Gene

KWMTBOMO06404  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011964

Annotation

PREDICTED:_serine_palmitoyltransferase_1-like_[Plutella_xylostella]

Location

Bomo_Chr11(-):6480249-6484960      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.559 PlasmaMembrane   Reliability : 1.473

CDS

ATGATTTATATAGATAGTCACGACATGGCCGGCTGGTGGACCTTGGTTATTGCCTTGCAAGTAGTTTTTATCACAACCTATTACTTATGGTCAAAAAAACGAACGAGGTCCCATGTTCTTCGCAGCAATGAGAAGCCAATTGAGTGGAACCCAAAACCATTGGTCGAGTATGATGTGGAAGTCGAGGAACCTCTAATAATGGGAACATTAAATGAAAATGTCTTAAATTTTGGTTCAACGAGTTTCTTATCTTTGGATAAAAATGAAACAATCATAGACAGCGCTTTGAAGGCTATGGAAAAGTATGGTGTAGGCTCGTGTGGACCTAGAGGCTTTTATGGCACTATAGATGTGCATCTTGAGTTAGAAGAACGCCTTGCCAAGTTCCTAGAGGTAGAGGAAACATGTGTATATTCATACGGATTCTCGACCATAGCTAGTGCAATTCCGTCCTATGCTAAACGAAAAGATATTGTTTTTGTGGATGAATGTGTTTGGTTTGCAATACAGAAAGGTCTTGATGCATCAAGGAGCAAAATTTGTTACTTCAAACACAATGACATGAATGACTTAGAGAGGCAGCTGTTAGAAGCTTCTGAAAAGAAAGAGTTAAACTCACGGAGAAGAGCATTCCTCATAGTTGAGGCAATTTATTTAAATACTGGAAAAATGTGCCCATTAGTGAGAGCTGTAGAATTAGCTAGAAAGTTTAAATTGAGAATAATCCTGGACGAGAGTCTCTCAATTGGTGTTCTAGGCAAACATGGTCGCGGTATTACAGAATACCTGAACATTCCTCGAGATGAAATAGATCTCATTGTTGGTTCACTGGAGCACTCGTTTGCTACAATTGGTGGCTTCTGTGCCGGTACACATTTCATCGTCGAACATCAGAGATTATCAGGACTGGGGTACTGCTTCAGTGCATCTTTACCGCCCATGTTGACTCAAGCTGCCATTTCAGCTTTAGACATTCTGGAGGAAAAACCTTCAATCATAGAAGAGCTCAATGACCGATCTAAGATGATGAATAAGGCTCTTGCTAAGTTAGACCACTACAGATACAGCGGTGATGAGATATCTCCGATCAAACATGTTTACCTCAAGGATGACCTGACTGATCGTCTCAAACATTCCTACTTAAGGAACATTGCTGCTTATTGCTTTGAGAAAGGCGTGGCCTTTGCGGTGTCCGCTTATCTGAGAGACGTCGAACATAACTGTCCCGAACCTTCCATAAGGTTGGTAGCGAGCAGGAAAATCGACAATGAAAACTTAAACTTAATATGCACGCTTTTGGAAACTGCTTACAAAGAGGTCGGACCCAAACCTGATTTGCAACCTGTTCAATAA

Protein

MIYIDSHDMAGWWTLVIALQVVFITTYYLWSKKRTRSHVLRSNEKPIEWNPKPLVEYDVEVEEPLIMGTLNENVLNFGSTSFLSLDKNETIIDSALKAMEKYGVGSCGPRGFYGTIDVHLELEERLAKFLEVEETCVYSYGFSTIASAIPSYAKRKDIVFVDECVWFAIQKGLDASRSKICYFKHNDMNDLERQLLEASEKKELNSRRRAFLIVEAIYLNTGKMCPLVRAVELARKFKLRIILDESLSIGVLGKHGRGITEYLNIPRDEIDLIVGSLEHSFATIGGFCAGTHFIVEHQRLSGLGYCFSASLPPMLTQAAISALDILEEKPSIIEELNDRSKMMNKALAKLDHYRYSGDEISPIKHVYLKDDLTDRLKHSYLRNIAAYCFEKGVAFAVSAYLRDVEHNCPEPSIRLVASRKIDNENLNLICTLLETAYKEVGPKPDLQPVQ

