Gene

KWMTBOMO06401  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011936

Annotation

H+_transporting_ATP_synthase_subunit_d_[Bombyx_mori]

Location

Bomo_Chr11(+):6461301-6462664      View in EpiBrowser

Full name

ATP synthase subunit d, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.221 Mitochondrial   Reliability : 1.055

CDS

ATGGCGAAAAGAATATCACAAAGTGCCGTAAACTGGGCTGCTCTCGCTGAGAGAGTTCCCGCCGAACAAAAGGCGCACCTTGCTGCTTTCAAAATAAAATCCGATAATTATCTCCGAAGGGTACTAGCCAATCCACCTGAACCGCCCAAGATTAACTGGGCTGTGTACAAACAGGCTGTACCTATTCCTGGAATGGTAGACACATTCCAGAAGCAATATGAAGCTCTAAAAATTCCATACCCAGCTGACACTCAGACGGCACTTGTAGAATCGCAGTGGAATCAAGTCAAGAATGCCATCGACGCGTTTATCCAAGAGTCCAATGCCAACATTGCATCCTACCAAAAAGAAATCAATGCAACCAAGGCCCTACTGCCGTATGACCAGATGACCATGGAAGACTTCTATGATGCCCATCCTGACCTGGCCCTTGATCCCATCAAGAAGCCAACCTTCTGGCCACACACTCCGGAAGAGCAGCTCGACTATGTCGACCCAGAGAAACAAGCTCAGCCTACTACAGCTGCAGCTGCACACTAA

Protein

MAKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVDPEKQAQPTTAAAAH

Description

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.

Subunit

F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(0) seems to have nine subunits: a, b, c, d, e, f, g, F6 and 8 (or A6L).

Similarity

Belongs to the ATPase d subunit family.

Keywords

Complete proteome   Hydrogen ion transport   Ion transport   Membrane   Mitochondrion   Mitochondrion inner membrane   Reference proteome   Transport  

Feature

chain  ATP synthase subunit d, mitochondrial

Uniprot

Q1HPP3   A0A2H1W3Y3   A0A2A4J1Q8   A0A2W1BUC6   A0A194PV08   I4DJX5   + More
A0A0N0PDJ1   A0A212FDT8   I4DN27   D5LN47   S4PMR7   A0A0L7LM20   A0A3G1T1F9   A0A0L0CLH8   A0A1I8Q4G9   A0A1B0CRW0   T1P7L3   A0A1L8EER5   A0A0K8TEV4   A0A0A9WLZ3   Q1HR21   A0A182N288   A0A182UHJ8   A0A182URL0   A0A182X5Q0   B0WW90   A0A1L8E025   A0A182MP73   A0A182RW42   A0A182KL05   Q7QHC8   A0A2M4A6H1   A0A182FW37   A0A2M4C1B7   A0A182QWM6   A0A034WQQ3   A0A0C9R8N2   D3TN18   A0A2M4A631   A0A069DPS4   A0A0P4VTX2   R4FKB2   A0A182JWZ9   W8BZX3   A0A1B0BJQ8   A0A1Q3FKP2   A0A0K8VFS3   A0A182HW97   A0A2M3YZW3   T1DN10   W5JJY9   B3M1P3   A0A0K8TNX3   A0A182YB01   B4KBB6   A0A2P8XM36   A0A182WDL3   A0A182JHE0   A0A0A1WV14   U5EWQ5   A0A0A1XPL2   A0A0B4LHL7   Q24251   A0A0M4F425   A0A023EHZ0   Q6XIZ3   A0A1A9X1A0   T1E341   B3P374   A0A084WM03   A0A2J7QB91   A0A1B0G0R6   B5DTE3   A0A224XZ38   B4JSF7   A0A067R370   B4MB46   B4ILU9   B4G669   A0A336MJV1   A0A3B0KM59   A0A1W4UB64   N6TZ51   A0A182NZP8   J3JUX8   A0A1J1HWE5   H9J601   Q2XYK8   B4NHY2   Q2XYK7   D6WH57   Q2XYL0   A0A2R7VXW2   Q2XYL1   A0A023F7P5   A0A1B6DLU4   B4QTH4   A0A1W4W3M6   A0A1B0G6D6   A0A232ETU0  

