Gene

KWMTBOMO06396

Pre Gene Modal

BGIBMGA011931

Annotation

PREDICTED:_netrin-B_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(+):6270161-6281363      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.841 Nuclear   Reliability : 1.948

CDS

ATGGCGGAATGCTCGTGCAATGGCCACGCTCGGCGGTGCCGGTTCAACATGGAGCTTTACAAGCTGTCGGGCCGCGACAGTGGCGGCGTATGCCTTAAATGCCGGCATTACACGGCCGGCAGGCATTGCCATTACTGCCGGGAAGGATACTACAGGGATCCTACCAAGCCCATCACTCACAAGAAGGCTTGCAAACCCTGCGACTGTCACCCTGTCGGAGCCAGTGGGAAGACCTGCAATCAGACGAGCGGTCAGTGTCCTTGCAAGGATGGCGTGACAGGGACCACGTGCAATAGATGCGCCAAAGGATACCAACAGTCCAGGAGTCATATTGCGCCTTGCATACGTATACCTCGTGTGGTGACTGCTGTACAGGCTATGGAAGCCGAAGACAACGAGCCGGGCCGCGCAGCGGACCAGTGCGGTCGGTGTCGCGTCGGCGCCCGCACGCTAAACCTGAACAAGTTCTGCAGCCGAGACTACGTCATAATGGGCAAGGTGGTAGGTCGCGAGGCGAGCGCGGCTGGCGGCGCCTGGTCCCGTCTGGCGCTCAACGTGCAGGCGGTGTACAAGCGCGCTCCCCGCAGCCGGCTGCGACGGGGCGCCGCCGCGCTCTTCGTGCGCGCCCGGGACCTCGCCTGCAAGTGTCCTAAACTAAAGATCAACAAATCATACCTAATCCTAGGAGTGGAAAAAGAAGGTCTTCAAGCTGGCTTACCGGGCTTAGTGGTGGGAGAGAGAACCCTTCTCCTTGAGTGGCGCGACGACTGGCACCGACGCATCCGTCGTCTTCAGCGTCGCGCGATCAACTGCCACTAG

Protein

MAECSCNGHARRCRFNMELYKLSGRDSGGVCLKCRHYTAGRHCHYCREGYYRDPTKPITHKKACKPCDCHPVGASGKTCNQTSGQCPCKDGVTGTTCNRCAKGYQQSRSHIAPCIRIPRVVTAVQAMEAEDNEPGRAADQCGRCRVGARTLNLNKFCSRDYVIMGKVVGREASAAGGAWSRLALNVQAVYKRAPRSRLRRGAAALFVRARDLACKCPKLKINKSYLILGVEKEGLQAGLPGLVVGERTLLLEWRDDWHRRIRRLQRRAINCH

Uniprot

H9JQX5   A0A2W1BZJ7   A0A194PV02   A0A0N1PHN9   A0A3S2TJ02   A0A212FDR4   + More
A0A1B6CV77   A0A1B6J0X0   A0A0L7LU79   A0A1B6L4V9   A0A158NJF8   A0A067RDY5   A0A0C9PLN5   A0A1Y1M261   A0A154PNU8   A0A1B6EZB2   E2BUA0   A0A1Y1M907   D7EHQ2   A0A0A9Z2X5   E0VYV4   A0A1Y1M443   A0A0P5JJJ3   A0A2S2QES5   A0A146MHX1   A0A0P4XQH6   A0A0P5RCR6   A0A0P6HWB0   A0A0N7ZFE1   A0A0M9ABD1   A0A2S2P501   A0A2H8TME8   A0A182MGN3   E9GZG2   A0A226ECW7   A0A182PN48   A0A1B0C9C2   A0A182IAE8   A0A1D2MQP3   A0A182JHX5   A0A182WTN4   A0A182V2Z4   T1K3U5   T1DI33   A0A3L8DF10   A0A182QSJ5   A0A182WQJ7   A0A182S4K3   A0A2P1DV55   A0A182NZ13   K7J7Q0   Q0IGC3   A0A1I8N3U9   A0A0P5DCN6   L5K039   G7PTM1   U6D9U2   A0A1Q3FV05   A0A1Q3FV72   W5UHM1   Q0IGC8   V9KAW1   W5KQW5   V9K9V4   A0A146WJ74   A0A1L8EV13   A0A3Q1INQ5   G1KUB3   A0A2U9BQD3   O42140   A0A0B5JPZ7   A0A1W5A9T8   F7CBX5   A0A3B4WFQ0   A0A3B4VCM8   A0A3B3XTX2   A0A3Q2YN80   A0A1S3PS44   A0A3B5B6R7   A0A3B3W2Z4   A0A3Q1B3Y3   F7G4D6   A0A3P8XKC4   G3Q6U6   A0A2R9AA25   K9ITB3   B4JJN0   B3N1K3   Q95SP5   O57339   M3ZWP7   A0A0M5JDR0   L8HV67   A0A2K5ZVT1   A0A2K6SXG2   B4GY45   A0A3B1KE85   A0A1S3L5W0   A0A3P8RME6  