Uniprot

H9JR07   A0A2A4IZV7   A0A2W1BUM9   A0A3S2LZ56   A0A194Q186   A0A212FDS5   + More
A0A0N1I960   A0A0L7LLM4   A0A2M4AEN6   U5EZ28   A0A2A4J135   A0A084VTQ6   A0A2M4AD19   B4KN81   A0A182IVL8   A0A182FM29   A0A2M3Z8Z2   A0A2M3Z907   A0A2M4BMV6   A0A2M4BM06   W5JS92   A0A182W3S3   A0A2P8ZLQ1   A0A182PVF5   A0A182M648   A0A182Q428   A0A182V968   A0A182SEV7   Q7QDU8   A0A182HX88   A0A182WR98   A0A182YLX3   T1DI44   B0WFX4   A0A1L8EBN7   Q16SE7   A0A0M4EWF3   A0A1J1IWT0   B4J7A4   B4MQN3   A0A3B0JQH2   A0A182RBD6   Q28Z52   A0A182KAV4   A0A1Q3F1M9   A0A2J7Q6D6   A0A1Q3F1L0   A0A1W4UA71   A0A182TU62   A0A1Q3F1N8   A0A336LRI2   A0A067RUI4   A0A182NDK5   B4LMU7   A0A1I8M6S0   T1PFQ3   B3MDS6   A0A1L8E2F2   B4P4U4   Q6NR46   A0A0L0BSS3   B4HQ11   B3NRQ9   A0A1L8E2V2   B4QDY5   A0A1I8NRA3   E9HKN8   A0A154NZP8   B4GI96   K7IQV6   J9JZW3   A0A0P5T622   A0A0P5IFB7   A0A0P5VV98   A0A0P5KFC7   E0VK62   A0A2A3E4U3   A0A087ZPA3   A0A2H8TI93   A0A151IQA2   A0A182H2F9   A0A0P5HGR9   A0A1A9UH05   A0A2L2Y2P2   A0A0A1XAL2   A0A232F754   F4X6W7   D3TPA5   A0A0P5EM86   G1K9C4   A0A2S2PYA5   S4SCW4   A0A3Q3AIU3   E9J651   A0A3Q1ICA7   A0A0P5WH05   A0A2B4SJD6   A0A026VVM0  

Pubmed

19121390    28756777    26354079    22118469    26227816    24438588    + More
17994087    20920257    23761445    29403074    12364791    14747013    17210077    25244985    24330624    17510324    15632085    24845553    25315136    18057021    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    22936249    21292972    20075255    20566863    26483478    26561354    25830018    28648823    21719571    20353571    22974230    21282665    24508170    30249741   

EMBL

BABH01028568    BABH01028569    NWSH01004140    PCG65447.1    KZ149897    PZC78679.1    + More
RSAL01000104    RVE47375.1    KQ459590    KPI97160.1    AGBW02008998    OWR51906.1    KQ460210    KPJ16582.1    JTDY01000680    KOB76249.1    GGFK01005935    MBW39256.1    GANO01001543    JAB58328.1    PCG65446.1    ATLV01016450    KE525091    KFB41350.1    GGFK01005365    MBW38686.1    CH933808    EDW09934.1    GGFM01004242    MBW24993.1    GGFM01004231    MBW24982.1    GGFJ01004967    MBW54108.1    GGFJ01004966    MBW54107.1    ADMH02000320    ETN66981.1    PYGN01000021    PSN57428.1    AXCM01000168    AXCN02001757    AAAB01008849    EAA07184.4    APCN01005154    GALA01001156    JAA93696.1    DS231921    EDS26509.1    GFDG01002651    JAV16148.1    CH477675    EAT37378.1    CP012524    ALC42120.1    CVRI01000063    CRL04739.1    CH916367    EDW02122.1    CH963849    EDW74422.1    OUUW01000001    SPP73408.1    CM000071    EAL25762.1    GFDL01013606    JAV21439.1    NEVH01017533    PNF24145.1    GFDL01013614    JAV21431.1    GFDL01013598    JAV21447.1    UFQT01000128    SSX20580.1    KK852411    KDR24470.1    CH940648    EDW61038.1    KA647647    AFP62276.1    CH902619    EDV36461.1    KPU76228.1    GFDF01001258    JAV12826.1    CM000158    EDW90665.1    AE013599    BT010234    AAF58417.1    AAM68596.1    AAM68597.1    AAQ23552.1    JRES01001422    KNC23033.1    CH480816    EDW47674.1    CH954179    EDV56211.1    GFDF01001259    JAV12825.1    CM000362    CM002911    EDX06879.1    KMY93409.1    GL732670    EFX67688.1    KQ434786    KZC05145.1    CH479183    EDW36216.1    ABLF02030363    GDIP01132795    LRGB01000243    JAL70919.1    KZS20238.1    GDIQ01218005    JAK33720.1    GDIP01094805    JAM08910.1    GDIQ01191618    JAK60107.1    DS235239    EEB13768.1    KZ288381    PBC26514.1    GFXV01001964    MBW13769.1    KQ976780    KYN08331.1    JXUM01105183    JXUM01105184    KQ564946    KXJ71519.1    GDIQ01227757    JAK23968.1    IAAA01004203    LAA02446.1    GBXI01005993    GBXI01000640    JAD08299.1    JAD13652.1    NNAY01000802    OXU26432.1    GL888818    EGI57899.1    EZ423257    ADD19533.1    GDIP01157701    JAJ65701.1    GGMS01001293    MBY70496.1    JN315146    AFM78307.1    GL768221    EFZ11723.1    GDIQ01184425    GDIP01086702    JAK67300.1    JAM17013.1    LSMT01000045    PFX30794.1    KK107770    QOIP01000012    EZA47838.1    RLU15964.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000053240    + More
UP000037510    UP000030765    UP000009192    UP000075880    UP000069272    UP000000673    UP000075920    UP000245037    UP000075885    UP000075883    UP000075886    UP000075903    UP000075901    UP000007062    UP000075840    UP000076407    UP000076408    UP000002320    UP000008820    UP000092553    UP000183832    UP000001070    UP000007798    UP000268350    UP000075900    UP000001819    UP000075881    UP000235965    UP000192221    UP000075902    UP000027135    UP000075884    UP000008792    UP000095301    UP000007801    UP000002282    UP000000803    UP000037069    UP000001292    UP000008711    UP000000304    UP000095300    UP000000305    UP000076502    UP000008744    UP000002358    UP000007819    UP000076858    UP000009046    UP000242457    UP000005203    UP000078542    UP000069940    UP000249989    UP000078200    UP000215335    UP000007755    UP000001646    UP000264800    UP000265040    UP000225706    UP000053097    UP000279307   

