Gene

KWMTBOMO06424

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(+):6884361-6887471      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.518

CDS

ATGAATAGTAACAGAGAAACCAGGCCCCTAGTCCCCGGCGGCCCCGCTATTCCTGTCTACGGTAGCGGTCACGGTAACGGCGGGGTAGGGGGTGCTAAGAATCCCCGGCAGAGACACGGCTACCACCCCCAAAAACGACGACCACTGGCCCTGGTAACACACAACGTGCGCACTCTGAGGCTGGACGAGAAGCTTGTCGAGTTGGAAGAAGAGATGGACAAGTTGCGCTGGGACGTCATTGGTTTATCAGAAATCCGAAGACAGGGAGAGGATACGATAACCTTGCAGTCCGGCCACTTGTTCTTTTACCGAGAGGGAGAGCAGAAGTCCCAAGGTGGTGTTGGTTTTATCGTCCACAAGTCTCTCGTGAACAACATTGTGTCCGTCGGGAGCGTCTCGAATAGGGTAGCGTGCCTGATACTCAGAATATCGAAACGATATTCATTGAAGGTCATACAGGTTTACGCTCCCACTCAGACACACCCAGACGATGAGGTAGAAGCTTTGTATGAGGACGTCAGTAGGGCCATACATAGCTCCAAAACACATTTTACTGTTGTTATGGGAGACTTTAATGCAAAGCTGGGTTGTAGAAGCAATGATGAGTTGAAAGTGGGTCAGTTTGGATATGGGCAGCGGAACTCCAGAGGACAGAGGTTGGCCGACTTTCTGGAGAAAGAAGGACTCTATATGATGAATTCTTTCTTCCAGAAGCCGCCTCACAGGAAATGGACCTGGATGAGTCCCGACGGTGTAACCAAAAATGAGATCGATTTCATCATGAGCACCAGTAGACAGATATTCAACGATGTCTCTGTGATCCATAGAGTAAAAACCGGAAGCGATCACCGAATTGTAAGGGCCATATTGAGTATTAATGTCAGATTGGAAAGATCGCGTCTGATGAAGTCCACGCTCCGACCACCAAATGCACATATTCAAAACCCCGAGAGTTTTCAACTCGAATTATCTAATCGCTTCGAAGGACTAGACAGCAAGTTATCAGTGGATGATATCTACAGCAGGCTGGTGGAAACTGTCCATACGGTAGGGTCTAAGTATTTTAAAGCCCACCGCAAAAAAAGACCTCAAAAATTATCTGACTACACCCGGAACCTCATGGCTAGCCGACGTTCTATGACACTCCAAACTTCTGAGCAAGCTGAGTCATATAGGCAGCTCAATAGACAAATCACGAAGTCCATGCGACACGACCTACGCTCCTTTAATACACAACGTATTAAGGAAACTATTGAGCGGAACCAAGGCTCCAGAGTCTTTGCAAGAGACGTGTCTATTGGGCAGAGCCACTTGACAAATCTGAAAACCGAAGATGGACGTCTAACGTCGAATAAGGCCGAGGTGCTACGGGAGATAGAAAGATTTTATGGGCAGTTATACACCTCGATATCCAATGAGCCTGCAAGCTCGGTTACAGACCCTAGAGCCAAGTTAACCCGACACTATACCGAGGATATCCCGGACATCAGCCTGTACGAGATTAGGATGGCCCTCAAACAGCTCAAGAACAACAAGGCGCCGGGCGAGGATGGAATCACCACAGAGCTTTTGAAAGCGGGCGGGACGCCGGTACTGAAAGTCCTTCAGAAGCTATTTAATTCCTCCTTGCTCAAAGGGAAAACGCCGGAGGCATGGAACAGGGGTGTTGTGGTTTTGTTTTTCAAAAAAGGCGACAAATCCTTATTGAAGAACTACAGGCCCATAACACTGCTGAGCCATGTCTATAAGCTGTTCTCGAGAGTCATCACGAACCGTCTCGAACGCAGGCTCGATGACTTTCAGCCTATCGAACAAGCCGGTTTCCGAAAAGGCTTTAGCACCATAGACCACATACATACGCTGCGGCAGATTATACAAAAGACCGAAGAGTATAATCGGCCCCTATGCCTGGCGTTTGTGGACTATGAAAAGGCCTTTGATTCTGTCGAAACTTGGGCGGTCCTTAGATCTCTCCAGCGATGCCGTATTGACTATCGGTATGTCGAGGTGTTGAAGTACTTGTATAATAACGCCACAATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCACGCTTAAAAGAGGAGTTAGACAGGGAGATGTCATATCCCCGAAACTGTTTACCGCTGCCTTAGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGATTTGGCATCAATATAAACGGCGAATACATCACACACCTTCGATTTGCTGACGATATAGTAGTCATGGCTGAGTCGCTGGAAGATTTGGGACAGATGCTCGGAGACCTCAATAGAGTCTCTCAACGAGTGGGCCTTAAAATGAATATGGATAAAACGAAAATCATGTTCAATGTCCATATTAAGCCCACCGCAGTTACCGTTGGGAACTCTGCTCTTGAAGTTGTAGACGACTATATATACCTGGGACAGGTAGTCCGATTAGGTAAGTCCAACTTTGAGAGAGAGGTCAGTAGGCGGATCCAACTCGGCTGGGCAGCGTTCGGTAACTTAAGAAATGTGTTCTCGTCCAAAATCCCTCAGTGCCTAAAGACAAAGGTGTACAACCAATGTGTGTTGCCAGTGATGACTTACGGTTCCGAGACGTGGTGCTTCACAAGGGATTTTTTCAGGAAGCTTAGTGTCGCGCAGCGAGCTATGGAGAGGGCTATGCTTGGTATTTCTCTACGAGATCGAATCAGAAATGAGGAGATCCGTAGAAGAACCAAAGTTGCTGACATAGCCCGTAGGATTAGCAAGCTGAAGTGGCAGTGGGCTGGCCACATAGCGCGAAGATCGGACGGCCGATGGGGCAGAAAGATCCTCGAGTGGAGACCACGTACTGGCAAACGCAGTGTGGGACGGCCACCTACCAGATGGACCGACGACCTGGTGAAAATTGCTGGGTCACGTTGGATGCAGGTGGCAACGGACCGGCCGCACTGGACATCAGTTGGAGAGGCCTATGTTCAGCAGTGGACAGAAGACAGGCTGAAATGA

