SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06405
Annotation
hypothetical_protein_RR46_00529_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 3.755
 

Sequence

CDS
ATGAGGGGCAAGCGCAAAAAGCGCAAAGCCGACGATCTACATCAAGATGTGGCAAGTGTCGACGACTCAGATACTTCGACCGATACTGCTGAAACTGATAAGTATACTATTTATAAATCGGAAAATTACTGCCGTCAGTATCCAGAAGATGGCGGTAATTTTGAATATATTGTAATATATGAAAGTTCCGAAACCAGGCCAATAGGCGACAGAGACCTCATGTCCCTTGGCGCTTCATTGAAACGAGGCAACAAGGGCATAAAAAGATTTAAGAGAATAAACAAATACAAAATCGGAGCTATATTCGAGCGGCCAGGGTTAGCTAATAGCGCCCTATATAATACCAAAACATTAAAGGACCTGCACCTAAAAGCATCAATTCCCGCTTTACTCACTGAAACTACTGGTGTAATTCGAAATGTTCCCACTTATATGTCGAACAAAAACATATATAATGGATTATCAAGTTCCAGAGATGTAGTTTCCGTGCGTCGACTTATGCGTCGAGGCCGCGATGAGGACGGCAAATCGTGTTTGCTGCCCACCCAAACAGTTGCCTTAACTTTCGCCTGCCCTACATTACCAGACAGTGTCGATATAGATTCATGGTACTTCGAGGTAAGCCTATACATTCCACCAGTTAGCCAATGCCTGCGTTGTCTACGCTACGGTCATATCGGCAAATTTTGTAAGAATTCGCAAAAATGCACCATCTGCGGTGAAGAACACCTATACAGAGACTGCCCTAAAGATCCCAAGGAAGCCATTTGTGTTCACTGCAGTGGCAATCACATAGCAATTTCTTCAGATTGCCCTATTAAGAAAAAAAAAATTGAAGAAAATAGAACTAAATACCAAAAAGTTGCATACGCCGATTTATTCAATGAGAAGTCTTTTCCAACATTAAACAAGTCTAAACCAACTGATAATATAAAAAACCTCCTACAGTGCGATGACTTTGTAAACTTACTTATTTCTTCTATTATCAAAATAATATCTCTCAACAAGTCTGACGAAACGCCTGTTACTTCTGCAGGCATCAAAAGCATTCTATTAGATACTTTCAGTACAAACAAAAACAGAAATAAACTTAAAACCACTTAA
Protein
MRGKRKKRKADDLHQDVASVDDSDTSTDTAETDKYTIYKSENYCRQYPEDGGNFEYIVIYESSETRPIGDRDLMSLGASLKRGNKGIKRFKRINKYKIGAIFERPGLANSALYNTKTLKDLHLKASIPALLTETTGVIRNVPTYMSNKNIYNGLSSSRDVVSVRRLMRRGRDEDGKSCLLPTQTVALTFACPTLPDSVDIDSWYFEVSLYIPPVSQCLRCLRYGHIGKFCKNSQKCTICGEEHLYRDCPKDPKEAICVHCSGNHIAISSDCPIKKKKIEENRTKYQKVAYADLFNEKSFPTLNKSKPTDNIKNLLQCDDFVNLLISSIIKIISLNKSDETPVTSAGIKSILLDTFSTNKNRNKLKTT

Summary

Pfam
PF07776   zf-AD        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR012934   Znf_AD       
IPR000477   RT_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
SUPFAM
SSF57756   SSF57756        + More
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
367
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05278
Exp number, first 60 AAs:
0
Total prob of N-in:
0.38800
outside
1  -  367
 
 

Population Genetic Test Statistics

Pi
112.171731
Theta
137.183424
Tajima's D
-0.564644
CLR
241.636049
CSRT
0.224588770561472
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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