Pubmed

19121390    28756777    26354079    22118469    26227816    21347285    + More
24845553    28004739    20798317    18362917    19820115    25401762    20566863    26823975    21292972    27289101    30249741    29236686    20075255    17510324    25315136    23258410    22002653    23127152    24402279    25329095    27762356    9268507    23594743    26190107    20431018    17495919    25069045    22722832    17994087    9427245    23542700    22751099   

EMBL

BABH01028583    BABH01028584    KZ149897    PZC78687.1    KQ459590    KPI97152.1    + More
KQ460210    KPJ16592.1    RSAL01000104    RVE47366.1    AGBW02008998    OWR51896.1    GEDC01020017    JAS17281.1    GECU01019739    GECU01014871    JAS87967.1    JAS92835.1    JTDY01000076    KOB79002.1    GEBQ01021277    JAT18700.1    ADTU01001922    ADTU01001923    ADTU01001924    ADTU01001925    ADTU01001926    ADTU01001927    ADTU01001928    ADTU01001929    ADTU01001930    ADTU01001931    KK852567    KDR21223.1    GBYB01001992    GBYB01001993    JAG71759.1    JAG71760.1    GEZM01042509    JAV79809.1    KQ435005    KZC13407.1    GECZ01026511    JAS43258.1    GL450619    EFN80728.1    GEZM01042511    JAV79807.1    KQ973114    EFA12173.2    GBHO01005368    JAG38236.1    DS235848    EEB18560.1    GEZM01042510    JAV79808.1    GDIQ01204138    JAK47587.1    GGMS01007042    MBY76245.1    GDHC01000349    JAQ18280.1    GDIP01240540    JAI82861.1    GDIQ01122073    JAL29653.1    GDIQ01021178    JAN73559.1    GDIP01250809    JAI72592.1    KQ435692    KOX81075.1    GGMR01011803    MBY24422.1    GFXV01003306    MBW15111.1    AXCM01009261    GL732577    EFX75164.1    LNIX01000004    OXA55423.1    AJWK01002192    AJWK01002193    AJWK01002194    APCN01001217    LJIJ01000678    ODM95397.1    CAEY01001560    GAMD01002071    JAA99519.1    QOIP01000009    RLU18984.1    AXCN02001353    KY709722    AVK72273.1    AAZX01003032    AAZX01003033    AAZX01003034    AAZX01003035    AAZX01003041    AAZX01006162    AAZX01007365    AAZX01009310    AAZX01010627    AAZX01012590    CH477260    EAT45716.1    GDIP01163283    JAJ60119.1    KB031076    ELK03863.1    CM001291    EHH57720.1    HAAF01007547    CCP79371.1    GFDL01003606    JAV31439.1    GFDL01003607    JAV31438.1    JT410717    AHH39167.1    EAT45711.1    JW862400    AFO94917.1    JW862119    AFO94636.1    GCES01057181    JAR29142.1    CM004482    OCT63109.1    CP026250    AWP05836.1    AL928622    BX255899    AF002717    CU638812    AAC60252.1    CAP71961.1    KM655584    AJG05930.1    AAMC01064985    AAMC01064986    AAMC01064987    AAMC01064988    AAMC01064989    AAMC01064990    AAMC01064991    AJFE02061783    AJFE02061784    AJFE02061785    AJFE02061786    AJFE02061787    AJFE02061788    AJFE02061789    AJFE02061790    AJFE02061791    AJFE02061792    GABZ01001230    JAA52295.1    CH916370    EDV99782.1    CH902660    EDV30112.2    AY060671    AAL28219.1    AF033341    AAB87983.1    CP012528    ALC49294.1    JH882969    ELR47748.1    CH479196    EDW27672.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000283053    UP000007151    UP000037510    + More
UP000005205    UP000027135    UP000076502    UP000008237    UP000007266    UP000009046    UP000053105    UP000075883    UP000000305    UP000198287    UP000075885    UP000092461    UP000075840    UP000094527    UP000075880    UP000076407    UP000075903    UP000015104    UP000279307    UP000075886    UP000075920    UP000075900    UP000075884    UP000002358    UP000008820    UP000095301    UP000010552    UP000009130    UP000221080    UP000018467    UP000186698    UP000265040    UP000001646    UP000246464    UP000000437    UP000192224    UP000008143    UP000261360    UP000261420    UP000261480    UP000264820    UP000087266    UP000261400    UP000261500    UP000257160    UP000002280    UP000265140    UP000007635    UP000240080    UP000001070    UP000007801    UP000002852    UP000092553    UP000233140    UP000233220    UP000008744    UP000265080   