Protein

MNSNRETRPLVPGGPAIPVYGSGHGNGGVGGAKNPRQRHGYHPQKRRPLALVTHNVRTLRLDEKLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQSGHLFFYREGEQKSQGGVGFIVHKSLVNNIVSVGSVSNRVACLILRISKRYSLKVIQVYAPTQTHPDDEVEALYEDVSRAIHSSKTHFTVVMGDFNAKLGCRSNDELKVGQFGYGQRNSRGQRLADFLEKEGLYMMNSFFQKPPHRKWTWMSPDGVTKNEIDFIMSTSRQIFNDVSVIHRVKTGSDHRIVRAILSINVRLERSRLMKSTLRPPNAHIQNPESFQLELSNRFEGLDSKLSVDDIYSRLVETVHTVGSKYFKAHRKKRPQKLSDYTRNLMASRRSMTLQTSEQAESYRQLNRQITKSMRHDLRSFNTQRIKETIERNQGSRVFARDVSIGQSHLTNLKTEDGRLTSNKAEVLREIERFYGQLYTSISNEPASSVTDPRAKLTRHYTEDIPDISLYEIRMALKQLKNNKAPGEDGITTELLKAGGTPVLKVLQKLFNSSLLKGKTPEAWNRGVVVLFFKKGDKSLLKNYRPITLLSHVYKLFSRVITNRLERRLDDFQPIEQAGFRKGFSTIDHIHTLRQIIQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCRIDYRYVEVLKYLYNNATMSVRVQEHCTKEITLKRGVRQGDVISPKLFTAALEDSFKLLEWQGFGININGEYITHLRFADDIVVMAESLEDLGQMLGDLNRVSQRVGLKMNMDKTKIMFNVHIKPTAVTVGNSALEVVDDYIYLGQVVRLGKSNFEREVSRRIQLGWAAFGNLRNVFSSKIPQCLKTKVYNQCVLPVMTYGSETWCFTRDFFRKLSVAQRAMERAMLGISLRDRIRNEEIRRRTKVADIARRISKLKWQWAGHIARRSDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLVKIAGSRWMQVATDRPHWTSVGEAYVQQWTEDRLK