PRIDE

H9JR07    Q6NR46   

Pfam

PF00155   Aminotran_1_2        + More
PF00179   UQ_con
PF17777   RL10P_insert
PF00466   Ribosomal_L10

Interpro

IPR015421   PyrdxlP-dep_Trfase_major        + More
IPR015424   PyrdxlP-dep_Trfase       
IPR004839   Aminotransferase_I/II       
IPR015422   PyrdxlP-dep_Trfase_dom1       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR000608   UBQ-conjugat_E2       
IPR040637   RL10P_insert       
IPR001790   Ribosomal_L10P       

SUPFAM

SSF53383   SSF53383        + More
SSF54495   SSF54495       

Gene 3D

3.40.640.10     3.90.1150.10     3.10.110.10    

CDD

cd00195  UBCc

ProteinModelPortal

H9JR07   A0A2A4IZV7   A0A2W1BUM9   A0A3S2LZ56   A0A194Q186   A0A212FDS5   + More
A0A0N1I960   A0A0L7LLM4   A0A2M4AEN6   U5EZ28   A0A2A4J135   A0A084VTQ6   A0A2M4AD19   B4KN81   A0A182IVL8   A0A182FM29   A0A2M3Z8Z2   A0A2M3Z907   A0A2M4BMV6   A0A2M4BM06   W5JS92   A0A182W3S3   A0A2P8ZLQ1   A0A182PVF5   A0A182M648   A0A182Q428   A0A182V968   A0A182SEV7   Q7QDU8   A0A182HX88   A0A182WR98   A0A182YLX3   T1DI44   B0WFX4   A0A1L8EBN7   Q16SE7   A0A0M4EWF3   A0A1J1IWT0   B4J7A4   B4MQN3   A0A3B0JQH2   A0A182RBD6   Q28Z52   A0A182KAV4   A0A1Q3F1M9   A0A2J7Q6D6   A0A1Q3F1L0   A0A1W4UA71   A0A182TU62   A0A1Q3F1N8   A0A336LRI2   A0A067RUI4   A0A182NDK5   B4LMU7   A0A1I8M6S0   T1PFQ3   B3MDS6   A0A1L8E2F2   B4P4U4   Q6NR46   A0A0L0BSS3   B4HQ11   B3NRQ9   A0A1L8E2V2   B4QDY5   A0A1I8NRA3   E9HKN8   A0A154NZP8   B4GI96   K7IQV6   J9JZW3   A0A0P5T622   A0A0P5IFB7   A0A0P5VV98   A0A0P5KFC7   E0VK62   A0A2A3E4U3   A0A087ZPA3   A0A2H8TI93   A0A151IQA2   A0A182H2F9   A0A0P5HGR9   A0A1A9UH05   A0A2L2Y2P2   A0A0A1XAL2   A0A232F754   F4X6W7   D3TPA5   A0A0P5EM86   G1K9C4   A0A2S2PYA5   S4SCW4   A0A3Q3AIU3   E9J651   A0A3Q1ICA7   A0A0P5WH05   A0A2B4SJD6   A0A026VVM0  

PDB

3A2B     E-value=5.03215e-37,     Score=388

KEGG

101743445    K00654 serine palmitoyltransferase [EC:2.3.1.50] | (RefSeq) serine palmitoyltransferase 1

PATHWAY

00600    Sphingolipid metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0030170   GO:0016021   GO:0003824   GO:0009058   GO:0016740   GO:0090154   GO:0008483   GO:0016874   GO:0004758   GO:0042254   GO:0035339   GO:0046513   GO:1904504   GO:1904649   GO:0046511   GO:0046512   GO:0006686   GO:0051536   GO:0043412   GO:0015074   GO:0015923   GO:0005634   GO:0006260  

Length:

450

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

30.28385

Exp number, first 60 AAs:

21.48295

Total prob of N-in:

0.39366

POSSIBLE N-term signal

sequence

inside

1  -  8

TMhelix

9  -  31

outside

32  -  450

 

 

Pi

179.058717

Theta

180.279825

Tajima's D

0.234911

CLR

0.343673

CSRT

0.43832808359582

Interpretation

Uncertain