSW5   + More
A0A2W1BYU9   A0A0K8TSB8   A0A034WKQ0   A0A139WLY9   W8CE21   A0A0A1XLJ9   B4QER0   B4HR55   B4KPR4   A0A3B0JE72   Q290P4   B3MHS7   B4P1T5   A0A3B0JJE7   B3N9V4   B4LJH1   B4GBG0   A0A2P8XEF8   A0A1Y1NKT6   A0A1B2AJ61   Q7JWG9   A0A1W4VZ88   B4J7Z9   B4MNZ6   A0A067R738   E9GHF4   A0A0L0BYI9   A0A336M5A6   A0A2S2QUN6   A0A195B2E6   A0A158NLG0   A0A1Q3FBP3   A0A1D2MN12   F4WW92   C4WU35   A0A195CYB4   A0A1A9VPR2   A0A164H133   A0A0P5CB75   A0A0N8A6T5   A0A0P5N3A8   A0A0P5X0Q7   E9IU54   A0A195E6A2   A0A0P6INA9   A0A0N8C3U4   B0WM97   A0A0P4ZPF4   A0A0P5SMN1   A0A164THA1   A0A0P5QMT7   A0A0P5HJ44   A0A0N8C288   A0A0P5C1N3   A0A0P5D4X5   N6TH19   A0A195F1S2   A0A0P5YTY0   A0A0P6BM09   A0A0P6GUJ4   A0A0M4EW86   A0A0N7ZJG7   A0A0P4XXG0   T1PM02   A0A151XCH5   A0A226DR07   A0A1I8MI96   A0A026WYC7   A0A2R7WV15   A0A1J1IKY4   H9G4V7   A0A182IIX6   A0A0C9RAJ1   V8NKX3   A0A182M740   A0A182RQG6   A0A2J7PJH9   E2A8M7   A0A0P4VLL5   A0A182YBW9   W5JKH7   A0A2M4C3N0   A0A182FCS9   A0A2M4C3N4   A0A2M4C3K8   A0A224Y1T8  

PDB

6GB2     E-value=5.34428e-06,     Score=113

KEGG

101744046    K17433 large subunit ribosomal protein L52 | (RefSeq) 39S ribosomal protein L52, mitochondrial

GO

GO:0003735   GO:0005762   GO:0032543   GO:0006412   GO:0019904   GO:0016021   GO:0004812  

PANTHER

PTHR34090   PTHR10164  

Subcellular location

Mitochondrion  

Length:

126

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01805

Exp number, first 60 AAs:

0.01805

Total prob of N-in:

0.26470

outside

1  -  126

 

 

Pi

185.903501

Theta

144.633455

Tajima's D

0.896812

CLR

0.097946

CSRT

0.631118444077796

Interpretation

Uncertain