Uniprot

D7F159   D7F158   D7F164   D7F157   D7F165   D7F160   + More
D7F166   A0A2H1VS24   A0A2W1BZV1   D7F177   A0A016SG46   A0A016TK11   A0A016W4R1   D7F179   A0A023EWU8   A0A023EXV2   A0A0K0FAW8   D7F176   A0A0P4VWD0   A0A2G8JFM9   D7F178   A0A016V419   A0A016S1D2   A0A2H1WF27   E3NC15   E3MH09   A0A016T7J7   A0A016S795   A0A016S5B2   A0A016WA79   A0A016VVN3   A0A0N5C0B1   A0A2H2JFN0   Q9TZX4   A0A069DX96   A0A016V6A2   A0A016V4Q8   A0A016WUN2   K7IG35   A0A016TQJ1   A0A016SPR9   A0A016W1X2   A0A016SCL7   A0A016VLP0   A0A016U6B7   A0A016WYN9   A0A016SY13   A0A016VT25   A0A016UJS4   A0A016SCZ8   A0A016U123   A0A016TX70   A0A016S7F6   A0A016WPX9   K7IBZ6   A0A016WPY4   A0A016X207   K7IBZ5   A0A016RUR3   K7IG36   A0A016WCB8   A0A016VGA0   A0A016SCT9   K7I2A3   A0A016SXL6   A0A2H2J8I4   A0A016T4C4   K7ICT2   A0A016WFS9   A0A016ULU9   A0A016TK92   K7ICT1   A0A016S6J0   A0A016V007   A0A016RV73   E3NGJ2   K7I2A2   K7H0Q9   K7H0R0   A0A016RRX8   A0A016WNH0   K7I2A1   A0A016WN14   E3N0F4   K7HDM3   A0A016WQM8   K7HDM2   A0A016SLV8   A0A016WS23   A0A016WRX9   E3NJQ7   A0A016THC6  

Pubmed

20470440    28756777    25730766    25474469    27129103    29023486    + More
8603714    9729877    26334808   

EMBL

FJ265544    ADI61812.1    FJ265543    ADI61811.1    FJ265549    ADI61817.1    + More
FJ265542    ADI61810.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    FJ265551    ADI61819.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    FJ265562    ADI61830.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    FJ265564    ADI61832.1    GBBI01004877    JAC13835.1    GBBI01004876    JAC13836.1    FJ265561    ADI61829.1    GDKW01001596    JAI54999.1    MRZV01002136    PIK34564.1    FJ265563    ADI61831.1    JARK01001354    EYC21986.1    JARK01001655    EYB84321.1    ODYU01008249    SOQ51673.1    DS268591    EFO92565.1    DS268444    EFP01729.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001621    EYB86109.1    JARK01001626    EYB85833.1    JARK01000460    EYC36749.1    JARK01001340    EYC30828.1    AF054983    AAC72298.1    GBGD01000453    JAC88436.1    JARK01001353    EYC22263.1    EYC21713.1    JARK01000109    EYC42952.1    JARK01001421    EYC04912.1    JARK01001531    EYB92324.1    EYC33297.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001344    EYC28216.1    JARK01001389    EYC10874.1    JARK01000063    EYC44387.1    JARK01001497    EYB95322.1    EYC30744.1    JARK01001372    EYC15614.1    JARK01001581    EYB88505.1    JARK01001401    EYC08686.1    JARK01001407    EYC07212.1    JARK01001612    EYB86585.1    JARK01000161    EYC41641.1    JARK01000173    EYC41342.1    JARK01000008    EYC46079.1    JARK01001711    EYB81734.1    JARK01000388    EYC37469.1    JARK01001346    EYC26445.1    JARK01001582    EYB88498.1    JARK01001500    EYB95049.1    JARK01001475    EYB97550.1    JARK01000302    EYC38674.1    JARK01001370    EYC16150.1    EYC03125.1    JARK01001618    EYB86258.1    JARK01001357    EYC20551.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    DS268655    EFO97114.1    JARK01001730    EYB81048.1    JARK01000177    EYC41210.1    EYC41209.1    DS268505    EFP13372.1    JARK01000165    EYC41537.1    JARK01001543    EYB91356.1    JARK01000146    EYC42042.1    JARK01000132    EYC42415.1    DS268752    EFP01106.1    JARK01001438    EYC02111.1   

