Gene

KWMTBOMO06415

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_17.6_[Operophtera_brumata]

Location

Bomo_Chr11(+):6794331-6795509      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.825

CDS

ATGCCGCCGCGAAAAATACGCCAACAGACGGATGACAATAGTGATTCTGGTGATGAAAAGGTGGACGCAGTGCCCTCGCCAGCACCAGTGCTCATGTCCGGGGATCAGCTGTCCTCGCTCCTGGCCGCCTTCTCAAAGTCGCAGGCCGAGGCGAACCGACAACTCGTCGAGTCCCTGTGGGCATCGCATGGTTTGGGAAGTGGATCGAAGTTCACCACCCCGATAGTGTCACCGCCCCCGACGCCAACAAGTAACATGGCTAAATGCACCGCGCGTTTTGATGGCGTCACTCGCGATCCGGAGGCCGTTGAAGCGTTTATCGACTCTGTGGAGGTGTACAAGGAGTGTGCGTGCGTCTCTGACGATATCGCATTGCGTGGACTGCCAATGCTCATGGAAGGCGAAGCAGCCATATGGTGGAGAGGGGTCCGGAATGAAGTGTCCTCGTGGCCCGACGCTCTCAAAAGGTTACGAGCTATGTATGGTGTGCCACGCCCTGCACATAAAGTTTTTCGTGACGTGTTTTCGTCTGAGCAAGGTGATGAGCTTGCTGACAGTTTCATAGTGAGGATACGTGCTATGCTGTCCAGATTGCCGTACCAGCTACCAGAGGAAGCCAGGTTAGACATAATCTACGGTCTACTTCATAAACGGATAAGGAAAAGACTACCGAGAGATGGTGTGAGCGACATAGAAACACTCATAGAGAAGTCGCGCATGGTGGAGGAGTCACTTGTGGAGTGCACGGCTGCCCTCAACATTCCGCCGCAGCCACACAAGTCGTTACCTACGGTGTTCGGCGAACGCAGCTCCGCGCCTGACGTGACAAGTGTGAGATCGCCGAGACCTGCCGGCGCTGCCGCTGCGCTAGTGCGCGCCTCCGTTGCTGTTGCACCGTCGTCGCTACCTCAACCGTCCCCATCCCCGCGTAGTATGAAAAGCGAAACATTGTGA

Protein

MPPRKIRQQTDDNSDSGDEKVDAVPSPAPVLMSGDQLSSLLAAFSKSQAEANRQLVESLWASHGLGSGSKFTTPIVSPPPTPTSNMAKCTARFDGVTRDPEAVEAFIDSVEVYKECACVSDDIALRGLPMLMEGEAAIWWRGVRNEVSSWPDALKRLRAMYGVPRPAHKVFRDVFSSEQGDELADSFIVRIRAMLSRLPYQLPEEARLDIIYGLLHKRIRKRLPRDGVSDIETLIEKSRMVEESLVECTAALNIPPQPHKSLPTVFGERSSAPDVTSVRSPRPAGAAAALVRASVAVAPSSLPQPSPSPRSMKSETL

Uniprot

A0A2A4ITZ4   A0A2A4JSD7   A0A0L7KWD2   A0A2A4K8X8   A0A2A4IXZ6   A0A0L7KSA4   + More
A0A0L7K460   A0A2A4J1V9   A0A0L7LDZ7   A0A0L7L9J0   A0A2A4JQ27   A0A0L7KNY7   A0A2A4IUX1   A0A2A4KB30   A0A2A4J1D1   A0A0L7L2Z3   A0A2A4IY04   A0A2A4K7C7   A0A2A4JQE7   A0A194QZY2   A0A2A4J5Q0   A0A2A4J3G0   A0A1E1WBD9   A0A2W1B5D1   A0A1E1W8R6   A0A0L0CHY4  

Pubmed

26227816    26354079    28756777    26108605   

EMBL

NWSH01006416    PCG63447.1    NWSH01000724    PCG74608.1    JTDY01004939    KOB67577.1    + More
NWSH01000039    PCG80378.1    NWSH01004894    PCG64601.1    JTDY01006541    KOB65909.1    JTDY01010931    KOB57873.1    NWSH01004191    PCG65373.1    JTDY01001533    KOB73625.1    JTDY01002191    KOB71911.1    NWSH01000798    PCG74147.1    JTDY01007689    KOB65012.1    NWSH01006241    PCG63565.1    NWSH01000004    PCG81003.1    NWSH01004127    PCG65468.1    JTDY01003352    KOB69686.1    NWSH01004745    PCG64715.1    NWSH01000054    PCG80147.1    NWSH01000779    PCG74285.1    KQ460947    KPJ10535.1    NWSH01003218    PCG66743.1    NWSH01003681    PCG65942.1    GDQN01006799    JAT84255.1    KZ150309    PZC71472.1    GDQN01007676    JAT83378.1    JRES01000378    KNC31822.1   

Proteomes

UP000218220    UP000037510    UP000053240    UP000037069   

Pfam

PF00077   RVP        + More
PF00665   rve
PF17921   Integrase_H2C2
PF00078   RVT_1

Interpro

IPR001878   Znf_CCHC        + More
IPR001969   Aspartic_peptidase_AS       
IPR018061   Retropepsins       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR000477   RT_dom       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A2A4ITZ4   A0A2A4JSD7   A0A0L7KWD2   A0A2A4K8X8   A0A2A4IXZ6   A0A0L7KSA4   + More
A0A0L7K460   A0A2A4J1V9   A0A0L7LDZ7   A0A0L7L9J0   A0A2A4JQ27   A0A0L7KNY7   A0A2A4IUX1   A0A2A4KB30   A0A2A4J1D1   A0A0L7L2Z3   A0A2A4IY04   A0A2A4K7C7   A0A2A4JQE7   A0A194QZY2   A0A2A4J5Q0   A0A2A4J3G0   A0A1E1WBD9   A0A2W1B5D1   A0A1E1W8R6   A0A0L0CHY4  

KEGG

NA   

GO

GO:0008270   GO:0004190   GO:0003676   GO:0015074  

Length:

317

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00597

Exp number, first 60 AAs:

0.0006

Total prob of N-in:

0.08300

outside

1  -  317

 

 

Pi

417.183935

Theta

223.84023

Tajima's D

2.71996

CLR

0

CSRT

0.96275186240688

Interpretation

Uncertain