Pubmed

19121390    28756777    26354079    22651552    22118469    23622113    + More
26227816    26108605    25315136    26823975    25401762    17204158    17510324    20966253    12364791    14747013    17210077    25348373    20353571    26334808    27129103    24495485    20920257    23761445    17994087    18057021    26369729    25244985    29403074    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    10071211    12537569    16120803    24945155    14525923    17550304    24330624    24438588    15632085    24845553    23537049    22516182    18362917    19820115    25474469    28648823   

EMBL

BABH01028570    DQ443359    ABF51448.1    ODYU01006180    SOQ47809.1    NWSH01004140    + More
PCG65454.1    KZ149897    PZC78682.1    KQ459590    KPI97157.1    AK401593    BAM18215.1    KQ460210    KPJ16587.1    AGBW02008998    OWR51902.1    AK402695    BAM19317.1    GU947650    JN410822    ADF43048.1    AEP25398.1    GAIX01003415    JAA89145.1    JTDY01000680    KOB76246.1    MG992383    AXY94821.1    JRES01000321    KNC32299.1    AJWK01025352    KA644576    AFP59205.1    GFDG01001608    JAV17191.1    GBRD01001807    GDHC01001054    JAG64014.1    JAQ17575.1    GBHO01034142    JAG09462.1    DQ440273    CH477304    ABF18306.1    EAT44176.1    DS232140    EDS35922.1    GFDF01001976    JAV12108.1    AXCM01004806    AAAB01008816    EAA05107.3    GGFK01003034    MBW36355.1    GGFJ01009952    MBW59093.1    AXCN02001731    GAKP01001983    JAC56969.1    GBYB01009207    JAG78974.1    EZ422820    ADD19096.1    GGFK01002943    MBW36264.1    GBGD01003198    JAC85691.1    GDKW01001150    JAI55445.1    ACPB03001919    GAHY01001933    JAA75577.1    GAMC01004287    JAC02269.1    JXJN01015487    GFDL01006999    JAV28046.1    GDHF01014555    JAI37759.1    APCN01001478    GGFM01001052    MBW21803.1    GAMD01003260    JAA98330.1    ADMH02000909    GGFL01004481    ETN64697.1    MBW68659.1    CH902617    EDV44373.1    KPU80816.1    GDAI01001534    JAI16069.1    CH933806    EDW16844.2    PYGN01001739    PSN33066.1    GBXI01011590    JAD02702.1    GANO01001313    JAB58558.1    GBXI01001420    JAD12872.1    AE014297    AHN57400.1    X99667    AY071751    BT088850    DQ138650    CP012526    ALC46070.1    GAPW01004906    JAC08692.1    AY231686    CM000160    AAR09709.1    EDW95985.1    KRK02824.1    GALA01000715    JAA94137.1    CH954181    EDV48526.1    ATLV01024337    KE525351    KFB51247.1    NEVH01016301    PNF25858.1    CCAG010021817    CH475858    EDY71151.1    GFTR01002903    JAW13523.1    CH916373    EDV94697.1    KK852729    KDR17560.1    CH940656    EDW58317.1    KRF78225.1    CH480892    EDW55425.1    CH479179    EDW23828.1    UFQS01001170    UFQS01002160    UFQT01001170    UFQT01002160    SSX09357.1    SSX13389.1    SSX29259.1    OUUW01000013    SPP87659.1    APGK01049756    KB741156    KB631941    ENN73621.1    ERL87374.1    BT127043    AEE62005.1    CVRI01000021    CRK91684.1    BABH01029922    DQ138653    DQ138654    ABA86259.1    ABA86260.1    CH964272    EDW83632.1    KRF99843.1    DQ138655    ABA86261.1    KQ971330    EFA01349.1    DQ138652    ABA86258.1    KK854156    PTY12302.1    DQ138651    ABA86257.1    GBBI01001459    JAC17253.1    GEDC01010653    JAS26645.1    CM000364    EDX12376.1    CCAG010011188    NNAY01002225    OXU21773.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000037069    UP000095300    UP000092461    UP000095301    UP000008820    UP000075884    UP000075902    UP000075903    UP000076407    UP000002320    UP000075883    UP000075900    UP000075882    UP000007062    UP000069272    UP000075886    UP000015103    UP000075881    UP000092460    UP000075840    UP000000673    UP000007801    UP000076408    UP000009192    UP000245037    UP000075920    UP000075880    UP000000803    UP000092553    UP000002282    UP000091820    UP000008711    UP000030765    UP000235965    UP000092444    UP000001819    UP000001070    UP000027135    UP000008792    UP000001292    UP000008744    UP000268350    UP000192221    UP000019118    UP000030742    UP000075885    UP000183832    UP000007798    UP000007266    UP000000304    UP000192223    UP000215335   