PRIDE

H9JQX5    Q95SP5   

Pfam

PF01759   NTR        + More
PF00053   Laminin_EGF
PF00055   Laminin_N

Interpro

IPR002049   Laminin_EGF        + More
IPR018933   Netrin_module_non-TIMP       
IPR001134   Netrin_domain       
IPR008993   TIMP-like_OB-fold       
IPR038684   Laminin_N_sf       
IPR008211   Laminin_N       
IPR013032   EGF-like_CS       
IPR008979   Galactose-bd-like_sf       

SUPFAM

SSF50242   SSF50242        + More
SSF49785   SSF49785       

Gene 3D

2.60.120.1490    

ProteinModelPortal

H9JQX5   A0A2W1BZJ7   A0A194PV02   A0A0N1PHN9   A0A3S2TJ02   A0A212FDR4   + More
A0A1B6CV77   A0A1B6J0X0   A0A0L7LU79   A0A1B6L4V9   A0A158NJF8   A0A067RDY5   A0A0C9PLN5   A0A1Y1M261   A0A154PNU8   A0A1B6EZB2   E2BUA0   A0A1Y1M907   D7EHQ2   A0A0A9Z2X5   E0VYV4   A0A1Y1M443   A0A0P5JJJ3   A0A2S2QES5   A0A146MHX1   A0A0P4XQH6   A0A0P5RCR6   A0A0P6HWB0   A0A0N7ZFE1   A0A0M9ABD1   A0A2S2P501   A0A2H8TME8   A0A182MGN3   E9GZG2   A0A226ECW7   A0A182PN48   A0A1B0C9C2   A0A182IAE8   A0A1D2MQP3   A0A182JHX5   A0A182WTN4   A0A182V2Z4   T1K3U5   T1DI33   A0A3L8DF10   A0A182QSJ5   A0A182WQJ7   A0A182S4K3   A0A2P1DV55   A0A182NZ13   K7J7Q0   Q0IGC3   A0A1I8N3U9   A0A0P5DCN6   L5K039   G7PTM1   U6D9U2   A0A1Q3FV05   A0A1Q3FV72   W5UHM1   Q0IGC8   V9KAW1   W5KQW5   V9K9V4   A0A146WJ74   A0A1L8EV13   A0A3Q1INQ5   G1KUB3   A0A2U9BQD3   O42140   A0A0B5JPZ7   A0A1W5A9T8   F7CBX5   A0A3B4WFQ0   A0A3B4VCM8   A0A3B3XTX2   A0A3Q2YN80   A0A1S3PS44   A0A3B5B6R7   A0A3B3W2Z4   A0A3Q1B3Y3   F7G4D6   A0A3P8XKC4   G3Q6U6   A0A2R9AA25   K9ITB3   B4JJN0   B3N1K3   Q95SP5   O57339   M3ZWP7   A0A0M5JDR0   L8HV67   A0A2K5ZVT1   A0A2K6SXG2   B4GY45   A0A3B1KE85   A0A1S3L5W0   A0A3P8RME6  

PDB

4PLO     E-value=1.53492e-54,     Score=536

KEGG

101744167    K06843 netrin 1 | (RefSeq) netrin-B

GO

GO:0005576   GO:0008045   GO:0005604   GO:0009887   GO:0016358   GO:0009888   GO:0016021   GO:0001764   GO:0007097   GO:0030334   GO:0061643   GO:0030517   GO:0008284   GO:0005737   GO:0051963   GO:0098609   GO:0033564   GO:0045773   GO:0042472   GO:0001944   GO:0001947   GO:0071678   GO:0001569   GO:0016525   GO:0001525   GO:0048665   GO:0048846   GO:0021952   GO:0030516   GO:0030878   GO:0021960   GO:0061626   GO:0003146   GO:0035908   GO:0060603   GO:0005515   GO:0005615   GO:0008083   GO:0005179   GO:0015074   GO:0015923   GO:0005634   GO:0006260  

Subcellular location

Secreted  

Length:

272

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01185

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07590

outside

1  -  272

 

 

Pi

242.602632

Theta

173.167844

Tajima's D

1.280829

CLR

0.377672

CSRT

0.735463226838658

Interpretation

Uncertain