Proteomes

UP000024635    UP000035680    UP000230750    UP000008281    UP000046392    UP000005237    + More

PRIDE

D7F159    D7F158    D7F164    D7F157    D7F165    D7F160    + More
D7F166    D7F177    D7F179    D7F176    D7F178   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF00069   Pkinase
PF00201   UDPGT

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR017441   Protein_kinase_ATP_BS       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       
IPR002213   UDP_glucos_trans       

SUPFAM

SSF56219   SSF56219        + More
SSF56112   SSF56112       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F159   D7F158   D7F164   D7F157   D7F165   D7F160   + More
D7F166   A0A2H1VS24   A0A2W1BZV1   D7F177   A0A016SG46   A0A016TK11   A0A016W4R1   D7F179   A0A023EWU8   A0A023EXV2   A0A0K0FAW8   D7F176   A0A0P4VWD0   A0A2G8JFM9   D7F178   A0A016V419   A0A016S1D2   A0A2H1WF27   E3NC15   E3MH09   A0A016T7J7   A0A016S795   A0A016S5B2   A0A016WA79   A0A016VVN3   A0A0N5C0B1   A0A2H2JFN0   Q9TZX4   A0A069DX96   A0A016V6A2   A0A016V4Q8   A0A016WUN2   K7IG35   A0A016TQJ1   A0A016SPR9   A0A016W1X2   A0A016SCL7   A0A016VLP0   A0A016U6B7   A0A016WYN9   A0A016SY13   A0A016VT25   A0A016UJS4   A0A016SCZ8   A0A016U123   A0A016TX70   A0A016S7F6   A0A016WPX9   K7IBZ6   A0A016WPY4   A0A016X207   K7IBZ5   A0A016RUR3   K7IG36   A0A016WCB8   A0A016VGA0   A0A016SCT9   K7I2A3   A0A016SXL6   A0A2H2J8I4   A0A016T4C4   K7ICT2   A0A016WFS9   A0A016ULU9   A0A016TK92   K7ICT1   A0A016S6J0   A0A016V007   A0A016RV73   E3NGJ2   K7I2A2   K7H0Q9   K7H0R0   A0A016RRX8   A0A016WNH0   K7I2A1   A0A016WN14   E3N0F4   K7HDM3   A0A016WQM8   K7HDM2   A0A016SLV8   A0A016WS23   A0A016WRX9   E3NJQ7   A0A016THC6  

PDB

6AR3     E-value=0.00168921,     Score=102

KEGG

101739909    no KO assigned | (RefSeq) uncharacterized LOC101739909

GO

GO:0004519   GO:0003964   GO:0004672   GO:0005524   GO:0016021   GO:0016758  

Length:

995

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03095

Exp number, first 60 AAs:

0.00819

Total prob of N-in:

0.00139

outside

1  -  995

 

 

Pi

228.26465

Theta

159.094727

Tajima's D

1.491051

CLR

0.429222

CSRT

0.787860606969652

Interpretation

Uncertain