PRIDE

Q1HPP3    Q24251    H9J601   

Pfam

PF05873   Mt_ATP-synt_D        + More
PF00397   WW

Interpro

IPR008689   ATP_synth_F0_dsu_mt        + More
IPR036228   ATP_synth_F0_dsu_sf_mt       
IPR030030   Sav       
IPR001202   WW_dom       
IPR011524   SARAH_dom       
IPR036020   WW_dom_sf       

SUPFAM

SSF161065   SSF161065        + More
SSF51045   SSF51045       

Gene 3D

1.20.58.880    

CDD

cd00201  WW

ProteinModelPortal

Q1HPP3   A0A2H1W3Y3   A0A2A4J1Q8   A0A2W1BUC6   A0A194PV08   I4DJX5   + More
A0A0N0PDJ1   A0A212FDT8   I4DN27   D5LN47   S4PMR7   A0A0L7LM20   A0A3G1T1F9   A0A0L0CLH8   A0A1I8Q4G9   A0A1B0CRW0   T1P7L3   A0A1L8EER5   A0A0K8TEV4   A0A0A9WLZ3   Q1HR21   A0A182N288   A0A182UHJ8   A0A182URL0   A0A182X5Q0   B0WW90   A0A1L8E025   A0A182MP73   A0A182RW42   A0A182KL05   Q7QHC8   A0A2M4A6H1   A0A182FW37   A0A2M4C1B7   A0A182QWM6   A0A034WQQ3   A0A0C9R8N2   D3TN18   A0A2M4A631   A0A069DPS4   A0A0P4VTX2   R4FKB2   A0A182JWZ9   W8BZX3   A0A1B0BJQ8   A0A1Q3FKP2   A0A0K8VFS3   A0A182HW97   A0A2M3YZW3   T1DN10   W5JJY9   B3M1P3   A0A0K8TNX3   A0A182YB01   B4KBB6   A0A2P8XM36   A0A182WDL3   A0A182JHE0   A0A0A1WV14   U5EWQ5   A0A0A1XPL2   A0A0B4LHL7   Q24251   A0A0M4F425   A0A023EHZ0   Q6XIZ3   A0A1A9X1A0   T1E341   B3P374   A0A084WM03   A0A2J7QB91   A0A1B0G0R6   B5DTE3   A0A224XZ38   B4JSF7   A0A067R370   B4MB46   B4ILU9   B4G669   A0A336MJV1   A0A3B0KM59   A0A1W4UB64   N6TZ51   A0A182NZP8   J3JUX8   A0A1J1HWE5   H9J601   Q2XYK8   B4NHY2   Q2XYK7   D6WH57   Q2XYL0   A0A2R7VXW2   Q2XYL1   A0A023F7P5   A0A1B6DLU4   B4QTH4   A0A1W4W3M6   A0A1B0G6D6   A0A232ETU0  

PDB

2CLY     E-value=6.67502e-23,     Score=261

KEGG

100101181    K02138 F-type H+-transporting ATPase subunit d | (RefSeq) H+ transporting ATP synthase subunit d

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0015078   GO:0015986   GO:0000276   GO:0005743   GO:0000274   GO:0099132   GO:0008340   GO:0006979   GO:0051881   GO:0032007   GO:0070373   GO:0016787   GO:0046034   GO:1902600   GO:0005739   GO:0007165   GO:0051536   GO:0016740   GO:0043412   GO:0015074   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR12700   PTHR10316:SF70  

Subcellular location

Mitochondrion inner membrane  
Mitochondrion  

Length:

179

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.27203

outside

1  -  179

 

 

Pi

25.48192

Theta

151.874194

Tajima's D

-0.553458

CLR

23.296078

CSRT

0.232738363081846

Interpretation

Uncertain